RNA–Protein interactions for RNA: ENST00000303450.4

HOXC9-201, Transcript of homeobox C9, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXC9, Length 1,516 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9-201ENST00000303450 LINC00336Q6ZUF6 198 aa16.38■□□□□ 0.21
HOXC9-201ENST00000303450 CDC42SE2Q9NRR3 84 aa16.38■□□□□ 0.21
HOXC9-201ENST00000303450 SPANXA1Q9NS26 97 aa16.38■□□□□ 0.21
HOXC9-201ENST00000303450 LINC01546A6NGU7 62 aa16.37■□□□□ 0.21
HOXC9-201ENST00000303450 PSCAO43653 123 aa16.37■□□□□ 0.21
HOXC9-201ENST00000303450 ZNF664Q8N3J9 261 aa16.37■□□□□ 0.21
HOXC9-201ENST00000303450 DNAH10Q8IVF4 4471 aa16.36■□□□□ 0.21
HOXC9-201ENST00000303450 IGKV3OR2-268A0A0C4DH90 116 aa16.36■□□□□ 0.21
HOXC9-201ENST00000303450 LINC00614P0C842 121 aa16.36■□□□□ 0.21
HOXC9-201ENST00000303450 RAB5BP61020 215 aa16.36■□□□□ 0.21
HOXC9-201ENST00000303450 C1orf43Q9BWL3 253 aa16.36■□□□□ 0.21
HOXC9-201ENST00000303450 AP5S1Q9NUS5 200 aa16.36■□□□□ 0.21
HOXC9-201ENST00000303450 COX11Q9Y6N1 276 aa16.36■□□□□ 0.21
HOXC9-201ENST00000303450 PRSS29PA6NIE9 313 aa16.35■□□□□ 0.21
HOXC9-201ENST00000303450 TRAV8-4A0A0B4J246 113 aa16.33■□□□□ 0.2
HOXC9-201ENST00000303450 Q6ZUT4 128 aa16.33■□□□□ 0.2
HOXC9-201ENST00000303450 URB1-AS1Q96HZ7 61 aa16.33■□□□□ 0.2
HOXC9-201ENST00000303450 PYGO1Q9Y3Y4 419 aa16.33■□□□□ 0.2
HOXC9-201ENST00000303450 IGLV10-54A0A075B6I4 117 aa16.32■□□□□ 0.2
HOXC9-201ENST00000303450 TNP2Q05952 138 aa16.32■□□□□ 0.2
HOXC9-201ENST00000303450 RNASE13Q5GAN3 156 aaKnown RBP16.31■□□□□ 0.2
HOXC9-201ENST00000303450 BAGE3Q86Y29 109 aa16.31■□□□□ 0.2
HOXC9-201ENST00000303450 TOMM6Q96B49 74 aa16.31■□□□□ 0.2
HOXC9-201ENST00000303450 MRPS36P82909 103 aaKnown RBP16.3■□□□□ 0.2
HOXC9-201ENST00000303450 OPRPNQ99935 248 aaPredicted RBP16.3■□□□□ 0.2
HOXC9-201ENST00000303450 DNAH17Q9UFH2 4485 aa16.29■□□□□ 0.2
HOXC9-201ENST00000303450 LINC01549A6NIU2 74 aa16.29■□□□□ 0.2
HOXC9-201ENST00000303450 FAM104AQ969W3 186 aa16.28■□□□□ 0.2
HOXC9-201ENST00000303450 CHCHD1Q96BP2 118 aaKnown RBP16.28■□□□□ 0.2
HOXC9-201ENST00000303450 IGLV4-3A0A075B6K6 122 aa16.27■□□□□ 0.2
HOXC9-201ENST00000303450 LINC00959A0A1B0GUT2 108 aa16.27■□□□□ 0.2
HOXC9-201ENST00000303450 TMEM141Q96I45 108 aa16.27■□□□□ 0.2
HOXC9-201ENST00000303450 IGIPA6NJ69 53 aa16.26■□□□□ 0.19
HOXC9-201ENST00000303450 SS18Q15532 418 aa16.26■□□□□ 0.19
HOXC9-201ENST00000303450 SCGB3A1Q96QR1 104 aa16.26■□□□□ 0.19
HOXC9-201ENST00000303450 NPSP0C0P6 89 aa16.25■□□□□ 0.19
HOXC9-201ENST00000303450 Q6ZN92 141 aa16.25■□□□□ 0.19
HOXC9-201ENST00000303450 MAPKAPK5-AS1Q8N8E1 139 aa16.25■□□□□ 0.19
HOXC9-201ENST00000303450 CHCHD10Q8WYQ3 142 aaPredicted RBP16.25■□□□□ 0.19
HOXC9-201ENST00000303450 TIMM17AQ99595 171 aa16.25■□□□□ 0.19
HOXC9-201ENST00000303450 TRAV13-1A0A0B4J241 112 aa16.24■□□□□ 0.19
HOXC9-201ENST00000303450 PMCHL1Q16048 86 aa16.24■□□□□ 0.19
HOXC9-201ENST00000303450 ERASQ7Z444 233 aa16.24■□□□□ 0.19
HOXC9-201ENST00000303450 FAT2Q9NYQ8 4349 aa16.24■□□□□ 0.19
HOXC9-201ENST00000303450 HBDP02042 147 aa16.24■□□□□ 0.19
HOXC9-201ENST00000303450 KRTAP26-1Q6PEX3 210 aa16.24■□□□□ 0.19
HOXC9-201ENST00000303450 A0A087WTM6 91 aa16.23■□□□□ 0.19
HOXC9-201ENST00000303450 C1orf196B1AJZ1 125 aa16.23■□□□□ 0.19
HOXC9-201ENST00000303450 EREGO14944 169 aa16.23■□□□□ 0.19
HOXC9-201ENST00000303450 PAPPA-AS1Q5QFB9 102 aa16.23■□□□□ 0.19
HOXC9-201ENST00000303450 TEX43Q6ZNM6 134 aa16.23■□□□□ 0.19
HOXC9-201ENST00000303450 BAALCQ8WXS3 180 aa16.23■□□□□ 0.19
HOXC9-201ENST00000303450 VCX2Q9H322 139 aa16.23■□□□□ 0.19
HOXC9-201ENST00000303450 A0A096LNJ9 63 aa16.22■□□□□ 0.19
HOXC9-201ENST00000303450 LRCOL1A6NCL2 159 aa16.22■□□□□ 0.19
HOXC9-201ENST00000303450 GAGE12HA6NDE8 117 aa16.22■□□□□ 0.19
HOXC9-201ENST00000303450 IFITM10A6NMD0 228 aa16.22■□□□□ 0.19
HOXC9-201ENST00000303450 CCL25O15444 150 aa16.22■□□□□ 0.19
HOXC9-201ENST00000303450 HIST1H2BKO60814 126 aa16.22■□□□□ 0.19
HOXC9-201ENST00000303450 HIST1H2BJP06899 126 aa16.22■□□□□ 0.19
HOXC9-201ENST00000303450 HIST1H2BOP23527 126 aa16.22■□□□□ 0.19
HOXC9-201ENST00000303450 HIST1H2BBP33778 126 aa16.22■□□□□ 0.19
HOXC9-201ENST00000303450 XCL1P47992 114 aa16.22■□□□□ 0.19
HOXC9-201ENST00000303450 HIST1H2BDP58876 126 aa16.22■□□□□ 0.19
HOXC9-201ENST00000303450 HIST1H2BCP62807 126 aa16.22■□□□□ 0.19
HOXC9-201ENST00000303450 HIST2H2BEQ16778 126 aa16.22■□□□□ 0.19
HOXC9-201ENST00000303450 HIST2H2BFQ5QNW6 126 aaPredicted RBP16.22■□□□□ 0.19
HOXC9-201ENST00000303450 HIST1H2BHQ93079 126 aa16.22■□□□□ 0.19
HOXC9-201ENST00000303450 HIST1H2BNQ99877 126 aa16.22■□□□□ 0.19
HOXC9-201ENST00000303450 HIST1H2BMQ99879 126 aa16.22■□□□□ 0.19
HOXC9-201ENST00000303450 HSBP1O75506 76 aa16.21■□□□□ 0.19
HOXC9-201ENST00000303450 SERF1AO75920 110 aa16.2■□□□□ 0.18
HOXC9-201ENST00000303450 C2orf88Q9BSF0 95 aa16.2■□□□□ 0.18
HOXC9-201ENST00000303450 LECT2O14960 151 aa16.19■□□□□ 0.18
HOXC9-201ENST00000303450 AMELXQ99217 191 aa16.19■□□□□ 0.18
HOXC9-201ENST00000303450 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP16.18■□□□□ 0.18
HOXC9-201ENST00000303450 ZC2HC1BQ5TFG8 222 aa16.18■□□□□ 0.18
HOXC9-201ENST00000303450 WFDC2Q14508 124 aa16.17■□□□□ 0.18
HOXC9-201ENST00000303450 CD164L2Q6UWJ8 174 aa16.17■□□□□ 0.18
HOXC9-201ENST00000303450 A0A1B0GVY2 172 aa16.16■□□□□ 0.18
HOXC9-201ENST00000303450 LINC00310P59036 64 aa16.16■□□□□ 0.18
HOXC9-201ENST00000303450 FOXI1Q12951 378 aa16.16■□□□□ 0.18
HOXC9-201ENST00000303450 PDZD11Q5EBL8 140 aa16.16■□□□□ 0.18
HOXC9-201ENST00000303450 LINC00173Q6ZV60 143 aa16.16■□□□□ 0.18
HOXC9-201ENST00000303450 FAM19A2Q8N3H0 131 aa16.16■□□□□ 0.18
HOXC9-201ENST00000303450 USP17L23D6RBM5 183 aa16.14■□□□□ 0.18
HOXC9-201ENST00000303450 ATP5LO75964 103 aa16.14■□□□□ 0.17
HOXC9-201ENST00000303450 Q8N814 137 aa16.14■□□□□ 0.17
HOXC9-201ENST00000303450 NUPR1O60356 82 aa16.13■□□□□ 0.17
HOXC9-201ENST00000303450 UBE2D1P51668 147 aa16.13■□□□□ 0.17
HOXC9-201ENST00000303450 C14orf177Q52M58 125 aa16.12■□□□□ 0.17
HOXC9-201ENST00000303450 SPATA12Q7Z6I5 190 aa16.12■□□□□ 0.17
HOXC9-201ENST00000303450 HECTD4Q9Y4D8 3996 aa16.1■□□□□ 0.17
HOXC9-201ENST00000303450 PMVKQ15126 192 aa16.1■□□□□ 0.17
HOXC9-201ENST00000303450 LINC00242Q5T6M2 205 aa16.1■□□□□ 0.17
HOXC9-201ENST00000303450 CFAP161Q6P656 301 aa16.1■□□□□ 0.17
HOXC9-201ENST00000303450 PKD1P98161 4303 aa16.1■□□□□ 0.17
HOXC9-201ENST00000303450 COX7A2LO14548 114 aa16.09■□□□□ 0.17
HOXC9-201ENST00000303450 NDUFA6P56556 154 aa16.09■□□□□ 0.17
HOXC9-201ENST00000303450 CST9LQ9H4G1 147 aa16.09■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms