RNA–Protein interactions for RNA: ENST00000316694.7

SHMT1-201, Transcript of serine hydroxymethyltransferase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHMT1, Length 2,464 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-201ENST00000316694 BEAN1Q3B7T3 259 aa15.87■□□□□ 0.13
SHMT1-201ENST00000316694 AKAP9Q99996 3911 aa15.87■□□□□ 0.13
SHMT1-201ENST00000316694 SONP18583 2426 aaKnown RBP15.86■□□□□ 0.13
SHMT1-201ENST00000316694 RS1O15537 224 aa15.86■□□□□ 0.13
SHMT1-201ENST00000316694 Q8N2B8 174 aa15.86■□□□□ 0.13
SHMT1-201ENST00000316694 EPG5Q9HCE0 2579 aa15.85■□□□□ 0.13
SHMT1-201ENST00000316694 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP15.85■□□□□ 0.13
SHMT1-201ENST00000316694 TEX49A0A1B0GTD5 131 aa15.85■□□□□ 0.13
SHMT1-201ENST00000316694 NF1P21359 2839 aa15.84■□□□□ 0.13
SHMT1-201ENST00000316694 APCP25054 2843 aa15.84■□□□□ 0.13
SHMT1-201ENST00000316694 NOTCH3Q9UM47 2321 aa15.84■□□□□ 0.13
SHMT1-201ENST00000316694 TRBV10-2A0A0K0K1G8 114 aa15.84■□□□□ 0.13
SHMT1-201ENST00000316694 TMEM101Q96IK0 257 aa15.84■□□□□ 0.13
SHMT1-201ENST00000316694 YAE1D1Q9NRH1 226 aa15.84■□□□□ 0.13
SHMT1-201ENST00000316694 COX6A2Q02221 97 aa15.83■□□□□ 0.12
SHMT1-201ENST00000316694 DEFB113Q30KQ7 82 aa15.83■□□□□ 0.12
SHMT1-201ENST00000316694 Q96MF0 132 aa15.83■□□□□ 0.12
SHMT1-201ENST00000316694 TRGV1A0A0A0MS02 117 aa15.83■□□□□ 0.12
SHMT1-201ENST00000316694 COX6CP09669 75 aa15.83■□□□□ 0.12
SHMT1-201ENST00000316694 ZNF843Q8N446 348 aa15.82■□□□□ 0.12
SHMT1-201ENST00000316694 CLEC2BQ92478 149 aa15.82■□□□□ 0.12
SHMT1-201ENST00000316694 RPL13AP40429 203 aaKnown RBP15.81■□□□□ 0.12
SHMT1-201ENST00000316694 TIRAPP58753 221 aa15.81■□□□□ 0.12
SHMT1-201ENST00000316694 ODF3L2Q3SX64 289 aa15.81■□□□□ 0.12
SHMT1-201ENST00000316694 C2orf82Q6UX34 121 aa15.8■□□□□ 0.12
SHMT1-201ENST00000316694 STHQ8IWL8 128 aa15.8■□□□□ 0.12
SHMT1-201ENST00000316694 C11orf44Q8N8P7 122 aa15.8■□□□□ 0.12
SHMT1-201ENST00000316694 ZNF625Q96I27 306 aaPredicted RBP15.8■□□□□ 0.12
SHMT1-201ENST00000316694 NDUFA1O15239 70 aa15.8■□□□□ 0.12
SHMT1-201ENST00000316694 IGLV5-45A0A087WSX0 123 aa15.79■□□□□ 0.12
SHMT1-201ENST00000316694 A0A0U1RRA0 63 aa15.79■□□□□ 0.12
SHMT1-201ENST00000316694 NDUFA7O95182 113 aa15.79■□□□□ 0.12
SHMT1-201ENST00000316694 LINC00694P0DN24 101 aa15.79■□□□□ 0.12
SHMT1-201ENST00000316694 H7C423 109 aa15.79■□□□□ 0.12
SHMT1-201ENST00000316694 TIMM17BO60830 172 aa15.79■□□□□ 0.12
SHMT1-201ENST00000316694 A0A1W2PRX2 142 aa15.78■□□□□ 0.12
SHMT1-201ENST00000316694 UBE2WQ96B02 151 aa15.78■□□□□ 0.12
SHMT1-201ENST00000316694 Q9H8V8 135 aa15.78■□□□□ 0.12
SHMT1-201ENST00000316694 IFITM1P13164 125 aa15.78■□□□□ 0.12
SHMT1-201ENST00000316694 C1orf158Q8N1D5 194 aa15.78■□□□□ 0.12
SHMT1-201ENST00000316694 ITPR3Q14573 2671 aa15.78■□□□□ 0.12
SHMT1-201ENST00000316694 CIRBPQ14011 172 aaKnown RBP15.77■□□□□ 0.12
SHMT1-201ENST00000316694 LINC00242Q5T6M2 205 aa15.77■□□□□ 0.12
SHMT1-201ENST00000316694 C2CD3Q4AC94 2353 aa15.77■□□□□ 0.11
SHMT1-201ENST00000316694 TRAV13-1A0A0B4J241 112 aa15.76■□□□□ 0.11
SHMT1-201ENST00000316694 HERVK_113P63121 156 aa15.76■□□□□ 0.11
SHMT1-201ENST00000316694 RNF183Q96D59 192 aa15.76■□□□□ 0.11
SHMT1-201ENST00000316694 TRAV26-1A0A087WT03 109 aa15.75■□□□□ 0.11
SHMT1-201ENST00000316694 TEX29Q8N6K0 151 aa15.75■□□□□ 0.11
SHMT1-201ENST00000316694 SETD2Q9BYW2 2564 aaPredicted RBP15.75■□□□□ 0.11
SHMT1-201ENST00000316694 TRAV8-4A0A0B4J246 113 aa15.75■□□□□ 0.11
SHMT1-201ENST00000316694 Q6ZTI0 123 aa15.75■□□□□ 0.11
SHMT1-201ENST00000316694 LINC01600Q96MT4 127 aa15.75■□□□□ 0.11
SHMT1-201ENST00000316694 RPL36AP83881 106 aaKnown RBP15.74■□□□□ 0.11
SHMT1-201ENST00000316694 RPL36ALQ969Q0 106 aaKnown RBP15.74■□□□□ 0.11
SHMT1-201ENST00000316694 CCDC168Q8NDH2 2452 aa15.74■□□□□ 0.11
SHMT1-201ENST00000316694 LST1O00453 97 aa15.73■□□□□ 0.11
SHMT1-201ENST00000316694 SNCGO76070 127 aa15.73■□□□□ 0.11
SHMT1-201ENST00000316694 KRTAP1-3Q8IUG1 177 aa15.73■□□□□ 0.11
SHMT1-201ENST00000316694 LINC00308Q8TCZ7 52 aa15.73■□□□□ 0.11
SHMT1-201ENST00000316694 CITED1Q99966 193 aa15.73■□□□□ 0.11
SHMT1-201ENST00000316694 IGLV5-39A0A0G2JS06 123 aa15.73■□□□□ 0.11
SHMT1-201ENST00000316694 K7EQD1 137 aa15.73■□□□□ 0.11
SHMT1-201ENST00000316694 CITED2Q99967 270 aaPredicted RBP15.73■□□□□ 0.11
SHMT1-201ENST00000316694 NTM-AS1Q6ZSK4 140 aa15.72■□□□□ 0.11
SHMT1-201ENST00000316694 JMJD1CQ15652 2540 aa15.72■□□□□ 0.11
SHMT1-201ENST00000316694 GAGE12JA6NER3 117 aa15.72■□□□□ 0.11
SHMT1-201ENST00000316694 CRLF1O75462 422 aa15.72■□□□□ 0.11
SHMT1-201ENST00000316694 GAGE4Q13068 117 aa15.72■□□□□ 0.11
SHMT1-201ENST00000316694 GAGE5Q13069 117 aa15.72■□□□□ 0.11
SHMT1-201ENST00000316694 IL17DQ8TAD2 202 aa15.72■□□□□ 0.11
SHMT1-201ENST00000316694 SMIM1B2RUZ4 78 aa15.71■□□□□ 0.11
SHMT1-201ENST00000316694 H3BT86 120 aa15.71■□□□□ 0.11
SHMT1-201ENST00000316694 CLUHP3Q96NS8 147 aa15.71■□□□□ 0.11
SHMT1-201ENST00000316694 NIPBLQ6KC79 2804 aaeCLIP15.71■□□□□ 0.11
SHMT1-201ENST00000316694 TRAV4A0A0B4J268 109 aa15.71■□□□□ 0.1
SHMT1-201ENST00000316694 ANAPC13Q9BS18 74 aa15.71■□□□□ 0.1
SHMT1-201ENST00000316694 LRRC75A-AS1Q8N1F1 130 aa15.7■□□□□ 0.1
SHMT1-201ENST00000316694 PRIMA1Q86XR5 153 aa15.69■□□□□ 0.1
SHMT1-201ENST00000316694 FLNAP21333 2647 aaKnown RBP15.69■□□□□ 0.1
SHMT1-201ENST00000316694 DAZ2Q13117 558 aaKnown RBP15.69■□□□□ 0.1
SHMT1-201ENST00000316694 MEIG1Q5JSS6 88 aa15.69■□□□□ 0.1
SHMT1-201ENST00000316694 DAZ4Q86SG3 579 aaKnown RBP15.69■□□□□ 0.1
SHMT1-201ENST00000316694 NOP10Q9NPE3 64 aaKnown RBP15.69■□□□□ 0.1
SHMT1-201ENST00000316694 DAZ3Q9NR90 486 aaKnown RBP15.69■□□□□ 0.1
SHMT1-201ENST00000316694 TRAV25A0A0B4J276 109 aa15.68■□□□□ 0.1
SHMT1-201ENST00000316694 TRBV10-1A0A0K0K1A3 114 aa15.68■□□□□ 0.1
SHMT1-201ENST00000316694 GAGE2BQ13066 116 aa15.68■□□□□ 0.1
SHMT1-201ENST00000316694 GAGE2EQ4V326 116 aa15.68■□□□□ 0.1
SHMT1-201ENST00000316694 GAGE2DQ9UEU5 116 aa15.68■□□□□ 0.1
SHMT1-201ENST00000316694 CCL24O00175 119 aa15.68■□□□□ 0.1
SHMT1-201ENST00000316694 SETXQ7Z333 2677 aaKnown RBP15.67■□□□□ 0.1
SHMT1-201ENST00000316694 SOSTDC1Q6X4U4 206 aa15.67■□□□□ 0.1
SHMT1-201ENST00000316694 WFDC11Q8NEX6 87 aa15.67■□□□□ 0.1
SHMT1-201ENST00000316694 CSDC2Q9Y534 153 aaKnown RBP15.67■□□□□ 0.1
SHMT1-201ENST00000316694 CDC42SE2Q9NRR3 84 aa15.66■□□□□ 0.1
SHMT1-201ENST00000316694 DNAJC9-AS1A6NH13 148 aa15.66■□□□□ 0.1
SHMT1-201ENST00000316694 C15orf53Q8NAA6 179 aa15.65■□□□□ 0.1
SHMT1-201ENST00000316694 FAM19A3Q7Z5A8 133 aa15.65■□□□□ 0.1
SHMT1-201ENST00000316694 UBE2L6O14933 153 aa15.64■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms