RNA–Protein interactions for RNA: ENST00000325404.2

SOX2-201, Transcript of SRY-box 2, humanhuman

APPRIS P1 BASIC

Gene SOX2, Length 2,513 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2-201ENST00000325404 A0A1B0GV72 72 aa14.38□□□□□ -0.11
SOX2-201ENST00000325404 TMEM262E9PQX1 116 aa14.38□□□□□ -0.11
SOX2-201ENST00000325404 MIAQ16674 131 aa14.38□□□□□ -0.11
SOX2-201ENST00000325404 TRAV8-3A0A0A6YYJ7 113 aa14.38□□□□□ -0.11
SOX2-201ENST00000325404 TRAV25A0A0B4J276 109 aa14.37□□□□□ -0.11
SOX2-201ENST00000325404 IFITM1P13164 125 aa14.37□□□□□ -0.11
SOX2-201ENST00000325404 Q9UF83 564 aa14.37□□□□□ -0.11
SOX2-201ENST00000325404 NACAE9PAV3 2078 aa14.37□□□□□ -0.11
SOX2-201ENST00000325404 C9JAW5 83 aa14.36□□□□□ -0.11
SOX2-201ENST00000325404 Q6ZSV7 163 aa14.36□□□□□ -0.11
SOX2-201ENST00000325404 SORL1Q92673 2214 aa14.36□□□□□ -0.11
SOX2-201ENST00000325404 FHL3Q13643 280 aa14.36□□□□□ -0.11
SOX2-201ENST00000325404 Q6ZUT4 128 aa14.36□□□□□ -0.11
SOX2-201ENST00000325404 GEMIN7Q9H840 131 aaKnown RBP14.36□□□□□ -0.11
SOX2-201ENST00000325404 IGKV2D-29A0A075B6S2 120 aaPredicted RBP14.35□□□□□ -0.11
SOX2-201ENST00000325404 IGKV2-29A2NJV5 120 aaPredicted RBP14.35□□□□□ -0.11
SOX2-201ENST00000325404 PRM2P04554 102 aa14.35□□□□□ -0.11
SOX2-201ENST00000325404 Q1RN00 199 aa14.35□□□□□ -0.11
SOX2-201ENST00000325404 ESM1Q9NQ30 184 aa14.35□□□□□ -0.11
SOX2-201ENST00000325404 LINC01620Q4KN68 170 aa14.35□□□□□ -0.11
SOX2-201ENST00000325404 ADAMTSL4-AS1Q5T5F5 129 aa14.35□□□□□ -0.11
SOX2-201ENST00000325404 ADARB2-AS1A8MUL3 147 aa14.34□□□□□ -0.11
SOX2-201ENST00000325404 AKAP9Q99996 3911 aa14.34□□□□□ -0.11
SOX2-201ENST00000325404 FAM19A3Q7Z5A8 133 aa14.34□□□□□ -0.11
SOX2-201ENST00000325404 PRSS2P07478 247 aa14.33□□□□□ -0.12
SOX2-201ENST00000325404 RNASE13Q5GAN3 156 aaKnown RBP14.33□□□□□ -0.12
SOX2-201ENST00000325404 IL17DQ8TAD2 202 aa14.33□□□□□ -0.12
SOX2-201ENST00000325404 H7C2G1 150 aa14.33□□□□□ -0.12
SOX2-201ENST00000325404 NDUFA1O15239 70 aa14.33□□□□□ -0.12
SOX2-201ENST00000325404 SPINK8P0C7L1 97 aa14.33□□□□□ -0.12
SOX2-201ENST00000325404 NOTCH2Q04721 2471 aa14.32□□□□□ -0.12
SOX2-201ENST00000325404 KHDC1LQ5JSQ8 128 aa14.32□□□□□ -0.12
SOX2-201ENST00000325404 TRBV10-2A0A0K0K1G8 114 aa14.32□□□□□ -0.12
SOX2-201ENST00000325404 TRIAP1O43715 76 aa14.32□□□□□ -0.12
SOX2-201ENST00000325404 MTORP42345 2549 aa14.31□□□□□ -0.12
SOX2-201ENST00000325404 RPL13AP40429 203 aaKnown RBP14.31□□□□□ -0.12
SOX2-201ENST00000325404 COX6CP09669 75 aa14.31□□□□□ -0.12
SOX2-201ENST00000325404 XGP55808 180 aa14.31□□□□□ -0.12
SOX2-201ENST00000325404 CSDC2Q9Y534 153 aaKnown RBP14.31□□□□□ -0.12
SOX2-201ENST00000325404 ICOSQ9Y6W8 199 aa14.31□□□□□ -0.12
SOX2-201ENST00000325404 TRBV10-1A0A0K0K1A3 114 aa14.3□□□□□ -0.12
SOX2-201ENST00000325404 MT-ATP8P03928 68 aa14.3□□□□□ -0.12
SOX2-201ENST00000325404 HERVK_113P63121 156 aa14.3□□□□□ -0.12
SOX2-201ENST00000325404 CDKN2A-AS1Q9UH64 79 aa14.3□□□□□ -0.12
SOX2-201ENST00000325404 IGLV5-39A0A0G2JS06 123 aa14.29□□□□□ -0.12
SOX2-201ENST00000325404 ODF3L2Q3SX64 289 aa14.29□□□□□ -0.12
SOX2-201ENST00000325404 IGHV3-38A0A0C4DH36 116 aa14.29□□□□□ -0.12
SOX2-201ENST00000325404 DGAT2L7PQ6IED9 249 aa14.29□□□□□ -0.12
SOX2-201ENST00000325404 RNASE1P07998 156 aaKnown RBP14.28□□□□□ -0.12
SOX2-201ENST00000325404 CKS1BP61024 79 aa14.28□□□□□ -0.12
SOX2-201ENST00000325404 TMEM101Q96IK0 257 aa14.28□□□□□ -0.12
SOX2-201ENST00000325404 CIRBPQ14011 172 aaKnown RBP14.27□□□□□ -0.13
SOX2-201ENST00000325404 STHQ8IWL8 128 aa14.27□□□□□ -0.13
SOX2-201ENST00000325404 C1orf158Q8N1D5 194 aa14.27□□□□□ -0.13
SOX2-201ENST00000325404 IGHV3OR16-12A0A075B7B8 117 aa14.26□□□□□ -0.13
SOX2-201ENST00000325404 A8MZ25 164 aa14.26□□□□□ -0.13
SOX2-201ENST00000325404 DAZ2Q13117 558 aaKnown RBP14.26□□□□□ -0.13
SOX2-201ENST00000325404 DAZ4Q86SG3 579 aaKnown RBP14.26□□□□□ -0.13
SOX2-201ENST00000325404 SMR3AQ99954 134 aa14.26□□□□□ -0.13
SOX2-201ENST00000325404 DAZ3Q9NR90 486 aaKnown RBP14.26□□□□□ -0.13
SOX2-201ENST00000325404 XCL2Q9UBD3 114 aa14.26□□□□□ -0.13
SOX2-201ENST00000325404 HIVEP2P31629 2446 aa14.26□□□□□ -0.13
SOX2-201ENST00000325404 H3BT86 120 aa14.25□□□□□ -0.13
SOX2-201ENST00000325404 COPS9Q8WXC6 57 aa14.25□□□□□ -0.13
SOX2-201ENST00000325404 ANK3Q12955 4377 aaKnown RBP14.25□□□□□ -0.13
SOX2-201ENST00000325404 RPL36AP83881 106 aaKnown RBP14.24□□□□□ -0.13
SOX2-201ENST00000325404 NTN5Q8WTR8 489 aaPredicted RBP14.24□□□□□ -0.13
SOX2-201ENST00000325404 RPL36ALQ969Q0 106 aaKnown RBP14.24□□□□□ -0.13
SOX2-201ENST00000325404 LINC00242Q5T6M2 205 aa14.24□□□□□ -0.13
SOX2-201ENST00000325404 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP14.24□□□□□ -0.13
SOX2-201ENST00000325404 HILS1P60008 231 aa14.23□□□□□ -0.13
SOX2-201ENST00000325404 PPDPFQ9H3Y8 114 aa14.23□□□□□ -0.13
SOX2-201ENST00000325404 TRAV4A0A0B4J268 109 aa14.23□□□□□ -0.13
SOX2-201ENST00000325404 K7EQD1 137 aa14.23□□□□□ -0.13
SOX2-201ENST00000325404 CMC4P56277 68 aaPredicted RBP14.23□□□□□ -0.13
SOX2-201ENST00000325404 C16orf95Q9H693 158 aa14.22□□□□□ -0.13
SOX2-201ENST00000325404 NF1P21359 2839 aa14.22□□□□□ -0.13
SOX2-201ENST00000325404 TRGV1A0A0A0MS02 117 aa14.22□□□□□ -0.13
SOX2-201ENST00000325404 LST1O00453 97 aa14.22□□□□□ -0.13
SOX2-201ENST00000325404 COX6A2Q02221 97 aa14.22□□□□□ -0.13
SOX2-201ENST00000325404 H7C423 109 aa14.21□□□□□ -0.13
SOX2-201ENST00000325404 LY6G6DO95868 133 aa14.21□□□□□ -0.13
SOX2-201ENST00000325404 HIST2H2BDQ6DRA6 164 aa14.21□□□□□ -0.13
SOX2-201ENST00000325404 LINC01006Q8NI28 216 aa14.21□□□□□ -0.13
SOX2-201ENST00000325404 C11orf44Q8N8P7 122 aa14.2□□□□□ -0.14
SOX2-201ENST00000325404 C2orf82Q6UX34 121 aa14.2□□□□□ -0.14
SOX2-201ENST00000325404 UBE2WQ96B02 151 aa14.2□□□□□ -0.14
SOX2-201ENST00000325404 CITED1Q99966 193 aa14.2□□□□□ -0.14
SOX2-201ENST00000325404 LINC00308Q8TCZ7 52 aa14.19□□□□□ -0.14
SOX2-201ENST00000325404 SMIM1B2RUZ4 78 aa14.18□□□□□ -0.14
SOX2-201ENST00000325404 CCL24O00175 119 aa14.18□□□□□ -0.14
SOX2-201ENST00000325404 Q9H8V8 135 aa14.18□□□□□ -0.14
SOX2-201ENST00000325404 LINC00694P0DN24 101 aa14.18□□□□□ -0.14
SOX2-201ENST00000325404 NTM-AS1Q6ZSK4 140 aa14.18□□□□□ -0.14
SOX2-201ENST00000325404 CDC42SE2Q9NRR3 84 aa14.18□□□□□ -0.14
SOX2-201ENST00000325404 A0A1W2PRX2 142 aa14.17□□□□□ -0.14
SOX2-201ENST00000325404 DEFB121Q5J5C9 76 aa14.17□□□□□ -0.14
SOX2-201ENST00000325404 NPC2P61916 151 aa14.17□□□□□ -0.14
SOX2-201ENST00000325404 HERV-K104P63124 156 aa14.17□□□□□ -0.14
SOX2-201ENST00000325404 CITED2Q99967 270 aaPredicted RBP14.17□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 9.4 ms