RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 SLC35F6Q8N357 371 aa12.94□□□□□ -0.34
LDLR-208ENST00000558518 NKX2-3Q8TAU0 364 aa12.94□□□□□ -0.34
LDLR-208ENST00000558518 CAGE1Q8TC20 777 aa12.94□□□□□ -0.34
LDLR-208ENST00000558518 IPO4Q8TEX9 1081 aaKnown RBP12.94□□□□□ -0.34
LDLR-208ENST00000558518 FAM89AQ96GI7 184 aa12.94□□□□□ -0.34
LDLR-208ENST00000558518 DSCC1Q9BVC3 393 aa12.94□□□□□ -0.34
LDLR-208ENST00000558518 ZBTB43O43298 467 aa12.93□□□□□ -0.34
LDLR-208ENST00000558518 RBL2Q08999 1139 aa12.93□□□□□ -0.34
LDLR-208ENST00000558518 PCMTD1Q96MG8 357 aaPredicted RBP12.93□□□□□ -0.34
LDLR-208ENST00000558518 PNKPQ96T60 521 aa12.93□□□□□ -0.34
LDLR-208ENST00000558518 INTS13Q9NVM9 706 aa12.93□□□□□ -0.34
LDLR-208ENST00000558518 IQSEC3Q9UPP2 1182 aaPredicted RBP12.93□□□□□ -0.34
LDLR-208ENST00000558518 XRN1Q8IZH2 1706 aaKnown RBP12.93□□□□□ -0.34
LDLR-208ENST00000558518 TXLNAP40222 546 aa12.93□□□□□ -0.34
LDLR-208ENST00000558518 SYNE4Q8N205 404 aa12.93□□□□□ -0.34
LDLR-208ENST00000558518 FUT8Q9BYC5 575 aa12.93□□□□□ -0.34
LDLR-208ENST00000558518 BLZF1Q9H2G9 400 aa12.93□□□□□ -0.34
LDLR-208ENST00000558518 CABP5Q9NP86 173 aa12.93□□□□□ -0.34
LDLR-208ENST00000558518 BAZ2BQ9UIF8 2168 aaKnown RBP12.93□□□□□ -0.34
LDLR-208ENST00000558518 AKR1B15C9JRZ8 316 aaPredicted RBP12.93□□□□□ -0.34
LDLR-208ENST00000558518 ERLIN1O75477 346 aa12.93□□□□□ -0.34
LDLR-208ENST00000558518 ERCC3P19447 782 aa12.93□□□□□ -0.34
LDLR-208ENST00000558518 CASP14P31944 242 aa12.93□□□□□ -0.34
LDLR-208ENST00000558518 POSTNQ15063 836 aa12.93□□□□□ -0.34
LDLR-208ENST00000558518 PSMB7Q99436 277 aa12.93□□□□□ -0.34
LDLR-208ENST00000558518 ALDH8A1Q9H2A2 487 aaPredicted RBP12.93□□□□□ -0.34
LDLR-208ENST00000558518 HSD3B7Q9H2F3 369 aa12.93□□□□□ -0.34
LDLR-208ENST00000558518 MRFAP1Q9Y605 127 aa12.93□□□□□ -0.34
LDLR-208ENST00000558518 SNAP23O00161 211 aa12.92□□□□□ -0.34
LDLR-208ENST00000558518 GTF2A1P52655 376 aaPredicted RBP12.92□□□□□ -0.34
LDLR-208ENST00000558518 ATL3Q6DD88 541 aa12.92□□□□□ -0.34
LDLR-208ENST00000558518 TC2NQ8N9U0 490 aa12.92□□□□□ -0.34
LDLR-208ENST00000558518 XAGE2Q96GT9 111 aa12.92□□□□□ -0.34
LDLR-208ENST00000558518 MAN1B1Q9UKM7 699 aa12.92□□□□□ -0.34
LDLR-208ENST00000558518 HPS5Q9UPZ3 1129 aa12.92□□□□□ -0.34
LDLR-208ENST00000558518 SLC12A7Q9Y666 1083 aa12.92□□□□□ -0.34
LDLR-208ENST00000558518 NEO1Q92859 1461 aa12.92□□□□□ -0.34
LDLR-208ENST00000558518 EIF3JO75822 258 aaKnown RBP12.92□□□□□ -0.34
LDLR-208ENST00000558518 BMP6P22004 513 aa12.92□□□□□ -0.34
LDLR-208ENST00000558518 GUCY1A2P33402 732 aa12.92□□□□□ -0.34
LDLR-208ENST00000558518 RFX5P48382 616 aaPredicted RBP12.92□□□□□ -0.34
LDLR-208ENST00000558518 SART3Q15020 963 aaKnown RBP12.92□□□□□ -0.34
LDLR-208ENST00000558518 METTL24Q5JXM2 366 aa12.92□□□□□ -0.34
LDLR-208ENST00000558518 PXDNLA1KZ92 1463 aa12.92□□□□□ -0.34
LDLR-208ENST00000558518 N4BP3O15049 544 aa12.92□□□□□ -0.34
LDLR-208ENST00000558518 SRGAP2O75044 1071 aa12.92□□□□□ -0.34
LDLR-208ENST00000558518 SNRPA1P09661 255 aaKnown RBP12.92□□□□□ -0.34
LDLR-208ENST00000558518 ANTXR2P58335 489 aa12.92□□□□□ -0.34
LDLR-208ENST00000558518 CYB5R4Q7L1T6 521 aa12.92□□□□□ -0.34
LDLR-208ENST00000558518 DIS3L2Q8IYB7 885 aaKnown RBP12.92□□□□□ -0.34
LDLR-208ENST00000558518 KRI1Q8N9T8 703 aaKnown RBP12.92□□□□□ -0.34
LDLR-208ENST00000558518 PLIN2Q99541 437 aa12.92□□□□□ -0.34
LDLR-208ENST00000558518 CNNM1Q9NRU3 951 aa12.92□□□□□ -0.34
LDLR-208ENST00000558518 TRIM10Q9UDY6 481 aa12.92□□□□□ -0.34
LDLR-208ENST00000558518 CEMIPQ8WUJ3 1361 aa12.91□□□□□ -0.34
LDLR-208ENST00000558518 CTAGE15A4D2H0 777 aa12.91□□□□□ -0.34
LDLR-208ENST00000558518 CTAGE9A4FU28 777 aa12.91□□□□□ -0.34
LDLR-208ENST00000558518 CTAGE8P0CG41 777 aa12.91□□□□□ -0.34
LDLR-208ENST00000558518 TATP17735 454 aaPredicted RBP12.91□□□□□ -0.34
LDLR-208ENST00000558518 VSNL1P62760 191 aa12.91□□□□□ -0.34
LDLR-208ENST00000558518 MAP3K9P80192 1104 aa12.91□□□□□ -0.34
LDLR-208ENST00000558518 CTAGE6Q86UF2 777 aa12.91□□□□□ -0.34
LDLR-208ENST00000558518 CTAGE4Q8IX94 777 aa12.91□□□□□ -0.34
LDLR-208ENST00000558518 IKBKBO14920 756 aa12.91□□□□□ -0.34
LDLR-208ENST00000558518 SSRP1Q08945 709 aaKnown RBP12.91□□□□□ -0.34
LDLR-208ENST00000558518 RAD9BQ6WBX8 426 aa12.91□□□□□ -0.34
LDLR-208ENST00000558518 CWC25Q9NXE8 425 aaPredicted RBP12.91□□□□□ -0.34
LDLR-208ENST00000558518 MINDY4BA8MYZ0 360 aa12.9□□□□□ -0.34
LDLR-208ENST00000558518 HDXQ7Z353 690 aa12.9□□□□□ -0.34
LDLR-208ENST00000558518 MICALL1Q8N3F8 863 aa12.9□□□□□ -0.34
LDLR-208ENST00000558518 RABGGTAQ92696 567 aa12.9□□□□□ -0.34
LDLR-208ENST00000558518 SIRT1Q96EB6 747 aa12.9□□□□□ -0.34
LDLR-208ENST00000558518 C19orf44Q9H6X5 657 aa12.9□□□□□ -0.34
LDLR-208ENST00000558518 HDAC6Q9UBN7 1215 aa12.9□□□□□ -0.34
LDLR-208ENST00000558518 ANGEL1Q9UNK9 670 aaKnown RBP12.9□□□□□ -0.34
LDLR-208ENST00000558518 PCDHB6Q9Y5E3 794 aa12.9□□□□□ -0.34
LDLR-208ENST00000558518 C3P01024 1663 aa12.9□□□□□ -0.34
LDLR-208ENST00000558518 EYA2O00167 538 aa12.9□□□□□ -0.34
LDLR-208ENST00000558518 PRDM1O75626 825 aa12.9□□□□□ -0.34
LDLR-208ENST00000558518 ACTN2P35609 894 aa12.9□□□□□ -0.34
LDLR-208ENST00000558518 FILIP1LQ4L180 1135 aa12.9□□□□□ -0.34
LDLR-208ENST00000558518 AIDAQ96BJ3 306 aa12.9□□□□□ -0.34
LDLR-208ENST00000558518 FAM204AQ9H8W3 233 aa12.9□□□□□ -0.34
LDLR-208ENST00000558518 TAB2Q9NYJ8 693 aa12.9□□□□□ -0.34
LDLR-208ENST00000558518 FAM205CA6NFA0 338 aa12.9□□□□□ -0.34
LDLR-208ENST00000558518 DHX8Q14562 1220 aaKnown RBP12.9□□□□□ -0.34
LDLR-208ENST00000558518 NOM1Q5C9Z4 860 aaKnown RBP12.9□□□□□ -0.34
LDLR-208ENST00000558518 EPSTI1Q96J88 318 aa12.9□□□□□ -0.34
LDLR-208ENST00000558518 PTPRUQ92729 1446 aa12.9□□□□□ -0.34
LDLR-208ENST00000558518 SH3TC1Q8TE82 1336 aa12.9□□□□□ -0.35
LDLR-208ENST00000558518 IL15P40933 162 aaPredicted RBP12.89□□□□□ -0.35
LDLR-208ENST00000558518 ATG9AQ7Z3C6 839 aa12.89□□□□□ -0.35
LDLR-208ENST00000558518 SRGAP1Q7Z6B7 1085 aa12.89□□□□□ -0.35
LDLR-208ENST00000558518 TBC1D10CQ8IV04 446 aa12.89□□□□□ -0.35
LDLR-208ENST00000558518 NOA1Q8NC60 698 aaKnown RBP12.89□□□□□ -0.35
LDLR-208ENST00000558518 SLC52A2Q9HAB3 445 aa12.89□□□□□ -0.35
LDLR-208ENST00000558518 FAM53CQ9NYF3 392 aa12.89□□□□□ -0.35
LDLR-208ENST00000558518 CTNND2Q9UQB3 1225 aa12.89□□□□□ -0.35
LDLR-208ENST00000558518 PXDNQ92626 1479 aa12.89□□□□□ -0.35
LDLR-208ENST00000558518 IRX3P78415 501 aaPredicted RBP12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms