RNA–Protein interactions for RNA: ENST00000375299.7

UPF3A-202, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3A, Length 2,387 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-202ENST00000375299 HERVK_113P63121 156 aa15.25■□□□□ 0.03
UPF3A-202ENST00000375299 ACYP1P07311 99 aa15.24■□□□□ 0.03
UPF3A-202ENST00000375299 UTP20O75691 2785 aaKnown RBP15.24■□□□□ 0.03
UPF3A-202ENST00000375299 RS1O15537 224 aa15.24■□□□□ 0.03
UPF3A-202ENST00000375299 CSPG4Q6UVK1 2322 aa15.23■□□□□ 0.03
UPF3A-202ENST00000375299 USP9XQ93008 2570 aaPredicted RBP15.23■□□□□ 0.03
UPF3A-202ENST00000375299 DSCR9P59020 149 aa15.23■□□□□ 0.03
UPF3A-202ENST00000375299 BEAN1Q3B7T3 259 aa15.23■□□□□ 0.03
UPF3A-202ENST00000375299 LINC01587Q99440 93 aa15.23■□□□□ 0.03
UPF3A-202ENST00000375299 LINC00242Q5T6M2 205 aa15.22■□□□□ 0.03
UPF3A-202ENST00000375299 COPS9Q8WXC6 57 aa15.22■□□□□ 0.03
UPF3A-202ENST00000375299 ZNF625Q96I27 306 aaPredicted RBP15.22■□□□□ 0.03
UPF3A-202ENST00000375299 CHCHD5Q9BSY4 110 aa15.22■□□□□ 0.03
UPF3A-202ENST00000375299 A0A0U1RRA0 63 aa15.22■□□□□ 0.03
UPF3A-202ENST00000375299 MEIG1Q5JSS6 88 aa15.22■□□□□ 0.03
UPF3A-202ENST00000375299 SHISA2Q6UWI4 295 aa15.22■□□□□ 0.03
UPF3A-202ENST00000375299 SLURP1P55000 103 aa15.21■□□□□ 0.03
UPF3A-202ENST00000375299 SOSTDC1Q6X4U4 206 aa15.21■□□□□ 0.03
UPF3A-202ENST00000375299 LINC01356Q8N9X3 169 aa15.21■□□□□ 0.03
UPF3A-202ENST00000375299 IGSF10Q6WRI0 2623 aa15.2■□□□□ 0.02
UPF3A-202ENST00000375299 CSMD2Q7Z408 3487 aa15.2■□□□□ 0.02
UPF3A-202ENST00000375299 FAM19A3Q7Z5A8 133 aa15.2■□□□□ 0.02
UPF3A-202ENST00000375299 SMIM1B2RUZ4 78 aa15.19■□□□□ 0.02
UPF3A-202ENST00000375299 Q8N2B8 174 aa15.19■□□□□ 0.02
UPF3A-202ENST00000375299 IMUPQ9GZP8 106 aa15.19■□□□□ 0.02
UPF3A-202ENST00000375299 ZNF702PQ9H963 129 aa15.19■□□□□ 0.02
UPF3A-202ENST00000375299 DEFB136Q30KP8 78 aa15.18■□□□□ 0.02
UPF3A-202ENST00000375299 MAP6D1Q9H9H5 199 aa15.18■□□□□ 0.02
UPF3A-202ENST00000375299 VPREB3Q9UKI3 123 aa15.18■□□□□ 0.02
UPF3A-202ENST00000375299 INSP01308 110 aa15.17■□□□□ 0.02
UPF3A-202ENST00000375299 TRACP01848 142 aa15.17■□□□□ 0.02
UPF3A-202ENST00000375299 A0A096LNT2 108 aa15.17■□□□□ 0.02
UPF3A-202ENST00000375299 LINC00694P0DN24 101 aa15.17■□□□□ 0.02
UPF3A-202ENST00000375299 C18orf65Q6ZTR6 163 aa15.17■□□□□ 0.02
UPF3A-202ENST00000375299 PRIMA1Q86XR5 153 aa15.16■□□□□ 0.02
UPF3A-202ENST00000375299 FAM110AQ9BQ89 295 aa15.16■□□□□ 0.02
UPF3A-202ENST00000375299 FAM236AA0A1B0GUQ0 79 aa15.16■□□□□ 0.02
UPF3A-202ENST00000375299 FAM236BA0A1B0GV22 79 aa15.16■□□□□ 0.02
UPF3A-202ENST00000375299 DAZ2Q13117 558 aaKnown RBP15.16■□□□□ 0.02
UPF3A-202ENST00000375299 DAZ4Q86SG3 579 aaKnown RBP15.16■□□□□ 0.02
UPF3A-202ENST00000375299 SMIM20Q8N5G0 67 aa15.16■□□□□ 0.02
UPF3A-202ENST00000375299 SMCR5Q8TEV8 140 aa15.16■□□□□ 0.02
UPF3A-202ENST00000375299 DAZ3Q9NR90 486 aaKnown RBP15.16■□□□□ 0.02
UPF3A-202ENST00000375299 NDUFA7O95182 113 aa15.15■□□□□ 0.02
UPF3A-202ENST00000375299 CACNA1AO00555 2505 aa15.15■□□□□ 0.02
UPF3A-202ENST00000375299 J3QLI3 93 aa15.14■□□□□ 0.01
UPF3A-202ENST00000375299 MAPK1IP1LQ8NDC0 245 aa15.14■□□□□ 0.01
UPF3A-202ENST00000375299 TRAV13-1A0A0B4J241 112 aa15.13■□□□□ 0.01
UPF3A-202ENST00000375299 LINC00643Q86TS7 51 aa15.13■□□□□ 0.01
UPF3A-202ENST00000375299 CSDC2Q9Y534 153 aaKnown RBP15.13■□□□□ 0.01
UPF3A-202ENST00000375299 ZANQ9Y493 2812 aa15.13■□□□□ 0.01
UPF3A-202ENST00000375299 PEMTQ9UBM1 199 aa15.13■□□□□ 0.01
UPF3A-202ENST00000375299 BAALC-AS2P0C853 105 aa15.12■□□□□ 0.01
UPF3A-202ENST00000375299 HERV-K104P63124 156 aa15.12■□□□□ 0.01
UPF3A-202ENST00000375299 F5H768 121 aa15.11■□□□□ 0.01
UPF3A-202ENST00000375299 PPDPFQ9H3Y8 114 aa15.11■□□□□ 0.01
UPF3A-202ENST00000375299 FBN2P35556 2912 aa15.11■□□□□ 0.01
UPF3A-202ENST00000375299 FAM218AQ96MZ4 157 aa15.11■□□□□ 0.01
UPF3A-202ENST00000375299 SDIM1Q6ZPB5 146 aa15.1■□□□□ 0.01
UPF3A-202ENST00000375299 C22orf24Q9Y442 160 aa15.1■□□□□ 0.01
UPF3A-202ENST00000375299 DYNLRB2Q8TF09 96 aa15.1■□□□□ 0.01
UPF3A-202ENST00000375299 MYO18BQ8IUG5 2567 aa15.09■□□□□ 0.01
UPF3A-202ENST00000375299 RPL36AP83881 106 aaKnown RBP15.09■□□□□ 0.01
UPF3A-202ENST00000375299 FAM222AQ5U5X8 452 aa15.09■□□□□ 0.01
UPF3A-202ENST00000375299 Q6YL49 198 aa15.09■□□□□ 0.01
UPF3A-202ENST00000375299 NTM-AS1Q6ZSK4 140 aa15.09■□□□□ 0.01
UPF3A-202ENST00000375299 RPL36ALQ969Q0 106 aaKnown RBP15.09■□□□□ 0.01
UPF3A-202ENST00000375299 TMEM126AQ9H061 195 aa15.09■□□□□ 0.01
UPF3A-202ENST00000375299 USP9YO00507 2555 aaPredicted RBP15.09■□□□□ 0.01
UPF3A-202ENST00000375299 CDC42SE2Q9NRR3 84 aa15.09■□□□□ 0.01
UPF3A-202ENST00000375299 ANKRD17O75179 2603 aaKnown RBP15.08■□□□□ 0
UPF3A-202ENST00000375299 IL17DQ8TAD2 202 aa15.08■□□□□ 0
UPF3A-202ENST00000375299 TRGV1A0A0A0MS02 117 aa15.07■□□□□ 0
UPF3A-202ENST00000375299 K7EQD1 137 aa15.07■□□□□ 0
UPF3A-202ENST00000375299 XCL2Q9UBD3 114 aa15.07■□□□□ 0
UPF3A-202ENST00000375299 TRBV10-1A0A0K0K1A3 114 aa15.07■□□□□ 0
UPF3A-202ENST00000375299 FSHBP01225 129 aa15.07■□□□□ 0
UPF3A-202ENST00000375299 MXRA5Q9NR99 2828 aa15.07■□□□□ 0
UPF3A-202ENST00000375299 HIST2H2BCQ6DN03 193 aa15.06■□□□□ 0
UPF3A-202ENST00000375299 HIST2H2BDQ6DRA6 164 aa15.06■□□□□ 0
UPF3A-202ENST00000375299 C3orf56Q8N813 242 aa15.06■□□□□ 0
UPF3A-202ENST00000375299 INAFM2P0DMQ5 153 aa15.05■□□□□ 0
UPF3A-202ENST00000375299 PF4P02776 101 aa15.05■□□□□ -0
UPF3A-202ENST00000375299 RPL28P46779 137 aaKnown RBP15.05■□□□□ -0
UPF3A-202ENST00000375299 DEFB114Q30KQ6 69 aa15.05■□□□□ -0
UPF3A-202ENST00000375299 CREBBPQ92793 2442 aa15.04■□□□□ -0
UPF3A-202ENST00000375299 TRAV13-2A0A0B4J235 113 aa15.04■□□□□ -0
UPF3A-202ENST00000375299 Q96MF0 132 aa15.04■□□□□ -0
UPF3A-202ENST00000375299 C1orf158Q8N1D5 194 aa15.04■□□□□ -0
UPF3A-202ENST00000375299 POLQO75417 2590 aa15.03■□□□□ -0
UPF3A-202ENST00000375299 C4orf3Q8WVX3 66 aa15.03■□□□□ -0
UPF3A-202ENST00000375299 CRPP02741 224 aa15.03■□□□□ -0
UPF3A-202ENST00000375299 CXCL5P42830 114 aa15.03■□□□□ -0
UPF3A-202ENST00000375299 IGHV4-31P0DP07 118 aa15.02■□□□□ -0
UPF3A-202ENST00000375299 MALP21145 153 aa15.02■□□□□ -0
UPF3A-202ENST00000375299 Q9HAA7 133 aa15.02■□□□□ -0
UPF3A-202ENST00000375299 ATP5G1P05496 136 aa15.02□□□□□ -0.01
UPF3A-202ENST00000375299 C3orf22Q8N5N4 141 aa15.02□□□□□ -0.01
UPF3A-202ENST00000375299 KHDC1LQ5JSQ8 128 aa15.01□□□□□ -0.01
UPF3A-202ENST00000375299 GAGE2AQ6NT46 116 aa15.01□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 277.8 ms