RNA–Protein interactions for RNA: ENST00000332395.6

DDX28-201, Transcript of DEAD-box helicase 28, humanhuman

APPRIS P1 BASIC

Gene DDX28, Length 2,169 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28-201ENST00000332395 SRSF9Q13242 221 aaKnown RBP eCLIP12.49□□□□□ -0.41
DDX28-201ENST00000332395 LEPROTO15243 131 aa12.48□□□□□ -0.41
DDX28-201ENST00000332395 TSPAN13O95857 204 aa12.48□□□□□ -0.41
DDX28-201ENST00000332395 RNASE13Q5GAN3 156 aaKnown RBP12.48□□□□□ -0.41
DDX28-201ENST00000332395 MRPS36P82909 103 aaKnown RBP12.47□□□□□ -0.41
DDX28-201ENST00000332395 NOP10Q9NPE3 64 aaKnown RBP12.47□□□□□ -0.41
DDX28-201ENST00000332395 TRAV4A0A0B4J268 109 aa12.47□□□□□ -0.41
DDX28-201ENST00000332395 PSMB2P49721 201 aa12.47□□□□□ -0.41
DDX28-201ENST00000332395 UBE2D3P61077 147 aa12.47□□□□□ -0.41
DDX28-201ENST00000332395 UBE2D2P62837 147 aa12.47□□□□□ -0.41
DDX28-201ENST00000332395 DAZ2Q13117 558 aaKnown RBP12.47□□□□□ -0.41
DDX28-201ENST00000332395 C16orf74Q96GX8 76 aa12.47□□□□□ -0.41
DDX28-201ENST00000332395 PF4P02776 101 aa12.46□□□□□ -0.41
DDX28-201ENST00000332395 IGHV3-64A0A075B6Q5 118 aa12.46□□□□□ -0.42
DDX28-201ENST00000332395 PLAC8L1A1L4L8 177 aa12.46□□□□□ -0.42
DDX28-201ENST00000332395 K7EQD1 137 aa12.46□□□□□ -0.42
DDX28-201ENST00000332395 CSNK1G2-AS1Q8NCQ2 148 aa12.46□□□□□ -0.42
DDX28-201ENST00000332395 Q6ZUT4 128 aa12.45□□□□□ -0.42
DDX28-201ENST00000332395 SLC25A29Q8N8R3 303 aa12.45□□□□□ -0.42
DDX28-201ENST00000332395 GEMIN7Q9H840 131 aaKnown RBP12.45□□□□□ -0.42
DDX28-201ENST00000332395 OTOGQ6ZRI0 2925 aa12.45□□□□□ -0.42
DDX28-201ENST00000332395 TRAV26-1A0A087WT03 109 aa12.45□□□□□ -0.42
DDX28-201ENST00000332395 LOC107984156A0A0G2JMH3 177 aa12.45□□□□□ -0.42
DDX28-201ENST00000332395 TRBV10-1A0A0K0K1A3 114 aa12.45□□□□□ -0.42
DDX28-201ENST00000332395 SPINK8P0C7L1 97 aa12.45□□□□□ -0.42
DDX28-201ENST00000332395 LYRM7Q5U5X0 104 aa12.45□□□□□ -0.42
DDX28-201ENST00000332395 ARL17AQ8IVW1 177 aa12.45□□□□□ -0.42
DDX28-201ENST00000332395 RPL36AP83881 106 aaKnown RBP12.44□□□□□ -0.42
DDX28-201ENST00000332395 LINC00482Q8N8I6 264 aa12.44□□□□□ -0.42
DDX28-201ENST00000332395 RPL36ALQ969Q0 106 aaKnown RBP12.44□□□□□ -0.42
DDX28-201ENST00000332395 PPDPFLQ8WWR9 84 aa12.43□□□□□ -0.42
DDX28-201ENST00000332395 CARD19Q96LW7 228 aa12.43□□□□□ -0.42
DDX28-201ENST00000332395 NOTCH3Q9UM47 2321 aa12.43□□□□□ -0.42
DDX28-201ENST00000332395 INAFM1C9JVW0 142 aa12.43□□□□□ -0.42
DDX28-201ENST00000332395 MT-ATP8P03928 68 aa12.43□□□□□ -0.42
DDX28-201ENST00000332395 TINCRA0A1B0GVN0 87 aa12.42□□□□□ -0.42
DDX28-201ENST00000332395 TEN1Q86WV5 123 aa12.42□□□□□ -0.42
DDX28-201ENST00000332395 IGHV3-30P01768 117 aa12.42□□□□□ -0.42
DDX28-201ENST00000332395 IGHV3-30-5P0DP03 117 aa12.42□□□□□ -0.42
DDX28-201ENST00000332395 SFTA2Q6UW10 78 aa12.42□□□□□ -0.42
DDX28-201ENST00000332395 SBSPONQ8IVN8 264 aa12.42□□□□□ -0.42
DDX28-201ENST00000332395 TIMM21Q9BVV7 248 aa12.42□□□□□ -0.42
DDX28-201ENST00000332395 NOTCH2Q04721 2471 aa12.41□□□□□ -0.42
DDX28-201ENST00000332395 GAGE7O76087 117 aa12.41□□□□□ -0.42
DDX28-201ENST00000332395 GAGE12FP0CL80 117 aa12.41□□□□□ -0.42
DDX28-201ENST00000332395 GAGE12GP0CL81 117 aa12.41□□□□□ -0.42
DDX28-201ENST00000332395 GAGE12IP0CL82 117 aa12.41□□□□□ -0.42
DDX28-201ENST00000332395 IGHV3-30-3P0DP02 117 aa12.41□□□□□ -0.42
DDX28-201ENST00000332395 XGP55808 180 aa12.41□□□□□ -0.42
DDX28-201ENST00000332395 TRGV2A0A075B6R0 118 aa12.4□□□□□ -0.42
DDX28-201ENST00000332395 DAZ4Q86SG3 579 aaKnown RBP12.4□□□□□ -0.42
DDX28-201ENST00000332395 DAZ3Q9NR90 486 aaKnown RBP12.4□□□□□ -0.42
DDX28-201ENST00000332395 TRBV20-1A0A075B6N2 111 aa12.4□□□□□ -0.42
DDX28-201ENST00000332395 TCL1BO95988 128 aa12.4□□□□□ -0.42
DDX28-201ENST00000332395 OVOL2Q9BRP0 275 aa12.4□□□□□ -0.42
DDX28-201ENST00000332395 TRAV8-3A0A0A6YYJ7 113 aa12.39□□□□□ -0.43
DDX28-201ENST00000332395 GAGE12JA6NER3 117 aa12.39□□□□□ -0.43
DDX28-201ENST00000332395 GAGE4Q13068 117 aa12.39□□□□□ -0.43
DDX28-201ENST00000332395 GAGE5Q13069 117 aa12.39□□□□□ -0.43
DDX28-201ENST00000332395 DGAT2L7PQ6IED9 249 aa12.39□□□□□ -0.43
DDX28-201ENST00000332395 NTM-AS1Q6ZSK4 140 aa12.39□□□□□ -0.43
DDX28-201ENST00000332395 C10orf126Q8N4M7 172 aa12.39□□□□□ -0.43
DDX28-201ENST00000332395 IGHV1-58A0A0C4DH39 117 aa12.38□□□□□ -0.43
DDX28-201ENST00000332395 LINC00694P0DN24 101 aa12.37□□□□□ -0.43
DDX28-201ENST00000332395 CFC1BP0CG36 223 aa12.37□□□□□ -0.43
DDX28-201ENST00000332395 CFC1P0CG37 223 aa12.37□□□□□ -0.43
DDX28-201ENST00000332395 A0A0J9YXY3 114 aa12.36□□□□□ -0.43
DDX28-201ENST00000332395 VSIG2Q96IQ7 327 aa12.36□□□□□ -0.43
DDX28-201ENST00000332395 NSD1Q96L73 2696 aaPredicted RBP12.36□□□□□ -0.43
DDX28-201ENST00000332395 TRBV6-4A0A1B0GX49 114 aa12.35□□□□□ -0.43
DDX28-201ENST00000332395 C2CD3Q4AC94 2353 aa12.35□□□□□ -0.43
DDX28-201ENST00000332395 ERG28Q9UKR5 140 aa12.35□□□□□ -0.43
DDX28-201ENST00000332395 CSDC2Q9Y534 153 aaKnown RBP12.35□□□□□ -0.43
DDX28-201ENST00000332395 TIRAPP58753 221 aa12.34□□□□□ -0.43
DDX28-201ENST00000332395 ANKRD29Q8N6D5 301 aa12.34□□□□□ -0.43
DDX28-201ENST00000332395 CDKN2A-AS1Q9UH64 79 aa12.34□□□□□ -0.43
DDX28-201ENST00000332395 IGLV5-45A0A087WSX0 123 aa12.33□□□□□ -0.44
DDX28-201ENST00000332395 TRGV4A0A0C4DH28 118 aa12.33□□□□□ -0.44
DDX28-201ENST00000332395 LOC100131303A0A0U1RQF7 123 aa12.33□□□□□ -0.44
DDX28-201ENST00000332395 SPATA3Q8NHX4 192 aa12.33□□□□□ -0.44
DDX28-201ENST00000332395 NDUFA12Q9UI09 145 aa12.33□□□□□ -0.44
DDX28-201ENST00000332395 A8MZ25 164 aa12.33□□□□□ -0.44
DDX28-201ENST00000332395 PRO1854Q9UHT4 67 aa12.33□□□□□ -0.44
DDX28-201ENST00000332395 FN1P02751 2386 aaKnown RBP12.32□□□□□ -0.44
DDX28-201ENST00000332395 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP12.32□□□□□ -0.44
DDX28-201ENST00000332395 TMEM262E9PQX1 116 aa12.32□□□□□ -0.44
DDX28-201ENST00000332395 CRLF1O75462 422 aa12.32□□□□□ -0.44
DDX28-201ENST00000332395 C9orf66Q5T8R8 295 aa12.32□□□□□ -0.44
DDX28-201ENST00000332395 RNF183Q96D59 192 aa12.32□□□□□ -0.44
DDX28-201ENST00000332395 A4D1N5 150 aa12.31□□□□□ -0.44
DDX28-201ENST00000332395 M0QXV9 152 aa12.31□□□□□ -0.44
DDX28-201ENST00000332395 SCGB1C2P0DMR2 95 aa12.31□□□□□ -0.44
DDX28-201ENST00000332395 COX6A2Q02221 97 aa12.31□□□□□ -0.44
DDX28-201ENST00000332395 FHL2Q14192 279 aa12.31□□□□□ -0.44
DDX28-201ENST00000332395 LINC00242Q5T6M2 205 aa12.31□□□□□ -0.44
DDX28-201ENST00000332395 HERVK_113P63121 156 aa12.3□□□□□ -0.44
DDX28-201ENST00000332395 MUSTN1Q8IVN3 82 aa12.3□□□□□ -0.44
DDX28-201ENST00000332395 LITAFQ99732 161 aa12.3□□□□□ -0.44
DDX28-201ENST00000332395 TMEM243Q9BU79 118 aa12.3□□□□□ -0.44
DDX28-201ENST00000332395 VWFP04275 2813 aa12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 65.5 ms