RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 DDTLA6NHG4 134 aaPredicted RBP8.36□□□□□ -1.07
VPS53-213ENST00000572334 SEMA3EO15041 775 aa8.36□□□□□ -1.07
VPS53-213ENST00000572334 TRIM27P14373 513 aa8.36□□□□□ -1.07
VPS53-213ENST00000572334 RHBDL3P58872 404 aa8.36□□□□□ -1.07
VPS53-213ENST00000572334 TFCP2Q12800 502 aa8.36□□□□□ -1.07
VPS53-213ENST00000572334 GPAT2Q6NUI2 795 aa8.36□□□□□ -1.07
VPS53-213ENST00000572334 HOOK2Q96ED9 719 aa8.36□□□□□ -1.07
VPS53-213ENST00000572334 FAM163AQ96GL9 167 aaPredicted RBP8.36□□□□□ -1.07
VPS53-213ENST00000572334 XAGE2Q96GT9 111 aa8.36□□□□□ -1.07
VPS53-213ENST00000572334 ALPK3Q96L96 1907 aa8.36□□□□□ -1.07
VPS53-213ENST00000572334 RANBP2P49792 3224 aaKnown RBP8.36□□□□□ -1.07
VPS53-213ENST00000572334 PLXNB2O15031 1838 aa8.36□□□□□ -1.07
VPS53-213ENST00000572334 MAST2Q6P0Q8 1798 aa8.35□□□□□ -1.07
VPS53-213ENST00000572334 PNMA6EA0A0J9YXQ4 647 aa8.35□□□□□ -1.07
VPS53-213ENST00000572334 SRGAP3O43295 1099 aa8.35□□□□□ -1.07
VPS53-213ENST00000572334 BCAR3O75815 825 aa8.35□□□□□ -1.07
VPS53-213ENST00000572334 RGS3P49796 1198 aa8.35□□□□□ -1.07
VPS53-213ENST00000572334 PI16Q6UXB8 463 aa8.35□□□□□ -1.07
VPS53-213ENST00000572334 ANKRD23Q86SG2 305 aa8.35□□□□□ -1.07
VPS53-213ENST00000572334 SH3TC2Q8TF17 1288 aa8.35□□□□□ -1.07
VPS53-213ENST00000572334 TRIM47Q96LD4 638 aa8.35□□□□□ -1.07
VPS53-213ENST00000572334 GNL3LQ9NVN8 582 aaKnown RBP8.35□□□□□ -1.07
VPS53-213ENST00000572334 FRMD4AQ9P2Q2 1039 aaPredicted RBP8.35□□□□□ -1.07
VPS53-213ENST00000572334 CPA4Q9UI42 421 aa8.35□□□□□ -1.07
VPS53-213ENST00000572334 MROH7-TTC4A0A0A0MT08 1334 aa8.34□□□□□ -1.07
VPS53-213ENST00000572334 GPR75-ASB3A0A0A6YYF3 556 aa8.34□□□□□ -1.07
VPS53-213ENST00000572334 PDHXO00330 501 aa8.34□□□□□ -1.07
VPS53-213ENST00000572334 ENTPD3O75355 529 aa8.34□□□□□ -1.07
VPS53-213ENST00000572334 BCRP11274 1271 aa8.34□□□□□ -1.07
VPS53-213ENST00000572334 PTPRAP18433 802 aa8.34□□□□□ -1.07
VPS53-213ENST00000572334 MECOMQ03112 1051 aa8.34□□□□□ -1.07
VPS53-213ENST00000572334 HMG20BQ9P0W2 317 aa8.34□□□□□ -1.07
VPS53-213ENST00000572334 AFG3L2Q9Y4W6 797 aa8.34□□□□□ -1.07
VPS53-213ENST00000572334 GTF3C3Q9Y5Q9 886 aa8.34□□□□□ -1.07
VPS53-213ENST00000572334 MYH1P12882 1939 aa8.34□□□□□ -1.07
VPS53-213ENST00000572334 A0A0G2JLL6 359 aaPredicted RBP8.33□□□□□ -1.08
VPS53-213ENST00000572334 CXCL11O14625 94 aa8.33□□□□□ -1.08
VPS53-213ENST00000572334 ECM2O94769 699 aaPredicted RBP8.33□□□□□ -1.08
VPS53-213ENST00000572334 GNAI3P08754 354 aa8.33□□□□□ -1.08
VPS53-213ENST00000572334 CYP2C8P10632 490 aa8.33□□□□□ -1.08
VPS53-213ENST00000572334 OSBPP22059 807 aa8.33□□□□□ -1.08
VPS53-213ENST00000572334 ARID4AP29374 1257 aaPredicted RBP8.33□□□□□ -1.08
VPS53-213ENST00000572334 MCAMP43121 646 aa8.33□□□□□ -1.08
VPS53-213ENST00000572334 BTDP43251 543 aa8.33□□□□□ -1.08
VPS53-213ENST00000572334 PSMC4P43686 418 aa8.33□□□□□ -1.08
VPS53-213ENST00000572334 RRP1BQ14684 758 aaKnown RBP8.33□□□□□ -1.08
VPS53-213ENST00000572334 MTFR1Q15390 333 aa8.33□□□□□ -1.08
VPS53-213ENST00000572334 SLC9C1Q4G0N8 1177 aa8.33□□□□□ -1.08
VPS53-213ENST00000572334 ATF7IPQ6VMQ6 1270 aa8.33□□□□□ -1.08
VPS53-213ENST00000572334 TBC1D9Q6ZT07 1266 aa8.33□□□□□ -1.08
VPS53-213ENST00000572334 PRRT2Q7Z6L0 340 aaPredicted RBP8.33□□□□□ -1.08
VPS53-213ENST00000572334 CCDC84Q86UT8 332 aaPredicted RBP8.33□□□□□ -1.08
VPS53-213ENST00000572334 SCYL3Q8IZE3 742 aa8.33□□□□□ -1.08
VPS53-213ENST00000572334 ZGPATQ8N5A5 531 aaKnown RBP8.33□□□□□ -1.08
VPS53-213ENST00000572334 NSUN4Q96CB9 384 aaKnown RBP8.33□□□□□ -1.08
VPS53-213ENST00000572334 SHISA4Q96DD7 197 aa8.33□□□□□ -1.08
VPS53-213ENST00000572334 ABCF2Q9UG63 623 aa8.33□□□□□ -1.08
VPS53-213ENST00000572334 SRRDQ9UH36 339 aa8.33□□□□□ -1.08
VPS53-213ENST00000572334 COL2A1P02458 1487 aaPredicted RBP8.32□□□□□ -1.08
VPS53-213ENST00000572334 FAM196BA6NMK8 535 aa8.32□□□□□ -1.08
VPS53-213ENST00000572334 NPM3O75607 178 aaKnown RBP8.32□□□□□ -1.08
VPS53-213ENST00000572334 MYCP01106 439 aaPredicted RBP8.32□□□□□ -1.08
VPS53-213ENST00000572334 GNRH1P01148 92 aa8.32□□□□□ -1.08
VPS53-213ENST00000572334 POLA2Q14181 598 aa8.32□□□□□ -1.08
VPS53-213ENST00000572334 TMEM57Q8N5G2 664 aa8.32□□□□□ -1.08
VPS53-213ENST00000572334 GABRQQ9UN88 632 aa8.32□□□□□ -1.08
VPS53-213ENST00000572334 HDAC5Q9UQL6 1122 aa8.32□□□□□ -1.08
VPS53-213ENST00000572334 AKAP2Q9Y2D5 859 aa8.32□□□□□ -1.08
VPS53-213ENST00000572334 ZHX2Q9Y6X8 837 aa8.32□□□□□ -1.08
VPS53-213ENST00000572334 TBC1D12O60347 775 aa8.31□□□□□ -1.08
VPS53-213ENST00000572334 CTNND1O60716 968 aaKnown RBP8.31□□□□□ -1.08
VPS53-213ENST00000572334 GNAI2P04899 355 aa8.31□□□□□ -1.08
VPS53-213ENST00000572334 PRMT2P55345 433 aa8.31□□□□□ -1.08
VPS53-213ENST00000572334 PICALMQ13492 652 aa8.31□□□□□ -1.08
VPS53-213ENST00000572334 MVPQ14764 893 aaKnown RBP8.31□□□□□ -1.08
VPS53-213ENST00000572334 ARHGEF6Q15052 776 aa8.31□□□□□ -1.08
VPS53-213ENST00000572334 HABP4Q5JVS0 413 aaKnown RBP8.31□□□□□ -1.08
VPS53-213ENST00000572334 UBE2Q1Q7Z7E8 422 aa8.31□□□□□ -1.08
VPS53-213ENST00000572334 ADGRA1Q86SQ6 560 aa8.31□□□□□ -1.08
VPS53-213ENST00000572334 NBPF11Q86T75 865 aa8.31□□□□□ -1.08
VPS53-213ENST00000572334 DZIP1Q86YF9 867 aaKnown RBP8.31□□□□□ -1.08
VPS53-213ENST00000572334 SPATA5Q8NB90 893 aa8.31□□□□□ -1.08
VPS53-213ENST00000572334 CLUAP1Q96AJ1 413 aa8.31□□□□□ -1.08
VPS53-213ENST00000572334 NEUROD6Q96NK8 337 aa8.31□□□□□ -1.08
VPS53-213ENST00000572334 TMEM106CQ9BVX2 250 aa8.31□□□□□ -1.08
VPS53-213ENST00000572334 PCDH10Q9P2E7 1040 aa8.31□□□□□ -1.08
VPS53-213ENST00000572334 LAMA3Q16787 3333 aa8.31□□□□□ -1.08
VPS53-213ENST00000572334 DDX60LQ5H9U9 1706 aaKnown RBP8.3□□□□□ -1.08
VPS53-213ENST00000572334 RLBP1P12271 317 aa8.3□□□□□ -1.08
VPS53-213ENST00000572334 JAG1P78504 1218 aa8.3□□□□□ -1.08
VPS53-213ENST00000572334 PRKCZQ05513 592 aa8.3□□□□□ -1.08
VPS53-213ENST00000572334 KIF22Q14807 665 aa8.3□□□□□ -1.08
VPS53-213ENST00000572334 TREML2Q5T2D2 321 aa8.3□□□□□ -1.08
VPS53-213ENST00000572334 SPTY2D1Q68D10 685 aaPredicted RBP8.3□□□□□ -1.08
VPS53-213ENST00000572334 SLF2Q8IX21 1173 aa8.3□□□□□ -1.08
VPS53-213ENST00000572334 SSH3Q8TE77 659 aa8.3□□□□□ -1.08
VPS53-213ENST00000572334 PARK7Q99497 189 aaKnown RBP8.3□□□□□ -1.08
VPS53-213ENST00000572334 DBNDD2Q9BQY9 259 aa8.3□□□□□ -1.08
VPS53-213ENST00000572334 OSBPL5Q9H0X9 879 aaPredicted RBP8.3□□□□□ -1.08
VPS53-213ENST00000572334 DNAJC18Q9H819 358 aa8.3□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms