RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 RNASE13Q5GAN3 156 aaKnown RBP12.83□□□□□ -0.36
CLN3-206ENST00000360019 CST9LQ9H4G1 147 aa12.83□□□□□ -0.36
CLN3-206ENST00000360019 CSDC2Q9Y534 153 aaKnown RBP12.83□□□□□ -0.36
CLN3-206ENST00000360019 LYPD5Q6UWN5 251 aa12.82□□□□□ -0.36
CLN3-206ENST00000360019 MRPS36P82909 103 aaKnown RBP12.81□□□□□ -0.36
CLN3-206ENST00000360019 DGAT2L7PQ6IED9 249 aa12.81□□□□□ -0.36
CLN3-206ENST00000360019 AMELXQ99217 191 aa12.81□□□□□ -0.36
CLN3-206ENST00000360019 VCX2Q9H322 139 aa12.81□□□□□ -0.36
CLN3-206ENST00000360019 CHTOPQ9Y3Y2 248 aaKnown RBP12.81□□□□□ -0.36
CLN3-206ENST00000360019 LYSTQ99698 3801 aa12.81□□□□□ -0.36
CLN3-206ENST00000360019 F8VRH5 84 aa12.81□□□□□ -0.36
CLN3-206ENST00000360019 MAJINQ3KP22 176 aa12.81□□□□□ -0.36
CLN3-206ENST00000360019 LELP1Q5T871 98 aa12.81□□□□□ -0.36
CLN3-206ENST00000360019 AMMECR1LQ6DCA0 310 aa12.81□□□□□ -0.36
CLN3-206ENST00000360019 PAPPA-AS1Q5QFB9 102 aa12.8□□□□□ -0.36
CLN3-206ENST00000360019 CDC42SE2Q9NRR3 84 aa12.8□□□□□ -0.36
CLN3-206ENST00000360019 TIRAPP58753 221 aa12.79□□□□□ -0.36
CLN3-206ENST00000360019 OR5A1Q8NGJ0 315 aa12.79□□□□□ -0.36
CLN3-206ENST00000360019 IGLV4-69A0A075B6H9 119 aa12.78□□□□□ -0.36
CLN3-206ENST00000360019 IGLV4-60A0A075B6I1 120 aa12.78□□□□□ -0.36
CLN3-206ENST00000360019 DPM2O94777 84 aa12.78□□□□□ -0.36
CLN3-206ENST00000360019 ZNF25P17030 456 aaPredicted RBP12.78□□□□□ -0.36
CLN3-206ENST00000360019 SMAGPQ0VAQ4 97 aa12.78□□□□□ -0.36
CLN3-206ENST00000360019 IGKCP01834 107 aa12.78□□□□□ -0.36
CLN3-206ENST00000360019 MPV17L2Q567V2 206 aa12.78□□□□□ -0.36
CLN3-206ENST00000360019 C15orf53Q8NAA6 179 aa12.78□□□□□ -0.36
CLN3-206ENST00000360019 TMEM101Q96IK0 257 aa12.78□□□□□ -0.36
CLN3-206ENST00000360019 DNAH1Q9P2D7 4330 aa12.78□□□□□ -0.36
CLN3-206ENST00000360019 TMEM262E9PQX1 116 aa12.77□□□□□ -0.37
CLN3-206ENST00000360019 S100A12P80511 92 aa12.77□□□□□ -0.37
CLN3-206ENST00000360019 ESRGQ1W209 222 aa12.77□□□□□ -0.37
CLN3-206ENST00000360019 ZNF664Q8N3J9 261 aa12.77□□□□□ -0.37
CLN3-206ENST00000360019 VAMP8Q9BV40 100 aa12.77□□□□□ -0.37
CLN3-206ENST00000360019 PAM16Q9Y3D7 125 aa12.77□□□□□ -0.37
CLN3-206ENST00000360019 hDV102S1A0JD36 115 aa12.76□□□□□ -0.37
CLN3-206ENST00000360019 IGLL5B9A064 214 aa12.76□□□□□ -0.37
CLN3-206ENST00000360019 TRAV9-2A0A087WT02 112 aa12.76□□□□□ -0.37
CLN3-206ENST00000360019 PLNP26678 52 aa12.76□□□□□ -0.37
CLN3-206ENST00000360019 RBX1P62877 108 aa12.76□□□□□ -0.37
CLN3-206ENST00000360019 Q8N3U1 123 aa12.76□□□□□ -0.37
CLN3-206ENST00000360019 A0A1B0GUV1 79 aa12.75□□□□□ -0.37
CLN3-206ENST00000360019 C2orf88Q9BSF0 95 aa12.74□□□□□ -0.37
CLN3-206ENST00000360019 C11orf86A6NJI1 115 aa12.74□□□□□ -0.37
CLN3-206ENST00000360019 STPG4Q8N801 248 aa12.74□□□□□ -0.37
CLN3-206ENST00000360019 A0A0J9YXV3 536 aa12.73□□□□□ -0.37
CLN3-206ENST00000360019 UBE2D1P51668 147 aa12.73□□□□□ -0.37
CLN3-206ENST00000360019 TGP01266 2768 aa12.73□□□□□ -0.37
CLN3-206ENST00000360019 VPS13DQ5THJ4 4388 aa12.73□□□□□ -0.37
CLN3-206ENST00000360019 IGLC3P0DOY3 106 aa12.72□□□□□ -0.37
CLN3-206ENST00000360019 SPATA45Q537H7 98 aa12.72□□□□□ -0.37
CLN3-206ENST00000360019 NFE4Q86UQ8 179 aa12.72□□□□□ -0.37
CLN3-206ENST00000360019 WFDC10BQ8IUB3 73 aa12.72□□□□□ -0.37
CLN3-206ENST00000360019 TRAV8-6A0A0B4J262 113 aa12.72□□□□□ -0.37
CLN3-206ENST00000360019 CHAC1Q9BUX1 264 aa12.72□□□□□ -0.37
CLN3-206ENST00000360019 TRAV13-1A0A0B4J241 112 aa12.7□□□□□ -0.38
CLN3-206ENST00000360019 HSBP1L1C9JCN9 74 aa12.7□□□□□ -0.38
CLN3-206ENST00000360019 ANKRD39Q53RE8 183 aa12.7□□□□□ -0.38
CLN3-206ENST00000360019 TCTAP57738 103 aa12.69□□□□□ -0.38
CLN3-206ENST00000360019 PRO1933Q9H354 126 aa12.69□□□□□ -0.38
CLN3-206ENST00000360019 PKIAP61925 76 aa12.69□□□□□ -0.38
CLN3-206ENST00000360019 IGKV3OR2-268A0A0C4DH90 116 aa12.68□□□□□ -0.38
CLN3-206ENST00000360019 TINCRA0A1B0GVN0 87 aa12.68□□□□□ -0.38
CLN3-206ENST00000360019 LINC00242Q5T6M2 205 aa12.68□□□□□ -0.38
CLN3-206ENST00000360019 LINC00588Q9Y4M8 146 aa12.68□□□□□ -0.38
CLN3-206ENST00000360019 ZNF22P17026 224 aaPredicted RBP12.67□□□□□ -0.38
CLN3-206ENST00000360019 FAM19A3Q7Z5A8 133 aa12.67□□□□□ -0.38
CLN3-206ENST00000360019 TENM2Q9NT68 2774 aa12.67□□□□□ -0.38
CLN3-206ENST00000360019 ANGP03950 147 aaKnown RBP12.67□□□□□ -0.38
CLN3-206ENST00000360019 TMEM170BQ5T4T1 132 aa12.67□□□□□ -0.38
CLN3-206ENST00000360019 CLPSL2Q6UWE3 100 aa12.67□□□□□ -0.38
CLN3-206ENST00000360019 LINC00269Q8N2A0 174 aa12.67□□□□□ -0.38
CLN3-206ENST00000360019 APLNQ9ULZ1 77 aa12.67□□□□□ -0.38
CLN3-206ENST00000360019 NUPR2A6NF83 97 aa12.66□□□□□ -0.38
CLN3-206ENST00000360019 COX6A2Q02221 97 aa12.66□□□□□ -0.38
CLN3-206ENST00000360019 IGHV3-30P01768 117 aa12.65□□□□□ -0.38
CLN3-206ENST00000360019 IGHV3-33P01772 117 aa12.65□□□□□ -0.38
CLN3-206ENST00000360019 IGHV3-30-3P0DP02 117 aa12.65□□□□□ -0.38
CLN3-206ENST00000360019 IGHV3-30-5P0DP03 117 aa12.65□□□□□ -0.38
CLN3-206ENST00000360019 IGKV2D-26A0A0A0MRZ7 120 aa12.65□□□□□ -0.39
CLN3-206ENST00000360019 CCL18P55774 89 aa12.65□□□□□ -0.39
CLN3-206ENST00000360019 MRPS16Q9Y3D3 137 aaKnown RBP12.65□□□□□ -0.39
CLN3-206ENST00000360019 LINC00959A0A1B0GUT2 108 aa12.64□□□□□ -0.39
CLN3-206ENST00000360019 GEMIN7Q9H840 131 aaKnown RBP12.64□□□□□ -0.39
CLN3-206ENST00000360019 IGLV5-45A0A087WSX0 123 aa12.63□□□□□ -0.39
CLN3-206ENST00000360019 HERVK_113P63121 156 aa12.63□□□□□ -0.39
CLN3-206ENST00000360019 C14orf144Q96I85 54 aa12.63□□□□□ -0.39
CLN3-206ENST00000360019 REG3AQ06141 175 aa12.62□□□□□ -0.39
CLN3-206ENST00000360019 LINC00469Q8N7U9 141 aa12.62□□□□□ -0.39
CLN3-206ENST00000360019 CDKN2A-AS1Q9UH64 79 aa12.62□□□□□ -0.39
CLN3-206ENST00000360019 KLK12Q9UKR0 248 aa12.62□□□□□ -0.39
CLN3-206ENST00000360019 TMEM223A0PJW6 202 aa12.62□□□□□ -0.39
CLN3-206ENST00000360019 TSTD3H0UI37 97 aa12.62□□□□□ -0.39
CLN3-206ENST00000360019 SEC11AP67812 179 aa12.62□□□□□ -0.39
CLN3-206ENST00000360019 LINC01556Q5JQF7 62 aa12.62□□□□□ -0.39
CLN3-206ENST00000360019 KLK5Q9Y337 293 aaPredicted RBP12.62□□□□□ -0.39
CLN3-206ENST00000360019 NMUP48645 174 aa12.61□□□□□ -0.39
CLN3-206ENST00000360019 PRR34Q9NV39 138 aa12.61□□□□□ -0.39
CLN3-206ENST00000360019 TP73-AS1Q9UF72 201 aa12.61□□□□□ -0.39
CLN3-206ENST00000360019 E9PLD3 99 aa12.6□□□□□ -0.39
CLN3-206ENST00000360019 UPK3BQ9BT76 320 aa12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 385.7 ms