RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 ALDH8A1Q9H2A2 487 aaPredicted RBP6.09□□□□□ -1.44
USP28-213ENST00000544967 CLSTN2Q9H4D0 955 aa6.09□□□□□ -1.44
USP28-213ENST00000544967 CWC25Q9NXE8 425 aaPredicted RBP6.09□□□□□ -1.44
USP28-213ENST00000544967 DONSONQ9NYP3 566 aa6.09□□□□□ -1.44
USP28-213ENST00000544967 PARP3Q9Y6F1 533 aa6.09□□□□□ -1.44
USP28-213ENST00000544967 PI4KAP2A4QPH2 592 aa6.08□□□□□ -1.44
USP28-213ENST00000544967 TUBBP07437 444 aa6.08□□□□□ -1.44
USP28-213ENST00000544967 CCDC172P0C7W6 258 aa6.08□□□□□ -1.44
USP28-213ENST00000544967 ACTN2P35609 894 aa6.08□□□□□ -1.44
USP28-213ENST00000544967 CLCN6P51797 869 aa6.08□□□□□ -1.44
USP28-213ENST00000544967 ELF2Q15723 593 aa6.08□□□□□ -1.44
USP28-213ENST00000544967 CEP85Q6P2H3 762 aa6.08□□□□□ -1.44
USP28-213ENST00000544967 PI4KAP1Q8N8J0 262 aa6.08□□□□□ -1.44
USP28-213ENST00000544967 SCAND2PQ9GZW5 306 aaPredicted RBP6.08□□□□□ -1.44
USP28-213ENST00000544967 A1CFQ9NQ94 594 aaKnown RBP6.08□□□□□ -1.44
USP28-213ENST00000544967 CEP83Q9Y592 693 aa6.08□□□□□ -1.44
USP28-213ENST00000544967 SH3TC1Q8TE82 1336 aa6.08□□□□□ -1.44
USP28-213ENST00000544967 NRDCO43847 1150 aa6.08□□□□□ -1.44
USP28-213ENST00000544967 PARNO95453 639 aaKnown RBP6.08□□□□□ -1.44
USP28-213ENST00000544967 NPR1P16066 1061 aa6.08□□□□□ -1.44
USP28-213ENST00000544967 CCZ1BP86790 482 aa6.08□□□□□ -1.44
USP28-213ENST00000544967 CCZ1P86791 482 aaPredicted RBP6.08□□□□□ -1.44
USP28-213ENST00000544967 TTC31Q49AM3 519 aaPredicted RBP6.08□□□□□ -1.44
USP28-213ENST00000544967 CACTINQ8WUQ7 758 aaKnown RBP6.08□□□□□ -1.44
USP28-213ENST00000544967 HNRNPLLQ8WVV9 542 aaKnown RBP6.08□□□□□ -1.44
USP28-213ENST00000544967 CBX8Q9HC52 389 aa6.08□□□□□ -1.44
USP28-213ENST00000544967 DNAI1Q9UI46 699 aa6.08□□□□□ -1.44
USP28-213ENST00000544967 TBC1D2BQ9UPU7 963 aa6.08□□□□□ -1.44
USP28-213ENST00000544967 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP6.08□□□□□ -1.44
USP28-213ENST00000544967 CCDC196A0A1B0GTZ2 297 aa6.08□□□□□ -1.44
USP28-213ENST00000544967 MYO1BO43795 1136 aa6.08□□□□□ -1.44
USP28-213ENST00000544967 CREB3O43889 395 aa6.08□□□□□ -1.44
USP28-213ENST00000544967 APPP05067 770 aa6.08□□□□□ -1.44
USP28-213ENST00000544967 ERCC3P19447 782 aa6.08□□□□□ -1.44
USP28-213ENST00000544967 PDCP20941 246 aa6.08□□□□□ -1.44
USP28-213ENST00000544967 RFX5P48382 616 aaPredicted RBP6.08□□□□□ -1.44
USP28-213ENST00000544967 PDE1AP54750 535 aa6.08□□□□□ -1.44
USP28-213ENST00000544967 MCCD1P59942 119 aaPredicted RBP6.08□□□□□ -1.44
USP28-213ENST00000544967 TPTE2Q6XPS3 522 aa6.08□□□□□ -1.44
USP28-213ENST00000544967 SYT10Q6XYQ8 523 aa6.08□□□□□ -1.44
USP28-213ENST00000544967 EGFL6Q8IUX8 553 aa6.08□□□□□ -1.44
USP28-213ENST00000544967 CNBD1Q8NA66 436 aa6.08□□□□□ -1.44
USP28-213ENST00000544967 PMM1Q92871 262 aa6.08□□□□□ -1.44
USP28-213ENST00000544967 CCDC97Q96F63 343 aaPredicted RBP6.08□□□□□ -1.44
USP28-213ENST00000544967 SYT17Q9BSW7 474 aa6.08□□□□□ -1.44
USP28-213ENST00000544967 ORC3Q9UBD5 711 aaPredicted RBP6.08□□□□□ -1.44
USP28-213ENST00000544967 CLIP2Q9UDT6 1046 aa6.08□□□□□ -1.44
USP28-213ENST00000544967 LIMCH1Q9UPQ0 1083 aa6.08□□□□□ -1.44
USP28-213ENST00000544967 CNPY2Q9Y2B0 182 aa6.08□□□□□ -1.44
USP28-213ENST00000544967 RRP15Q9Y3B9 282 aaKnown RBP6.08□□□□□ -1.44
USP28-213ENST00000544967 JRKLQ9Y4A0 524 aa6.08□□□□□ -1.44
USP28-213ENST00000544967 MYH15Q9Y2K3 1946 aa6.07□□□□□ -1.44
USP28-213ENST00000544967 ATXN2Q99700 1313 aaKnown RBP6.07□□□□□ -1.44
USP28-213ENST00000544967 POTEB2H3BUK9 544 aa6.07□□□□□ -1.44
USP28-213ENST00000544967 SGSM2O43147 1006 aa6.07□□□□□ -1.44
USP28-213ENST00000544967 ZBTB7AO95365 584 aa6.07□□□□□ -1.44
USP28-213ENST00000544967 MYL6BP14649 208 aa6.07□□□□□ -1.44
USP28-213ENST00000544967 KRT85P78386 507 aa6.07□□□□□ -1.44
USP28-213ENST00000544967 ST5P78524 1137 aa6.07□□□□□ -1.44
USP28-213ENST00000544967 TUBB2AQ13885 445 aa6.07□□□□□ -1.44
USP28-213ENST00000544967 POLA2Q14181 598 aa6.07□□□□□ -1.44
USP28-213ENST00000544967 NBPF20Q3BBV1 942 aa6.07□□□□□ -1.44
USP28-213ENST00000544967 SMIM5Q71RC9 77 aa6.07□□□□□ -1.44
USP28-213ENST00000544967 GPR161Q8N6U8 529 aaKnown RBP6.07□□□□□ -1.44
USP28-213ENST00000544967 MRRFQ96E11 262 aaKnown RBP6.07□□□□□ -1.44
USP28-213ENST00000544967 MASTLQ96GX5 879 aa6.07□□□□□ -1.44
USP28-213ENST00000544967 BPIFA3Q9BQP9 254 aa6.07□□□□□ -1.44
USP28-213ENST00000544967 TUBB2BQ9BVA1 445 aa6.07□□□□□ -1.44
USP28-213ENST00000544967 USP44Q9H0E7 712 aa6.07□□□□□ -1.44
USP28-213ENST00000544967 NIP7Q9Y221 180 aaKnown RBP eCLIP6.07□□□□□ -1.44
USP28-213ENST00000544967 LRRFIP2Q9Y608 721 aaKnown RBP6.07□□□□□ -1.44
USP28-213ENST00000544967 GOLGA6L9A6NEM1 432 aa6.07□□□□□ -1.44
USP28-213ENST00000544967 ERICH4A6NGS2 130 aa6.07□□□□□ -1.44
USP28-213ENST00000544967 PDE8AO60658 829 aa6.07□□□□□ -1.44
USP28-213ENST00000544967 SYT1P21579 422 aa6.07□□□□□ -1.44
USP28-213ENST00000544967 USP8P40818 1118 aa6.07□□□□□ -1.44
USP28-213ENST00000544967 ERFEQ4G0M1 354 aa6.07□□□□□ -1.44
USP28-213ENST00000544967 EFCAB13Q8IY85 973 aa6.07□□□□□ -1.44
USP28-213ENST00000544967 MORC4Q8TE76 937 aa6.07□□□□□ -1.44
USP28-213ENST00000544967 STAG1Q8WVM7 1258 aa6.07□□□□□ -1.44
USP28-213ENST00000544967 SREK1Q8WXA9 508 aaKnown RBP6.07□□□□□ -1.44
USP28-213ENST00000544967 POM121Q96HA1 1249 aa6.07□□□□□ -1.44
USP28-213ENST00000544967 DEF6Q9H4E7 631 aa6.07□□□□□ -1.44
USP28-213ENST00000544967 GRM8O00222 908 aa6.06□□□□□ -1.44
USP28-213ENST00000544967 EIF2S2P20042 333 aaKnown RBP6.06□□□□□ -1.44
USP28-213ENST00000544967 CHMLP26374 656 aa6.06□□□□□ -1.44
USP28-213ENST00000544967 CTSWP56202 376 aa6.06□□□□□ -1.44
USP28-213ENST00000544967 BRD3Q15059 726 aa6.06□□□□□ -1.44
USP28-213ENST00000544967 SOGA3Q5TF21 947 aa6.06□□□□□ -1.44
USP28-213ENST00000544967 ATL3Q6DD88 541 aa6.06□□□□□ -1.44
USP28-213ENST00000544967 MCTP2Q6DN12 878 aa6.06□□□□□ -1.44
USP28-213ENST00000544967 C3orf67Q6ZVT6 689 aa6.06□□□□□ -1.44
USP28-213ENST00000544967 GET4Q7L5D6 327 aaPredicted RBP6.06□□□□□ -1.44
USP28-213ENST00000544967 TRIM5Q9C035 493 aa6.06□□□□□ -1.44
USP28-213ENST00000544967 FHDC1Q9C0D6 1143 aaPredicted RBP6.06□□□□□ -1.44
USP28-213ENST00000544967 MTMR6Q9Y217 621 aa6.06□□□□□ -1.44
USP28-213ENST00000544967 KIF3CO14782 793 aa6.06□□□□□ -1.44
USP28-213ENST00000544967 CIAO1O76071 339 aa6.06□□□□□ -1.44
USP28-213ENST00000544967 ANXA1P04083 346 aa6.06□□□□□ -1.44
USP28-213ENST00000544967 PIP4K2AP48426 406 aaPredicted RBP6.06□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms