RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 SPTY2D1Q68D10 685 aaPredicted RBP26.11■■□□□ 1.77
VPS53-216ENST00000574029 SCYL3Q8IZE3 742 aa26.11■■□□□ 1.77
VPS53-216ENST00000574029 TRIM47Q96LD4 638 aa26.11■■□□□ 1.77
VPS53-216ENST00000574029 SRRDQ9UH36 339 aa26.11■■□□□ 1.77
VPS53-216ENST00000574029 MVPQ14764 893 aaKnown RBP26.1■■□□□ 1.77
VPS53-216ENST00000574029 DOCK1Q14185 1865 aa26.09■■□□□ 1.77
VPS53-216ENST00000574029 CCER2I3L3R5 266 aa26.09■■□□□ 1.77
VPS53-216ENST00000574029 ECM2O94769 699 aaPredicted RBP26.09■■□□□ 1.77
VPS53-216ENST00000574029 MYCP01106 439 aaPredicted RBP26.09■■□□□ 1.77
VPS53-216ENST00000574029 BTDP43251 543 aa26.09■■□□□ 1.77
VPS53-216ENST00000574029 PARK7Q99497 189 aaKnown RBP26.09■■□□□ 1.77
VPS53-216ENST00000574029 DDX4Q9NQI0 724 aaKnown RBP26.09■■□□□ 1.77
VPS53-216ENST00000574029 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP26.09■■□□□ 1.77
VPS53-216ENST00000574029 ZHX2Q9Y6X8 837 aa26.09■■□□□ 1.77
VPS53-216ENST00000574029 MROH7-TTC4A0A0A0MT08 1334 aa26.09■■□□□ 1.77
VPS53-216ENST00000574029 A0A0G2JLL6 359 aaPredicted RBP26.08■■□□□ 1.77
VPS53-216ENST00000574029 DDTLA6NHG4 134 aaPredicted RBP26.08■■□□□ 1.77
VPS53-216ENST00000574029 PTPRAP18433 802 aa26.08■■□□□ 1.77
VPS53-216ENST00000574029 OSBPP22059 807 aa26.08■■□□□ 1.77
VPS53-216ENST00000574029 HOXD10P28358 340 aa26.08■■□□□ 1.77
VPS53-216ENST00000574029 HABP4Q5JVS0 413 aaKnown RBP26.08■■□□□ 1.77
VPS53-216ENST00000574029 PRRT2Q7Z6L0 340 aaPredicted RBP26.08■■□□□ 1.77
VPS53-216ENST00000574029 ZSCAN29Q8IWY8 852 aaPredicted RBP26.08■■□□□ 1.77
VPS53-216ENST00000574029 PICK1Q9NRD5 415 aa26.08■■□□□ 1.77
VPS53-216ENST00000574029 PHIPQ8WWQ0 1821 aa26.08■■□□□ 1.77
VPS53-216ENST00000574029 MGAMO43451 1857 aa26.08■■□□□ 1.77
VPS53-216ENST00000574029 PTPRFP10586 1907 aa26.08■■□□□ 1.76
VPS53-216ENST00000574029 GPR75-ASB3A0A0A6YYF3 556 aa26.07■■□□□ 1.76
VPS53-216ENST00000574029 BCRP11274 1271 aa26.07■■□□□ 1.76
VPS53-216ENST00000574029 FASTKD5Q7L8L6 764 aaKnown RBP26.07■■□□□ 1.76
VPS53-216ENST00000574029 AFG3L2Q9Y4W6 797 aa26.07■■□□□ 1.76
VPS53-216ENST00000574029 FMNL1O95466 1100 aaPredicted RBP26.06■■□□□ 1.76
VPS53-216ENST00000574029 CYP2C8P10632 490 aa26.06■■□□□ 1.76
VPS53-216ENST00000574029 MECOMQ03112 1051 aa26.06■■□□□ 1.76
VPS53-216ENST00000574029 ERICH6Q7L0X2 663 aa26.06■■□□□ 1.76
VPS53-216ENST00000574029 ZNF384Q8TF68 577 aa26.06■■□□□ 1.76
VPS53-216ENST00000574029 CTNND1O60716 968 aaKnown RBP26.05■■□□□ 1.76
VPS53-216ENST00000574029 SLURP2P0DP57 97 aa26.05■■□□□ 1.76
VPS53-216ENST00000574029 RHBDL3P58872 404 aa26.05■■□□□ 1.76
VPS53-216ENST00000574029 PICALMQ13492 652 aa26.05■■□□□ 1.76
VPS53-216ENST00000574029 NEUROD6Q96NK8 337 aa26.05■■□□□ 1.76
VPS53-216ENST00000574029 HMG20BQ9P0W2 317 aa26.05■■□□□ 1.76
VPS53-216ENST00000574029 MYPNQ86TC9 1320 aa26.05■■□□□ 1.76
VPS53-216ENST00000574029 IPO8O15397 1037 aaKnown RBP26.04■■□□□ 1.76
VPS53-216ENST00000574029 NPM3O75607 178 aaKnown RBP26.04■■□□□ 1.76
VPS53-216ENST00000574029 TRIM27P14373 513 aa26.04■■□□□ 1.76
VPS53-216ENST00000574029 MTFR1Q15390 333 aa26.04■■□□□ 1.76
VPS53-216ENST00000574029 RAET1EQ8TD07 263 aa26.04■■□□□ 1.76
VPS53-216ENST00000574029 SLC45A1Q9Y2W3 748 aa26.04■■□□□ 1.76
VPS53-216ENST00000574029 GRK4P32298 578 aa26.03■■□□□ 1.76
VPS53-216ENST00000574029 SPATA5Q8NB90 893 aa26.03■■□□□ 1.76
VPS53-216ENST00000574029 TBC1D12O60347 775 aa26.02■■□□□ 1.76
VPS53-216ENST00000574029 GNAI2P04899 355 aa26.02■■□□□ 1.76
VPS53-216ENST00000574029 FCGRTP55899 365 aa26.02■■□□□ 1.76
VPS53-216ENST00000574029 ATF7IPQ6VMQ6 1270 aa26.02■■□□□ 1.76
VPS53-216ENST00000574029 NSUN4Q96CB9 384 aaKnown RBP26.02■■□□□ 1.76
VPS53-216ENST00000574029 TNNQ9UQP3 1299 aa26.02■■□□□ 1.76
VPS53-216ENST00000574029 MAP4K4O95819 1239 aaPredicted RBP26.01■■□□□ 1.75
VPS53-216ENST00000574029 COL2A1P02458 1487 aaPredicted RBP26.01■■□□□ 1.75
VPS53-216ENST00000574029 ARID4AP29374 1257 aaPredicted RBP26.01■■□□□ 1.75
VPS53-216ENST00000574029 GSTO1P78417 241 aa26.01■■□□□ 1.75
VPS53-216ENST00000574029 PI16Q6UXB8 463 aa26.01■■□□□ 1.75
VPS53-216ENST00000574029 GADL1Q6ZQY3 521 aa26.01■■□□□ 1.75
VPS53-216ENST00000574029 SHISA4Q96DD7 197 aa26.01■■□□□ 1.75
VPS53-216ENST00000574029 PNMA6EA0A0J9YXQ4 647 aa26■■□□□ 1.75
VPS53-216ENST00000574029 LDHCP07864 332 aa26■■□□□ 1.75
VPS53-216ENST00000574029 PRKCZQ05513 592 aa26■■□□□ 1.75
VPS53-216ENST00000574029 GORABQ5T7V8 394 aa26■■□□□ 1.75
VPS53-216ENST00000574029 TBC1D9Q6ZT07 1266 aa26■■□□□ 1.75
VPS53-216ENST00000574029 BCAR3O75815 825 aa25.99■■□□□ 1.75
VPS53-216ENST00000574029 FRMD4AQ9P2Q2 1039 aaPredicted RBP25.99■■□□□ 1.75
VPS53-216ENST00000574029 G3BP1Q13283 466 aaKnown RBP eCLIP25.98■■□□□ 1.75
VPS53-216ENST00000574029 NKX2-3Q8TAU0 364 aa25.98■■□□□ 1.75
VPS53-216ENST00000574029 FRAT1Q92837 279 aaPredicted RBP25.98■■□□□ 1.75
VPS53-216ENST00000574029 GABRQQ9UN88 632 aa25.98■■□□□ 1.75
VPS53-216ENST00000574029 ATAD5Q96QE3 1844 aa25.98■■□□□ 1.75
VPS53-216ENST00000574029 TRIM75PA6NK02 468 aa25.97■■□□□ 1.75
VPS53-216ENST00000574029 GJB1P08034 283 aa25.97■■□□□ 1.75
VPS53-216ENST00000574029 CCL5P13501 91 aa25.97■■□□□ 1.75
VPS53-216ENST00000574029 MCAMP43121 646 aa25.97■■□□□ 1.75
VPS53-216ENST00000574029 GJA8P48165 433 aa25.97■■□□□ 1.75
VPS53-216ENST00000574029 CCDC84Q86UT8 332 aaPredicted RBP25.97■■□□□ 1.75
VPS53-216ENST00000574029 SLAIN1Q8ND83 568 aa25.97■■□□□ 1.75
VPS53-216ENST00000574029 OSBPL5Q9H0X9 879 aaPredicted RBP25.97■■□□□ 1.75
VPS53-216ENST00000574029 XPO5Q9HAV4 1204 aaKnown RBP eCLIP25.97■■□□□ 1.75
VPS53-216ENST00000574029 RAI14Q9P0K7 980 aa25.97■■□□□ 1.75
VPS53-216ENST00000574029 AGTPBP1Q9UPW5 1226 aa25.97■■□□□ 1.75
VPS53-216ENST00000574029 UQCRFS1P1P0C7P4 283 aa25.96■■□□□ 1.75
VPS53-216ENST00000574029 UBXN2AP68543 259 aa25.96■■□□□ 1.75
VPS53-216ENST00000574029 CLUAP1Q96AJ1 413 aa25.96■■□□□ 1.75
VPS53-216ENST00000574029 LOC285556D6RIA3 1793 aa25.95■■□□□ 1.75
VPS53-216ENST00000574029 FAM196BA6NMK8 535 aa25.95■■□□□ 1.74
VPS53-216ENST00000574029 SMCR8Q8TEV9 937 aaPredicted RBP25.95■■□□□ 1.74
VPS53-216ENST00000574029 BIN2Q9UBW5 565 aaPredicted RBP25.95■■□□□ 1.74
VPS53-216ENST00000574029 COLQQ9Y215 455 aaPredicted RBP25.95■■□□□ 1.74
VPS53-216ENST00000574029 UBE2Q1Q7Z7E8 422 aa25.94■■□□□ 1.74
VPS53-216ENST00000574029 RNF208Q9H0X6 261 aa25.94■■□□□ 1.74
VPS53-216ENST00000574029 MAST2Q6P0Q8 1798 aa25.94■■□□□ 1.74
VPS53-216ENST00000574029 H0YGN5 161 aa25.93■■□□□ 1.74
VPS53-216ENST00000574029 TREML2Q5T2D2 321 aa25.93■■□□□ 1.74
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms