RNA–Protein interactions for RNA: ENST00000221232.9

CNOT3-201, Transcript of CCR4-NOT transcription complex subunit 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CNOT3, Length 2,852 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT3-201ENST00000221232 CDKN2A-AS1Q9UH64 79 aa10.55□□□□□ -0.72
CNOT3-201ENST00000221232 ERG28Q9UKR5 140 aa10.55□□□□□ -0.72
CNOT3-201ENST00000221232 PYGO1Q9Y3Y4 419 aa10.55□□□□□ -0.72
CNOT3-201ENST00000221232 A8MTW9 85 aa10.54□□□□□ -0.72
CNOT3-201ENST00000221232 SETXQ7Z333 2677 aaKnown RBP10.53□□□□□ -0.72
CNOT3-201ENST00000221232 IGHV3-33P01772 117 aa10.53□□□□□ -0.72
CNOT3-201ENST00000221232 LINC00694P0DN24 101 aa10.53□□□□□ -0.72
CNOT3-201ENST00000221232 COX6A2Q02221 97 aa10.53□□□□□ -0.72
CNOT3-201ENST00000221232 FOXI1Q12951 378 aa10.53□□□□□ -0.72
CNOT3-201ENST00000221232 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP10.53□□□□□ -0.72
CNOT3-201ENST00000221232 TMEM263Q8WUH6 116 aaKnown RBP10.53□□□□□ -0.72
CNOT3-201ENST00000221232 CITED1Q99966 193 aa10.53□□□□□ -0.72
CNOT3-201ENST00000221232 NOP10Q9NPE3 64 aaKnown RBP10.53□□□□□ -0.72
CNOT3-201ENST00000221232 IGHV1-58A0A0C4DH39 117 aa10.53□□□□□ -0.72
CNOT3-201ENST00000221232 TENM4Q6N022 2769 aa10.52□□□□□ -0.72
CNOT3-201ENST00000221232 TRAV13-1A0A0B4J241 112 aa10.52□□□□□ -0.72
CNOT3-201ENST00000221232 GAGE12JA6NER3 117 aa10.52□□□□□ -0.72
CNOT3-201ENST00000221232 GAGE4Q13068 117 aa10.52□□□□□ -0.72
CNOT3-201ENST00000221232 GAGE5Q13069 117 aa10.52□□□□□ -0.72
CNOT3-201ENST00000221232 C9JAW5 83 aa10.52□□□□□ -0.73
CNOT3-201ENST00000221232 YAE1D1Q9NRH1 226 aa10.52□□□□□ -0.73
CNOT3-201ENST00000221232 RS1O15537 224 aa10.51□□□□□ -0.73
CNOT3-201ENST00000221232 LRRC75A-AS1Q8N1F1 130 aa10.51□□□□□ -0.73
CNOT3-201ENST00000221232 VSIG2Q96IQ7 327 aa10.51□□□□□ -0.73
CNOT3-201ENST00000221232 C1QTNF4Q9BXJ3 329 aa10.51□□□□□ -0.73
CNOT3-201ENST00000221232 ITPR2Q14571 2701 aa10.51□□□□□ -0.73
CNOT3-201ENST00000221232 FN1P02751 2386 aaKnown RBP10.51□□□□□ -0.73
CNOT3-201ENST00000221232 SPANXA1Q9NS26 97 aa10.51□□□□□ -0.73
CNOT3-201ENST00000221232 BEAN1Q3B7T3 259 aa10.5□□□□□ -0.73
CNOT3-201ENST00000221232 CARD19Q96LW7 228 aa10.5□□□□□ -0.73
CNOT3-201ENST00000221232 LITAFQ99732 161 aa10.5□□□□□ -0.73
CNOT3-201ENST00000221232 NOTCH2Q04721 2471 aa10.5□□□□□ -0.73
CNOT3-201ENST00000221232 TINCRA0A1B0GVN0 87 aa10.5□□□□□ -0.73
CNOT3-201ENST00000221232 LYRM7Q5U5X0 104 aa10.5□□□□□ -0.73
CNOT3-201ENST00000221232 GAGE7O76087 117 aa10.49□□□□□ -0.73
CNOT3-201ENST00000221232 GAGE12FP0CL80 117 aa10.49□□□□□ -0.73
CNOT3-201ENST00000221232 GAGE12GP0CL81 117 aa10.49□□□□□ -0.73
CNOT3-201ENST00000221232 GAGE12IP0CL82 117 aa10.49□□□□□ -0.73
CNOT3-201ENST00000221232 IGKV3OR2-268A0A0C4DH90 116 aa10.49□□□□□ -0.73
CNOT3-201ENST00000221232 LOC100131303A0A0U1RQF7 123 aa10.49□□□□□ -0.73
CNOT3-201ENST00000221232 EDA2RQ9HAV5 297 aa10.49□□□□□ -0.73
CNOT3-201ENST00000221232 ANKRD29Q8N6D5 301 aa10.48□□□□□ -0.73
CNOT3-201ENST00000221232 TRBV20-1A0A075B6N2 111 aa10.48□□□□□ -0.73
CNOT3-201ENST00000221232 LINC01006Q8NI28 216 aa10.48□□□□□ -0.73
CNOT3-201ENST00000221232 TMEM101Q96IK0 257 aa10.48□□□□□ -0.73
CNOT3-201ENST00000221232 FHL3Q13643 280 aa10.48□□□□□ -0.73
CNOT3-201ENST00000221232 NTM-AS1Q6ZSK4 140 aa10.48□□□□□ -0.73
CNOT3-201ENST00000221232 TRGV2A0A075B6R0 118 aa10.47□□□□□ -0.73
CNOT3-201ENST00000221232 SLC25A20O43772 301 aa10.47□□□□□ -0.73
CNOT3-201ENST00000221232 DNAJC30Q96LL9 226 aa10.47□□□□□ -0.73
CNOT3-201ENST00000221232 NBEAL2Q6ZNJ1 2754 aa10.46□□□□□ -0.73
CNOT3-201ENST00000221232 TRIAP1O43715 76 aa10.46□□□□□ -0.73
CNOT3-201ENST00000221232 RPL36AP83881 106 aaKnown RBP10.46□□□□□ -0.73
CNOT3-201ENST00000221232 RPL36ALQ969Q0 106 aaKnown RBP10.46□□□□□ -0.73
CNOT3-201ENST00000221232 RNF183Q96D59 192 aa10.46□□□□□ -0.73
CNOT3-201ENST00000221232 TRAV16A0A0A6YYK6 109 aaPredicted RBP10.46□□□□□ -0.74
CNOT3-201ENST00000221232 A0A0B4J2C4 111 aa10.45□□□□□ -0.74
CNOT3-201ENST00000221232 TEN1Q86WV5 123 aa10.45□□□□□ -0.74
CNOT3-201ENST00000221232 LINC00242Q5T6M2 205 aa10.45□□□□□ -0.74
CNOT3-201ENST00000221232 SMR3AQ99954 134 aa10.45□□□□□ -0.74
CNOT3-201ENST00000221232 SPATA25Q9BR10 227 aa10.45□□□□□ -0.74
CNOT3-201ENST00000221232 Q9H8V8 135 aa10.45□□□□□ -0.74
CNOT3-201ENST00000221232 K7EQD1 137 aa10.44□□□□□ -0.74
CNOT3-201ENST00000221232 GIG44P09565 113 aaPredicted RBP10.44□□□□□ -0.74
CNOT3-201ENST00000221232 PIK3CD-AS1Q5SR53 167 aa10.44□□□□□ -0.74
CNOT3-201ENST00000221232 SMIM20Q8N5G0 67 aa10.44□□□□□ -0.74
CNOT3-201ENST00000221232 CLEC2BQ92478 149 aa10.44□□□□□ -0.74
CNOT3-201ENST00000221232 MIAQ16674 131 aa10.44□□□□□ -0.74
CNOT3-201ENST00000221232 TMEM86BQ8N661 226 aa10.44□□□□□ -0.74
CNOT3-201ENST00000221232 PPDPFLQ8WWR9 84 aa10.44□□□□□ -0.74
CNOT3-201ENST00000221232 CDIP1Q9H305 208 aa10.43□□□□□ -0.74
CNOT3-201ENST00000221232 TRAV25A0A0B4J276 109 aa10.43□□□□□ -0.74
CNOT3-201ENST00000221232 ZFAND6Q6FIF0 208 aa10.43□□□□□ -0.74
CNOT3-201ENST00000221232 MT-ATP8P03928 68 aa10.42□□□□□ -0.74
CNOT3-201ENST00000221232 B5MCH6 92 aa10.42□□□□□ -0.74
CNOT3-201ENST00000221232 NTN5Q8WTR8 489 aaPredicted RBP10.42□□□□□ -0.74
CNOT3-201ENST00000221232 PDZD2O15018 2839 aa10.41□□□□□ -0.74
CNOT3-201ENST00000221232 FASNP49327 2511 aaKnown RBP10.41□□□□□ -0.74
CNOT3-201ENST00000221232 UBE2L6O14933 153 aa10.41□□□□□ -0.74
CNOT3-201ENST00000221232 ICOSQ9Y6W8 199 aa10.41□□□□□ -0.74
CNOT3-201ENST00000221232 HELZ2Q9BYK8 2649 aaKnown RBP10.41□□□□□ -0.74
CNOT3-201ENST00000221232 RPL13AP40429 203 aaKnown RBP10.4□□□□□ -0.74
CNOT3-201ENST00000221232 GAGE6Q13070 117 aa10.4□□□□□ -0.74
CNOT3-201ENST00000221232 ATXN8Q156A1 80 aa10.4□□□□□ -0.74
CNOT3-201ENST00000221232 LINC01620Q4KN68 170 aa10.4□□□□□ -0.74
CNOT3-201ENST00000221232 ATP6V0E2Q8NHE4 81 aa10.4□□□□□ -0.74
CNOT3-201ENST00000221232 TRGV4A0A0C4DH28 118 aa10.4□□□□□ -0.74
CNOT3-201ENST00000221232 MEIG1Q5JSS6 88 aa10.4□□□□□ -0.74
CNOT3-201ENST00000221232 SPANXDQ9BXN6 97 aa10.4□□□□□ -0.74
CNOT3-201ENST00000221232 SPANXCQ9NY87 97 aa10.4□□□□□ -0.74
CNOT3-201ENST00000221232 XGP55808 180 aa10.4□□□□□ -0.75
CNOT3-201ENST00000221232 TIRAPP58753 221 aa10.4□□□□□ -0.75
CNOT3-201ENST00000221232 KRTAP1-1Q07627 177 aa10.4□□□□□ -0.75
CNOT3-201ENST00000221232 IL17DQ8TAD2 202 aa10.4□□□□□ -0.75
CNOT3-201ENST00000221232 HIVEP2P31629 2446 aa10.39□□□□□ -0.75
CNOT3-201ENST00000221232 TRAV4A0A0B4J268 109 aa10.39□□□□□ -0.75
CNOT3-201ENST00000221232 TEX49A0A1B0GTD5 131 aa10.39□□□□□ -0.75
CNOT3-201ENST00000221232 DEFB130BP0DP73 79 aa10.39□□□□□ -0.75
CNOT3-201ENST00000221232 DEFB130AP0DP74 79 aa10.39□□□□□ -0.75
CNOT3-201ENST00000221232 PRIMA1Q86XR5 153 aa10.39□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 75.3 ms