RNA–Protein interactions for RNA: ENST00000249837.7

VPS13C-201, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VPS13C, Length 13,300 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-201ENST00000249837 IGHV4-31P0DP07 118 aa3.4□□□□□ -1.87
VPS13C-201ENST00000249837 KLLNB2CW77 178 aa3.4□□□□□ -1.87
VPS13C-201ENST00000249837 TRACP01848 142 aa3.4□□□□□ -1.87
VPS13C-201ENST00000249837 DEFB113Q30KQ7 82 aa3.4□□□□□ -1.87
VPS13C-201ENST00000249837 Q6ZSV7 163 aa3.4□□□□□ -1.87
VPS13C-201ENST00000249837 HELZ2Q9BYK8 2649 aaKnown RBP3.4□□□□□ -1.87
VPS13C-201ENST00000249837 LECT2O14960 151 aa3.4□□□□□ -1.87
VPS13C-201ENST00000249837 C9orf85Q96MD7 179 aa3.4□□□□□ -1.87
VPS13C-201ENST00000249837 RPL32P62910 135 aaKnown RBP3.4□□□□□ -1.87
VPS13C-201ENST00000249837 HERV-K104P63124 156 aa3.4□□□□□ -1.87
VPS13C-201ENST00000249837 DPH3Q96FX2 82 aa3.4□□□□□ -1.87
VPS13C-201ENST00000249837 TMEM126AQ9H061 195 aa3.4□□□□□ -1.87
VPS13C-201ENST00000249837 CITED2Q99967 270 aaPredicted RBP3.39□□□□□ -1.87
VPS13C-201ENST00000249837 SLPIP03973 132 aa3.39□□□□□ -1.87
VPS13C-201ENST00000249837 DEFB114Q30KQ6 69 aa3.39□□□□□ -1.87
VPS13C-201ENST00000249837 HIST2H2BCQ6DN03 193 aa3.39□□□□□ -1.87
VPS13C-201ENST00000249837 TRBV27A0A0K0K1C4 114 aa3.39□□□□□ -1.87
VPS13C-201ENST00000249837 CRIP2P52943 208 aaPredicted RBP3.39□□□□□ -1.87
VPS13C-201ENST00000249837 COX7A2LO14548 114 aa3.39□□□□□ -1.87
VPS13C-201ENST00000249837 AVPP01185 164 aa3.39□□□□□ -1.87
VPS13C-201ENST00000249837 CCDC179H3BU77 68 aa3.39□□□□□ -1.87
VPS13C-201ENST00000249837 SDIM1Q6ZPB5 146 aa3.39□□□□□ -1.87
VPS13C-201ENST00000249837 COX8CQ7Z4L0 72 aa3.39□□□□□ -1.87
VPS13C-201ENST00000249837 LINC00308Q8TCZ7 52 aa3.39□□□□□ -1.87
VPS13C-201ENST00000249837 HAMPP81172 84 aa3.39□□□□□ -1.87
VPS13C-201ENST00000249837 IGLV1-40P01703 118 aa3.39□□□□□ -1.87
VPS13C-201ENST00000249837 TRAV25A0A0B4J276 109 aa3.39□□□□□ -1.87
VPS13C-201ENST00000249837 NDUFA7O95182 113 aa3.39□□□□□ -1.87
VPS13C-201ENST00000249837 Q6ZSN1 163 aa3.39□□□□□ -1.87
VPS13C-201ENST00000249837 DCANP1Q8TF63 244 aa3.39□□□□□ -1.87
VPS13C-201ENST00000249837 ODF3Q96PU9 254 aa3.39□□□□□ -1.87
VPS13C-201ENST00000249837 K7EQD1 137 aa3.38□□□□□ -1.87
VPS13C-201ENST00000249837 IGLV4-69A0A075B6H9 119 aa3.38□□□□□ -1.87
VPS13C-201ENST00000249837 TIRAPP58753 221 aa3.38□□□□□ -1.87
VPS13C-201ENST00000249837 GCN1Q92616 2671 aaKnown RBP3.38□□□□□ -1.87
VPS13C-201ENST00000249837 NDUFA1O15239 70 aa3.38□□□□□ -1.87
VPS13C-201ENST00000249837 PIK3CD-AS1Q5SR53 167 aa3.38□□□□□ -1.87
VPS13C-201ENST00000249837 ADAMTSL4-AS1Q5T5F5 129 aa3.38□□□□□ -1.87
VPS13C-201ENST00000249837 WFDC11Q8NEX6 87 aa3.38□□□□□ -1.87
VPS13C-201ENST00000249837 UBL5Q9BZL1 73 aa3.38□□□□□ -1.87
VPS13C-201ENST00000249837 ZNF702PQ9H963 129 aa3.38□□□□□ -1.87
VPS13C-201ENST00000249837 NCR3O14931 201 aa3.38□□□□□ -1.87
VPS13C-201ENST00000249837 PSMB8P28062 276 aa3.38□□□□□ -1.87
VPS13C-201ENST00000249837 LINC00643Q86TS7 51 aa3.38□□□□□ -1.87
VPS13C-201ENST00000249837 C16orf74Q96GX8 76 aa3.38□□□□□ -1.87
VPS13C-201ENST00000249837 RNF152Q8N8N0 203 aa3.38□□□□□ -1.87
VPS13C-201ENST00000249837 DEFB105AQ8NG35 78 aa3.38□□□□□ -1.87
VPS13C-201ENST00000249837 SPATA25Q9BR10 227 aa3.38□□□□□ -1.87
VPS13C-201ENST00000249837 WFDC10AQ9H1F0 79 aa3.38□□□□□ -1.87
VPS13C-201ENST00000249837 ACYP1P07311 99 aa3.37□□□□□ -1.87
VPS13C-201ENST00000249837 LOC100131303A0A0U1RQF7 123 aa3.37□□□□□ -1.87
VPS13C-201ENST00000249837 Q6YL49 198 aa3.37□□□□□ -1.87
VPS13C-201ENST00000249837 H7C423 109 aa3.37□□□□□ -1.87
VPS13C-201ENST00000249837 PRORYQ9H606 182 aa3.37□□□□□ -1.87
VPS13C-201ENST00000249837 UBE2D3P61077 147 aa3.37□□□□□ -1.87
VPS13C-201ENST00000249837 UBE2D2P62837 147 aa3.37□□□□□ -1.87
VPS13C-201ENST00000249837 C14orf132Q9NPU4 83 aa3.37□□□□□ -1.87
VPS13C-201ENST00000249837 ORMDL1Q9P0S3 153 aa3.37□□□□□ -1.87
VPS13C-201ENST00000249837 NOTCH1P46531 2555 aa3.37□□□□□ -1.87
VPS13C-201ENST00000249837 POM121L12Q8N7R1 296 aa3.37□□□□□ -1.87
VPS13C-201ENST00000249837 TRAV23DV6A0A075B6W5 121 aa3.37□□□□□ -1.87
VPS13C-201ENST00000249837 KIF25-AS1Q9Y6Z4 181 aa3.37□□□□□ -1.87
VPS13C-201ENST00000249837 PYGO1Q9Y3Y4 419 aa3.37□□□□□ -1.87
VPS13C-201ENST00000249837 SPAG11BQ08648 103 aa3.37□□□□□ -1.87
VPS13C-201ENST00000249837 ATOX1O00244 68 aa3.37□□□□□ -1.87
VPS13C-201ENST00000249837 CITED1Q99966 193 aa3.37□□□□□ -1.87
VPS13C-201ENST00000249837 TRBV10-1A0A0K0K1A3 114 aa3.37□□□□□ -1.87
VPS13C-201ENST00000249837 ZNF561-AS1K7EIQ3 104 aa3.36□□□□□ -1.87
VPS13C-201ENST00000249837 UNC79Q9P2D8 2635 aa3.36□□□□□ -1.87
VPS13C-201ENST00000249837 LST1O00453 97 aa3.36□□□□□ -1.87
VPS13C-201ENST00000249837 KRTAP10-9P60411 292 aa3.36□□□□□ -1.87
VPS13C-201ENST00000249837 TRBV30A0A0K0K1B3 111 aa3.36□□□□□ -1.87
VPS13C-201ENST00000249837 DNAJC9-AS1A6NH13 148 aa3.36□□□□□ -1.87
VPS13C-201ENST00000249837 MRPL23Q16540 153 aaKnown RBP3.36□□□□□ -1.87
VPS13C-201ENST00000249837 C4orf3Q8WVX3 66 aa3.36□□□□□ -1.87
VPS13C-201ENST00000249837 LINC00315P59091 139 aa3.36□□□□□ -1.87
VPS13C-201ENST00000249837 DSCR8Q96T75 97 aa3.36□□□□□ -1.87
VPS13C-201ENST00000249837 COX6A2Q02221 97 aa3.36□□□□□ -1.87
VPS13C-201ENST00000249837 BRCA2P51587 3418 aa3.36□□□□□ -1.87
VPS13C-201ENST00000249837 DEFB135Q30KP9 77 aa3.36□□□□□ -1.87
VPS13C-201ENST00000249837 GHRHP01286 108 aa3.36□□□□□ -1.87
VPS13C-201ENST00000249837 H0YGX0 51 aa3.36□□□□□ -1.87
VPS13C-201ENST00000249837 LINC01546A6NGU7 62 aa3.35□□□□□ -1.87
VPS13C-201ENST00000249837 CFAP54Q96N23 3096 aa3.35□□□□□ -1.87
VPS13C-201ENST00000249837 APOC4P55056 127 aa3.35□□□□□ -1.87
VPS13C-201ENST00000249837 MRPS36P82909 103 aaKnown RBP3.35□□□□□ -1.87
VPS13C-201ENST00000249837 DSPP15924 2871 aaKnown RBP3.35□□□□□ -1.87
VPS13C-201ENST00000249837 HTTP42858 3142 aa3.35□□□□□ -1.87
VPS13C-201ENST00000249837 KLK12Q9UKR0 248 aa3.35□□□□□ -1.87
VPS13C-201ENST00000249837 SMCPP49901 116 aaPredicted RBP3.35□□□□□ -1.87
VPS13C-201ENST00000249837 Q9UF83 564 aa3.35□□□□□ -1.87
VPS13C-201ENST00000249837 SPANXDQ9BXN6 97 aa3.35□□□□□ -1.87
VPS13C-201ENST00000249837 CDIP1Q9H305 208 aa3.35□□□□□ -1.87
VPS13C-201ENST00000249837 SPANXCQ9NY87 97 aa3.35□□□□□ -1.87
VPS13C-201ENST00000249837 PRO0461Q9UI25 63 aa3.35□□□□□ -1.87
VPS13C-201ENST00000249837 SPART-AS1P0CW21 52 aa3.35□□□□□ -1.87
VPS13C-201ENST00000249837 LINC00526Q96FQ7 95 aa3.35□□□□□ -1.87
VPS13C-201ENST00000249837 TIMM17BO60830 172 aa3.35□□□□□ -1.87
VPS13C-201ENST00000249837 LINC00242Q5T6M2 205 aa3.35□□□□□ -1.87
VPS13C-201ENST00000249837 UBE2D4Q9Y2X8 147 aa3.35□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 102.5 ms