RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 DOT1LQ8TEK3 1739 aa26.35■■□□□ 1.81
VPS53-211ENST00000571805 NID2Q14112 1375 aa26.34■■□□□ 1.81
VPS53-211ENST00000571805 PRKAB2O43741 272 aa26.34■■□□□ 1.81
VPS53-211ENST00000571805 XPO4Q9C0E2 1151 aaKnown RBP26.34■■□□□ 1.81
VPS53-211ENST00000571805 KCND1Q9NSA2 647 aa26.34■■□□□ 1.81
VPS53-211ENST00000571805 GNL2Q13823 731 aaKnown RBP26.34■■□□□ 1.81
VPS53-211ENST00000571805 RESP18Q5W5W9 173 aa26.34■■□□□ 1.81
VPS53-211ENST00000571805 NYAP1Q6ZVC0 841 aa26.34■■□□□ 1.81
VPS53-211ENST00000571805 ARID3AQ99856 593 aa26.34■■□□□ 1.81
VPS53-211ENST00000571805 UTP14AQ9BVJ6 771 aaKnown RBP26.34■■□□□ 1.81
VPS53-211ENST00000571805 WNK3Q9BYP7 1800 aa26.33■■□□□ 1.81
VPS53-211ENST00000571805 FMNL1O95466 1100 aaPredicted RBP26.33■■□□□ 1.81
VPS53-211ENST00000571805 TRIM29Q14134 588 aa26.33■■□□□ 1.81
VPS53-211ENST00000571805 SLC26A6Q9BXS9 759 aa26.33■■□□□ 1.81
VPS53-211ENST00000571805 KRT23Q9C075 422 aa26.33■■□□□ 1.81
VPS53-211ENST00000571805 BCORQ6W2J9 1755 aa26.33■■□□□ 1.81
VPS53-211ENST00000571805 IFNAR1P17181 557 aa26.33■■□□□ 1.81
VPS53-211ENST00000571805 BCAMP50895 628 aa26.33■■□□□ 1.81
VPS53-211ENST00000571805 SSRP1Q08945 709 aaKnown RBP26.33■■□□□ 1.81
VPS53-211ENST00000571805 LCORLQ8N3X6 602 aa26.33■■□□□ 1.81
VPS53-211ENST00000571805 IFNKQ9P0W0 207 aa26.33■■□□□ 1.81
VPS53-211ENST00000571805 CEP135Q66GS9 1140 aa26.32■■□□□ 1.8
VPS53-211ENST00000571805 MFSD6Q6ZSS7 791 aa26.32■■□□□ 1.8
VPS53-211ENST00000571805 CLIC6Q96NY7 704 aa26.32■■□□□ 1.8
VPS53-211ENST00000571805 CCDC87Q9NVE4 849 aa26.32■■□□□ 1.8
VPS53-211ENST00000571805 TAOK2Q9UL54 1235 aa26.32■■□□□ 1.8
VPS53-211ENST00000571805 PNPLA7Q6ZV29 1317 aa26.32■■□□□ 1.8
VPS53-211ENST00000571805 IKBKBO14920 756 aa26.32■■□□□ 1.8
VPS53-211ENST00000571805 STAG1Q8WVM7 1258 aa26.32■■□□□ 1.8
VPS53-211ENST00000571805 HSD3B7Q9H2F3 369 aa26.31■■□□□ 1.8
VPS53-211ENST00000571805 PHLPP1O60346 1717 aa26.31■■□□□ 1.8
VPS53-211ENST00000571805 GNAT2P19087 354 aa26.31■■□□□ 1.8
VPS53-211ENST00000571805 CCAR2Q8N163 923 aaKnown RBP26.31■■□□□ 1.8
VPS53-211ENST00000571805 COL16A1Q07092 1604 aaPredicted RBP26.3■■□□□ 1.8
VPS53-211ENST00000571805 CUTAO60888 179 aa26.3■■□□□ 1.8
VPS53-211ENST00000571805 CAMTA2O94983 1202 aa26.3■■□□□ 1.8
VPS53-211ENST00000571805 SMC2O95347 1197 aa26.3■■□□□ 1.8
VPS53-211ENST00000571805 GUCY1A2P33402 732 aa26.3■■□□□ 1.8
VPS53-211ENST00000571805 SYCP1Q15431 976 aa26.3■■□□□ 1.8
VPS53-211ENST00000571805 ISM2Q6H9L7 571 aa26.3■■□□□ 1.8
VPS53-211ENST00000571805 SLC4A4Q9Y6R1 1079 aa26.3■■□□□ 1.8
VPS53-211ENST00000571805 CRKLP46109 303 aaKnown RBP26.29■■□□□ 1.8
VPS53-211ENST00000571805 TPM4P67936 248 aa26.29■■□□□ 1.8
VPS53-211ENST00000571805 RTL9Q8NET4 1388 aa26.29■■□□□ 1.8
VPS53-211ENST00000571805 CCDC152Q4G0S7 254 aa26.29■■□□□ 1.8
VPS53-211ENST00000571805 PARP10Q53GL7 1025 aa26.29■■□□□ 1.8
VPS53-211ENST00000571805 CCDC112Q8NEF3 446 aa26.29■■□□□ 1.8
VPS53-211ENST00000571805 NACAP1Q9BZK3 213 aa26.29■■□□□ 1.8
VPS53-211ENST00000571805 KDM4FA0A1W2PPD8 638 aa26.28■■□□□ 1.8
VPS53-211ENST00000571805 TDO2P48775 406 aa26.28■■□□□ 1.8
VPS53-211ENST00000571805 NCBP1Q09161 790 aaKnown RBP26.28■■□□□ 1.8
VPS53-211ENST00000571805 PNOCQ13519 176 aa26.28■■□□□ 1.8
VPS53-211ENST00000571805 PTPN14Q15678 1187 aa26.28■■□□□ 1.8
VPS53-211ENST00000571805 NOSTRINQ8IVI9 506 aa26.28■■□□□ 1.8
VPS53-211ENST00000571805 WASF1Q92558 559 aa26.28■■□□□ 1.8
VPS53-211ENST00000571805 MMP1P03956 469 aa26.28■■□□□ 1.8
VPS53-211ENST00000571805 ARMCX5Q6P1M9 558 aa26.28■■□□□ 1.8
VPS53-211ENST00000571805 TMC6Q7Z403 805 aa26.28■■□□□ 1.8
VPS53-211ENST00000571805 PDCL2Q8N4E4 241 aa26.28■■□□□ 1.8
VPS53-211ENST00000571805 NTSR2O95665 410 aa26.27■■□□□ 1.8
VPS53-211ENST00000571805 LONRF3Q496Y0 759 aa26.27■■□□□ 1.8
VPS53-211ENST00000571805 ZKSCAN3Q9BRR0 538 aa26.27■■□□□ 1.8
VPS53-211ENST00000571805 BTBD18B2RXH4 712 aa26.27■■□□□ 1.8
VPS53-211ENST00000571805 IGHMBP2P38935 993 aaKnown RBP26.27■■□□□ 1.8
VPS53-211ENST00000571805 TOB1P50616 345 aaPredicted RBP26.27■■□□□ 1.8
VPS53-211ENST00000571805 RRP12Q5JTH9 1297 aaKnown RBP26.27■■□□□ 1.8
VPS53-211ENST00000571805 METTL16Q86W50 562 aaKnown RBP26.27■■□□□ 1.8
VPS53-211ENST00000571805 MTA3Q9BTC8 594 aa26.27■■□□□ 1.8
VPS53-211ENST00000571805 TRMT1Q9NXH9 659 aaKnown RBP26.27■■□□□ 1.8
VPS53-211ENST00000571805 RREB1Q92766 1687 aa26.27■■□□□ 1.8
VPS53-211ENST00000571805 LMOD1P29536 600 aaPredicted RBP26.26■■□□□ 1.79
VPS53-211ENST00000571805 ATP6V1AP38606 617 aa26.26■■□□□ 1.79
VPS53-211ENST00000571805 FANCCQ00597 558 aa26.26■■□□□ 1.79
VPS53-211ENST00000571805 WTAPQ15007 396 aa26.26■■□□□ 1.79
VPS53-211ENST00000571805 PPP4R3BQ5MIZ7 849 aa26.26■■□□□ 1.79
VPS53-211ENST00000571805 FOXP4Q8IVH2 680 aaPredicted RBP26.26■■□□□ 1.79
VPS53-211ENST00000571805 CCDC150Q8NCX0 1101 aa26.26■■□□□ 1.79
VPS53-211ENST00000571805 KCNH3Q9ULD8 1083 aa26.26■■□□□ 1.79
VPS53-211ENST00000571805 RTN1Q16799 776 aa26.26■■□□□ 1.79
VPS53-211ENST00000571805 KRBA2Q6ZNG9 492 aa26.26■■□□□ 1.79
VPS53-211ENST00000571805 STK11IPQ8N1F8 1099 aa26.26■■□□□ 1.79
VPS53-211ENST00000571805 ZNF592Q92610 1267 aa26.26■■□□□ 1.79
VPS53-211ENST00000571805 BCL9LQ86UU0 1499 aa26.26■■□□□ 1.79
VPS53-211ENST00000571805 LAMB2P55268 1798 aa26.25■■□□□ 1.79
VPS53-211ENST00000571805 ATP1A3P13637 1013 aa26.25■■□□□ 1.79
VPS53-211ENST00000571805 CHRNDQ07001 517 aa26.25■■□□□ 1.79
VPS53-211ENST00000571805 KRI1Q8N9T8 703 aaKnown RBP26.25■■□□□ 1.79
VPS53-211ENST00000571805 MIGA1Q8NAN2 632 aa26.25■■□□□ 1.79
VPS53-211ENST00000571805 MYH14Q7Z406 1995 aaKnown RBP26.25■■□□□ 1.79
VPS53-211ENST00000571805 SART3Q15020 963 aaKnown RBP26.25■■□□□ 1.79
VPS53-211ENST00000571805 DIS3L2Q8IYB7 885 aaKnown RBP26.25■■□□□ 1.79
VPS53-211ENST00000571805 CRACR2BQ8N4Y2 399 aaPredicted RBP26.25■■□□□ 1.79
VPS53-211ENST00000571805 LRP2BPQ9P2M1 347 aa26.25■■□□□ 1.79
VPS53-211ENST00000571805 KCNJ14Q9UNX9 436 aa26.25■■□□□ 1.79
VPS53-211ENST00000571805 TOMM22Q9NS69 142 aa26.24■■□□□ 1.79
VPS53-211ENST00000571805 COL4A1P02462 1669 aa26.24■■□□□ 1.79
VPS53-211ENST00000571805 MDM2Q00987 491 aaPredicted RBP26.24■■□□□ 1.79
VPS53-211ENST00000571805 ITPK1Q13572 414 aa26.24■■□□□ 1.79
VPS53-211ENST00000571805 ELOA2Q8IYF1 753 aaPredicted RBP26.24■■□□□ 1.79
VPS53-211ENST00000571805 TRIM22Q8IYM9 498 aa26.24■■□□□ 1.79
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms