RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 PRKAB2O43741 272 aa17.5■□□□□ 0.39
UPF1-204ENST00000596842 MBD4O95243 580 aa17.5■□□□□ 0.39
UPF1-204ENST00000596842 EVCP57679 992 aa17.5■□□□□ 0.39
UPF1-204ENST00000596842 BMS1Q14692 1282 aaKnown RBP17.5■□□□□ 0.39
UPF1-204ENST00000596842 FOXP4Q8IVH2 680 aaPredicted RBP17.5■□□□□ 0.39
UPF1-204ENST00000596842 DIS3L2Q8IYB7 885 aaKnown RBP17.5■□□□□ 0.39
UPF1-204ENST00000596842 IRX2Q9BZI1 471 aaPredicted RBP17.5■□□□□ 0.39
UPF1-204ENST00000596842 SERTAD1Q9UHV2 236 aa17.5■□□□□ 0.39
UPF1-204ENST00000596842 IRX5P78411 483 aaPredicted RBP17.5■□□□□ 0.39
UPF1-204ENST00000596842 PES1O00541 588 aaKnown RBP17.5■□□□□ 0.39
UPF1-204ENST00000596842 ZCCHC17Q9NP64 241 aaKnown RBP17.5■□□□□ 0.39
UPF1-204ENST00000596842 ZMYM6O95789 1325 aa17.49■□□□□ 0.39
UPF1-204ENST00000596842 KIF13AQ9H1H9 1805 aa17.49■□□□□ 0.39
UPF1-204ENST00000596842 PRR29P0C7W0 189 aa17.49■□□□□ 0.39
UPF1-204ENST00000596842 CASQ1P31415 396 aa17.49■□□□□ 0.39
UPF1-204ENST00000596842 BAG1Q99933 345 aaPredicted RBP17.49■□□□□ 0.39
UPF1-204ENST00000596842 ABCF2Q9UG63 623 aa17.49■□□□□ 0.39
UPF1-204ENST00000596842 ANKRD18BA2A2Z9 1011 aa17.49■□□□□ 0.39
UPF1-204ENST00000596842 GABPB1Q06547 395 aaPredicted RBP17.49■□□□□ 0.39
UPF1-204ENST00000596842 DHX58Q96C10 678 aa17.49■□□□□ 0.39
UPF1-204ENST00000596842 SAMSN1Q9NSI8 373 aaKnown RBP17.49■□□□□ 0.39
UPF1-204ENST00000596842 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.49■□□□□ 0.39
UPF1-204ENST00000596842 CHD2O14647 1828 aaKnown RBP17.49■□□□□ 0.39
UPF1-204ENST00000596842 RANBP6O60518 1105 aaKnown RBP17.49■□□□□ 0.39
UPF1-204ENST00000596842 SLC4A8Q2Y0W8 1093 aa17.49■□□□□ 0.39
UPF1-204ENST00000596842 KRBA2Q6ZNG9 492 aa17.49■□□□□ 0.39
UPF1-204ENST00000596842 USP49Q70CQ1 688 aa17.49■□□□□ 0.39
UPF1-204ENST00000596842 NBPF3Q9H094 633 aa17.49■□□□□ 0.39
UPF1-204ENST00000596842 CABP5Q9NP86 173 aa17.49■□□□□ 0.39
UPF1-204ENST00000596842 ZSWIM5Q9P217 1185 aa17.49■□□□□ 0.39
UPF1-204ENST00000596842 PSDA5PKW4 1024 aaPredicted RBP17.48■□□□□ 0.39
UPF1-204ENST00000596842 PDE6AP16499 860 aa17.48■□□□□ 0.39
UPF1-204ENST00000596842 SMYD4Q8IYR2 804 aaPredicted RBP17.48■□□□□ 0.39
UPF1-204ENST00000596842 CCDC12Q8WUD4 166 aaPredicted RBP17.48■□□□□ 0.39
UPF1-204ENST00000596842 RGPD5Q99666 1765 aa17.48■□□□□ 0.39
UPF1-204ENST00000596842 SH2B2O14492 632 aaPredicted RBP17.48■□□□□ 0.39
UPF1-204ENST00000596842 TRIM22Q8IYM9 498 aa17.48■□□□□ 0.39
UPF1-204ENST00000596842 KRI1Q8N9T8 703 aaKnown RBP17.48■□□□□ 0.39
UPF1-204ENST00000596842 WDR24Q96S15 920 aa17.48■□□□□ 0.39
UPF1-204ENST00000596842 PPP2R2CQ9Y2T4 447 aa17.48■□□□□ 0.39
UPF1-204ENST00000596842 IRS4O14654 1257 aaPredicted RBP17.48■□□□□ 0.39
UPF1-204ENST00000596842 CIAO1O76071 339 aa17.48■□□□□ 0.39
UPF1-204ENST00000596842 ADD2P35612 726 aa17.48■□□□□ 0.39
UPF1-204ENST00000596842 MTF1Q14872 753 aa17.48■□□□□ 0.39
UPF1-204ENST00000596842 TOGARAM2Q6ZUX3 1019 aa17.48■□□□□ 0.39
UPF1-204ENST00000596842 SMARCE1Q969G3 411 aa17.48■□□□□ 0.39
UPF1-204ENST00000596842 GNL3Q9BVP2 549 aaKnown RBP eCLIP17.48■□□□□ 0.39
UPF1-204ENST00000596842 PUF60Q9UHX1 559 aaKnown RBP17.48■□□□□ 0.39
UPF1-204ENST00000596842 ERICH2A1L162 156 aa17.47■□□□□ 0.39
UPF1-204ENST00000596842 MTMR7Q9Y216 660 aa17.47■□□□□ 0.39
UPF1-204ENST00000596842 C5P01031 1676 aa17.47■□□□□ 0.39
UPF1-204ENST00000596842 ZSCAN12O43309 604 aa17.47■□□□□ 0.39
UPF1-204ENST00000596842 C10orf67Q8IYJ2 551 aa17.47■□□□□ 0.39
UPF1-204ENST00000596842 GYS2P54840 703 aa17.47■□□□□ 0.39
UPF1-204ENST00000596842 AKAP17AQ02040 695 aaKnown RBP17.47■□□□□ 0.39
UPF1-204ENST00000596842 FMR1Q06787 632 aaKnown RBP eCLIP17.47■□□□□ 0.394e-6■■■■□ 21.6
UPF1-204ENST00000596842 PCDHB6Q9Y5E3 794 aa17.47■□□□□ 0.39
UPF1-204ENST00000596842 OVOS2A0A0G2JMS6 1433 aa17.47■□□□□ 0.39
UPF1-204ENST00000596842 UBN2Q6ZU65 1347 aa17.47■□□□□ 0.39
UPF1-204ENST00000596842 AFDNP55196 1824 aaKnown RBP17.46■□□□□ 0.39
UPF1-204ENST00000596842 MFSD6Q6ZSS7 791 aa17.46■□□□□ 0.39
UPF1-204ENST00000596842 HSD3B7Q9H2F3 369 aa17.46■□□□□ 0.39
UPF1-204ENST00000596842 PNMA6AP0CW24 399 aaPredicted RBP17.46■□□□□ 0.39
UPF1-204ENST00000596842 POSTNQ15063 836 aa17.46■□□□□ 0.39
UPF1-204ENST00000596842 CALCOCO1Q9P1Z2 691 aa17.46■□□□□ 0.39
UPF1-204ENST00000596842 HOOK1Q9UJC3 728 aaKnown RBP17.46■□□□□ 0.39
UPF1-204ENST00000596842 PRDM1O75626 825 aa17.46■□□□□ 0.39
UPF1-204ENST00000596842 VSTM4Q8IW00 320 aa17.46■□□□□ 0.39
UPF1-204ENST00000596842 BMP6P22004 513 aa17.45■□□□□ 0.38
UPF1-204ENST00000596842 OXER1Q8TDS5 423 aa17.45■□□□□ 0.38
UPF1-204ENST00000596842 LRP2BPQ9P2M1 347 aa17.45■□□□□ 0.38
UPF1-204ENST00000596842 BAZ2BQ9UIF8 2168 aaKnown RBP17.45■□□□□ 0.38
UPF1-204ENST00000596842 PCDH11XQ9BZA7 1347 aa17.45■□□□□ 0.38
UPF1-204ENST00000596842 PCDH11YQ9BZA8 1340 aa17.45■□□□□ 0.38
UPF1-204ENST00000596842 IKBKBO14920 756 aa17.45■□□□□ 0.38
UPF1-204ENST00000596842 CCP110O43303 1012 aa17.45■□□□□ 0.38
UPF1-204ENST00000596842 RTN1Q16799 776 aa17.45■□□□□ 0.38
UPF1-204ENST00000596842 NEK11Q8NG66 645 aa17.45■□□□□ 0.38
UPF1-204ENST00000596842 RNF216Q9NWF9 866 aaPredicted RBP17.45■□□□□ 0.38
UPF1-204ENST00000596842 SLC4A4Q9Y6R1 1079 aa17.45■□□□□ 0.38
UPF1-204ENST00000596842 FAM205CA6NFA0 338 aa17.45■□□□□ 0.38
UPF1-204ENST00000596842 PTPAQ15257 358 aa17.45■□□□□ 0.38
UPF1-204ENST00000596842 NOSTRINQ8IVI9 506 aa17.45■□□□□ 0.38
UPF1-204ENST00000596842 MAN1B1Q9UKM7 699 aa17.45■□□□□ 0.38
UPF1-204ENST00000596842 FER1L4A9Z1Z3 1794 aa17.45■□□□□ 0.38
UPF1-204ENST00000596842 WTAPQ15007 396 aa17.44■□□□□ 0.38
UPF1-204ENST00000596842 MPHOSPH8Q99549 860 aa17.44■□□□□ 0.38
UPF1-204ENST00000596842 BPIFA3Q9BQP9 254 aa17.44■□□□□ 0.38
UPF1-204ENST00000596842 SMIM22K7EJ46 135 aa17.44■□□□□ 0.38
UPF1-204ENST00000596842 CUTAO60888 179 aa17.44■□□□□ 0.38
UPF1-204ENST00000596842 RESP18Q5W5W9 173 aa17.44■□□□□ 0.38
UPF1-204ENST00000596842 IFNL3Q8IZI9 196 aa17.44■□□□□ 0.38
UPF1-204ENST00000596842 TTLL11Q8NHH1 800 aa17.44■□□□□ 0.38
UPF1-204ENST00000596842 C1orf167Q5SNV9 1468 aa17.44■□□□□ 0.38
UPF1-204ENST00000596842 FANCGO15287 622 aa17.44■□□□□ 0.38
UPF1-204ENST00000596842 L2HGDHQ9H9P8 463 aa17.44■□□□□ 0.38
UPF1-204ENST00000596842 LY9Q9HBG7 655 aa17.44■□□□□ 0.38
UPF1-204ENST00000596842 VPS54Q9P1Q0 977 aa17.44■□□□□ 0.38
UPF1-204ENST00000596842 MAPK8IP1Q9UQF2 711 aa17.44■□□□□ 0.38
UPF1-204ENST00000596842 SOWAHDA6NJG2 315 aa17.43■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms