RNA–Protein interactions for RNA: ENST00000354098.7

SHMT1-203, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene SHMT1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-203ENST00000354098 CSDC2Q9Y534 153 aaKnown RBP14.77□□□□□ -0.04
SHMT1-203ENST00000354098 MIAQ16674 131 aa14.77□□□□□ -0.05
SHMT1-203ENST00000354098 RNASE13Q5GAN3 156 aaKnown RBP14.77□□□□□ -0.05
SHMT1-203ENST00000354098 ZNF664Q8N3J9 261 aa14.77□□□□□ -0.05
SHMT1-203ENST00000354098 FAM104AQ969W3 186 aa14.77□□□□□ -0.05
SHMT1-203ENST00000354098 OPRPNQ99935 248 aaPredicted RBP14.77□□□□□ -0.05
SHMT1-203ENST00000354098 LINC00336Q6ZUF6 198 aa14.76□□□□□ -0.05
SHMT1-203ENST00000354098 IGLV10-54A0A075B6I4 117 aa14.75□□□□□ -0.05
SHMT1-203ENST00000354098 SMAGPQ0VAQ4 97 aa14.75□□□□□ -0.05
SHMT1-203ENST00000354098 Q6ZUT4 128 aa14.75□□□□□ -0.05
SHMT1-203ENST00000354098 CYSLTR1Q9Y271 337 aa14.75□□□□□ -0.05
SHMT1-203ENST00000354098 DNAH17Q9UFH2 4485 aa14.75□□□□□ -0.05
SHMT1-203ENST00000354098 FAT2Q9NYQ8 4349 aa14.75□□□□□ -0.05
SHMT1-203ENST00000354098 PSCAO43653 123 aa14.74□□□□□ -0.05
SHMT1-203ENST00000354098 LINC00614P0C842 121 aa14.74□□□□□ -0.05
SHMT1-203ENST00000354098 MAPKAPK5-AS1Q8N8E1 139 aa14.74□□□□□ -0.05
SHMT1-203ENST00000354098 SPANXA1Q9NS26 97 aa14.74□□□□□ -0.05
SHMT1-203ENST00000354098 RMI2Q96E14 147 aa14.74□□□□□ -0.05
SHMT1-203ENST00000354098 C1orf43Q9BWL3 253 aa14.74□□□□□ -0.05
SHMT1-203ENST00000354098 TM2D2Q9BX73 214 aa14.74□□□□□ -0.05
SHMT1-203ENST00000354098 AP5S1Q9NUS5 200 aa14.73□□□□□ -0.05
SHMT1-203ENST00000354098 PYGO1Q9Y3Y4 419 aa14.72□□□□□ -0.05
SHMT1-203ENST00000354098 KRTAP26-1Q6PEX3 210 aa14.71□□□□□ -0.05
SHMT1-203ENST00000354098 TOMM6Q96B49 74 aa14.71□□□□□ -0.05
SHMT1-203ENST00000354098 COX11Q9Y6N1 276 aa14.71□□□□□ -0.06
SHMT1-203ENST00000354098 TRAV8-4A0A0B4J246 113 aa14.7□□□□□ -0.06
SHMT1-203ENST00000354098 RAB5BP61020 215 aa14.7□□□□□ -0.06
SHMT1-203ENST00000354098 IGLV4-3A0A075B6K6 122 aa14.69□□□□□ -0.06
SHMT1-203ENST00000354098 A0A096LNJ9 63 aa14.69□□□□□ -0.06
SHMT1-203ENST00000354098 LINC00959A0A1B0GUT2 108 aa14.69□□□□□ -0.06
SHMT1-203ENST00000354098 IGIPA6NJ69 53 aa14.69□□□□□ -0.06
SHMT1-203ENST00000354098 G0S2P27469 103 aa14.69□□□□□ -0.06
SHMT1-203ENST00000354098 MRPS36P82909 103 aaKnown RBP14.69□□□□□ -0.06
SHMT1-203ENST00000354098 PMCHL1Q16048 86 aa14.69□□□□□ -0.06
SHMT1-203ENST00000354098 LRCOL1A6NCL2 159 aa14.68□□□□□ -0.06
SHMT1-203ENST00000354098 BAGE3Q86Y29 109 aa14.68□□□□□ -0.06
SHMT1-203ENST00000354098 BAALCQ8WXS3 180 aa14.68□□□□□ -0.06
SHMT1-203ENST00000354098 A0A087WTM6 91 aa14.67□□□□□ -0.06
SHMT1-203ENST00000354098 LECT2O14960 151 aa14.67□□□□□ -0.06
SHMT1-203ENST00000354098 WFDC2Q14508 124 aa14.67□□□□□ -0.06
SHMT1-203ENST00000354098 CHCHD10Q8WYQ3 142 aaPredicted RBP14.67□□□□□ -0.06
SHMT1-203ENST00000354098 TRAV13-1A0A0B4J241 112 aa14.66□□□□□ -0.06
SHMT1-203ENST00000354098 A0A1B0GVY2 172 aa14.66□□□□□ -0.06
SHMT1-203ENST00000354098 ZC2HC1BQ5TFG8 222 aa14.66□□□□□ -0.06
SHMT1-203ENST00000354098 TMEM141Q96I45 108 aa14.66□□□□□ -0.06
SHMT1-203ENST00000354098 SCGB3A1Q96QR1 104 aa14.66□□□□□ -0.06
SHMT1-203ENST00000354098 CHCHD1Q96BP2 118 aaKnown RBP14.65□□□□□ -0.06
SHMT1-203ENST00000354098 GAGE12HA6NDE8 117 aa14.65□□□□□ -0.06
SHMT1-203ENST00000354098 CCL25O15444 150 aa14.65□□□□□ -0.06
SHMT1-203ENST00000354098 ERASQ7Z444 233 aa14.65□□□□□ -0.06
SHMT1-203ENST00000354098 HIST1H2BKO60814 126 aa14.64□□□□□ -0.07
SHMT1-203ENST00000354098 HIST1H2BJP06899 126 aa14.64□□□□□ -0.07
SHMT1-203ENST00000354098 HIST1H2BOP23527 126 aa14.64□□□□□ -0.07
SHMT1-203ENST00000354098 HIST1H2BBP33778 126 aa14.64□□□□□ -0.07
SHMT1-203ENST00000354098 XCL1P47992 114 aa14.64□□□□□ -0.07
SHMT1-203ENST00000354098 HIST1H2BDP58876 126 aa14.64□□□□□ -0.07
SHMT1-203ENST00000354098 LINC00310P59036 64 aa14.64□□□□□ -0.07
SHMT1-203ENST00000354098 HIST1H2BCP62807 126 aa14.64□□□□□ -0.07
SHMT1-203ENST00000354098 SS18Q15532 418 aa14.64□□□□□ -0.07
SHMT1-203ENST00000354098 HIST2H2BEQ16778 126 aa14.64□□□□□ -0.07
SHMT1-203ENST00000354098 HIST2H2BFQ5QNW6 126 aaPredicted RBP14.64□□□□□ -0.07
SHMT1-203ENST00000354098 HIST1H2BHQ93079 126 aa14.64□□□□□ -0.07
SHMT1-203ENST00000354098 TIMM17AQ99595 171 aa14.64□□□□□ -0.07
SHMT1-203ENST00000354098 HIST1H2BNQ99877 126 aa14.64□□□□□ -0.07
SHMT1-203ENST00000354098 HIST1H2BMQ99879 126 aa14.64□□□□□ -0.07
SHMT1-203ENST00000354098 PKD1P98161 4303 aa14.63□□□□□ -0.07
SHMT1-203ENST00000354098 HBDP02042 147 aa14.63□□□□□ -0.07
SHMT1-203ENST00000354098 SERF1AO75920 110 aa14.62□□□□□ -0.07
SHMT1-203ENST00000354098 LINC00173Q6ZV60 143 aa14.62□□□□□ -0.07
SHMT1-203ENST00000354098 IFITM10A6NMD0 228 aa14.61□□□□□ -0.07
SHMT1-203ENST00000354098 C1orf196B1AJZ1 125 aa14.61□□□□□ -0.07
SHMT1-203ENST00000354098 NPSP0C0P6 89 aa14.61□□□□□ -0.07
SHMT1-203ENST00000354098 TEX43Q6ZNM6 134 aa14.61□□□□□ -0.07
SHMT1-203ENST00000354098 AMELXQ99217 191 aa14.61□□□□□ -0.07
SHMT1-203ENST00000354098 LINC01549A6NIU2 74 aa14.61□□□□□ -0.07
SHMT1-203ENST00000354098 NUPR1O60356 82 aa14.61□□□□□ -0.07
SHMT1-203ENST00000354098 FOXI1Q12951 378 aa14.61□□□□□ -0.07
SHMT1-203ENST00000354098 Q6ZN92 141 aa14.61□□□□□ -0.07
SHMT1-203ENST00000354098 VCX2Q9H322 139 aa14.61□□□□□ -0.07
SHMT1-203ENST00000354098 FAM19A2Q8N3H0 131 aa14.6□□□□□ -0.07
SHMT1-203ENST00000354098 HSBP1O75506 76 aa14.59□□□□□ -0.07
SHMT1-203ENST00000354098 FUSP35637 526 aaKnown RBP eCLIP14.59□□□□□ -0.07
SHMT1-203ENST00000354098 PDZD11Q5EBL8 140 aa14.59□□□□□ -0.07
SHMT1-203ENST00000354098 HECTD4Q9Y4D8 3996 aa14.59□□□□□ -0.07
SHMT1-203ENST00000354098 EREGO14944 169 aa14.58□□□□□ -0.07
SHMT1-203ENST00000354098 KRTAP10-2P60368 255 aa14.58□□□□□ -0.07
SHMT1-203ENST00000354098 USP17L23D6RBM5 183 aa14.58□□□□□ -0.08
SHMT1-203ENST00000354098 CD164L2Q6UWJ8 174 aa14.58□□□□□ -0.08
SHMT1-203ENST00000354098 SPATA12Q7Z6I5 190 aa14.58□□□□□ -0.08
SHMT1-203ENST00000354098 Q8N814 137 aa14.58□□□□□ -0.08
SHMT1-203ENST00000354098 DNAH11Q96DT5 4516 aa14.57□□□□□ -0.08
SHMT1-203ENST00000354098 PAPPA-AS1Q5QFB9 102 aa14.57□□□□□ -0.08
SHMT1-203ENST00000354098 EPPK1P58107 5090 aaKnown RBP14.57□□□□□ -0.08
SHMT1-203ENST00000354098 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP14.56□□□□□ -0.08
SHMT1-203ENST00000354098 UBE2D1P51668 147 aa14.56□□□□□ -0.08
SHMT1-203ENST00000354098 C2orf88Q9BSF0 95 aa14.56□□□□□ -0.08
SHMT1-203ENST00000354098 LINC00242Q5T6M2 205 aa14.55□□□□□ -0.08
SHMT1-203ENST00000354098 COX6A2Q02221 97 aa14.54□□□□□ -0.08
SHMT1-203ENST00000354098 CST9LQ9H4G1 147 aa14.53□□□□□ -0.08
SHMT1-203ENST00000354098 IGLV2-33A0A075B6J2 118 aaPredicted RBP14.52□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms