RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 ANO6Q4KMQ2 910 aa11.45□□□□□ -0.58
SS18-205ENST00000542420 ANO1Q5XXA6 986 aa11.45□□□□□ -0.58
SS18-205ENST00000542420 NUTM2AQ8IVF1 878 aaPredicted RBP11.45□□□□□ -0.58
SS18-205ENST00000542420 PIBF1Q8WXW3 757 aa11.45□□□□□ -0.58
SS18-205ENST00000542420 NLRP3Q96P20 1036 aa11.45□□□□□ -0.58
SS18-205ENST00000542420 NAT10Q9H0A0 1025 aaKnown RBP11.45□□□□□ -0.58
SS18-205ENST00000542420 ARMT1Q9H993 441 aa11.45□□□□□ -0.58
SS18-205ENST00000542420 BCL2L12Q9HB09 334 aa11.45□□□□□ -0.58
SS18-205ENST00000542420 CBX8Q9HC52 389 aa11.45□□□□□ -0.58
SS18-205ENST00000542420 EIF4ENIF1Q9NRA8 985 aaKnown RBP11.45□□□□□ -0.58
SS18-205ENST00000542420 COL1A1P02452 1464 aaPredicted RBP11.45□□□□□ -0.58
SS18-205ENST00000542420 IFIT3O14879 490 aaKnown RBP11.44□□□□□ -0.58
SS18-205ENST00000542420 ME1P48163 572 aa11.44□□□□□ -0.58
SS18-205ENST00000542420 SSRP1Q08945 709 aaKnown RBP11.44□□□□□ -0.58
SS18-205ENST00000542420 CERS3Q8IU89 383 aa11.44□□□□□ -0.58
SS18-205ENST00000542420 LCORLQ8N3X6 602 aa11.44□□□□□ -0.58
SS18-205ENST00000542420 FSIP1Q8NA03 581 aa11.44□□□□□ -0.58
SS18-205ENST00000542420 ESR2Q92731 530 aa11.44□□□□□ -0.58
SS18-205ENST00000542420 GPHNQ9NQX3 736 aaPredicted RBP11.44□□□□□ -0.58
SS18-205ENST00000542420 ZSWIM5Q9P217 1185 aa11.44□□□□□ -0.58
SS18-205ENST00000542420 PCDHA7Q9UN72 937 aa11.44□□□□□ -0.58
SS18-205ENST00000542420 TNRC6CQ9HCJ0 1690 aaKnown RBP11.44□□□□□ -0.58
SS18-205ENST00000542420 KCNQ2O43526 872 aa11.44□□□□□ -0.58
SS18-205ENST00000542420 CALM1P0DP23 149 aa11.44□□□□□ -0.58
SS18-205ENST00000542420 CALM2P0DP24 149 aa11.44□□□□□ -0.58
SS18-205ENST00000542420 CALM3P0DP25 149 aa11.44□□□□□ -0.58
SS18-205ENST00000542420 CYP7A1P22680 504 aa11.44□□□□□ -0.58
SS18-205ENST00000542420 PPARAQ07869 468 aa11.44□□□□□ -0.58
SS18-205ENST00000542420 WTAPQ15007 396 aa11.44□□□□□ -0.58
SS18-205ENST00000542420 FAM98CQ17RN3 349 aaKnown RBP11.44□□□□□ -0.58
SS18-205ENST00000542420 TPTE2Q6XPS3 522 aa11.44□□□□□ -0.58
SS18-205ENST00000542420 C15orf52Q6ZUT6 534 aaKnown RBP11.44□□□□□ -0.58
SS18-205ENST00000542420 PLA2G4DQ86XP0 818 aa11.44□□□□□ -0.58
SS18-205ENST00000542420 TRIM22Q8IYM9 498 aa11.44□□□□□ -0.58
SS18-205ENST00000542420 SETDB2Q96T68 719 aa11.44□□□□□ -0.58
SS18-205ENST00000542420 RIOK1Q9BRS2 568 aaKnown RBP11.44□□□□□ -0.58
SS18-205ENST00000542420 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP11.44□□□□□ -0.584e-6■■■□□ 17.6
SS18-205ENST00000542420 LRRC37AA6NMS7 1700 aa11.44□□□□□ -0.58
SS18-205ENST00000542420 DEXIO95424 95 aa11.43□□□□□ -0.58
SS18-205ENST00000542420 ZNF165P49910 485 aa11.43□□□□□ -0.58
SS18-205ENST00000542420 RPS8P62241 208 aaKnown RBP11.43□□□□□ -0.58
SS18-205ENST00000542420 RBM6P78332 1123 aaKnown RBP11.43□□□□□ -0.58
SS18-205ENST00000542420 SF3A1Q15459 793 aaKnown RBP11.43□□□□□ -0.58
SS18-205ENST00000542420 KRT40Q6A162 431 aa11.43□□□□□ -0.58
SS18-205ENST00000542420 NFXL1Q6ZNB6 911 aa11.43□□□□□ -0.58
SS18-205ENST00000542420 FAM217BQ9NTX9 383 aaPredicted RBP11.43□□□□□ -0.58
SS18-205ENST00000542420 SPTLC3Q9NUV7 552 aa11.43□□□□□ -0.58
SS18-205ENST00000542420 NAV1Q8NEY1 1877 aa11.43□□□□□ -0.58
SS18-205ENST00000542420 MYO1BO43795 1136 aa11.43□□□□□ -0.58
SS18-205ENST00000542420 ZPR1O75312 459 aa11.43□□□□□ -0.58
SS18-205ENST00000542420 IQCB1Q15051 598 aa11.43□□□□□ -0.58
SS18-205ENST00000542420 SPTY2D1Q68D10 685 aaPredicted RBP11.43□□□□□ -0.58
SS18-205ENST00000542420 NGLY1Q96IV0 654 aa11.43□□□□□ -0.58
SS18-205ENST00000542420 FAM84BQ96KN1 310 aaPredicted RBP11.43□□□□□ -0.58
SS18-205ENST00000542420 RNF26Q9BY78 433 aaPredicted RBP11.43□□□□□ -0.58
SS18-205ENST00000542420 FOXP1Q9H334 677 aaPredicted RBP11.43□□□□□ -0.58
SS18-205ENST00000542420 GOLPH3LQ9H4A5 285 aa11.43□□□□□ -0.58
SS18-205ENST00000542420 RBM28Q9NW13 759 aaKnown RBP11.43□□□□□ -0.58
SS18-205ENST00000542420 RTCBQ9Y3I0 505 aaKnown RBP11.43□□□□□ -0.58
SS18-205ENST00000542420 ORC4O43929 436 aa11.42□□□□□ -0.58
SS18-205ENST00000542420 NEMFO60524 1076 aa11.42□□□□□ -0.58
SS18-205ENST00000542420 GTF2E1P29083 439 aaPredicted RBP11.42□□□□□ -0.58
SS18-205ENST00000542420 CDC27P30260 824 aa11.42□□□□□ -0.58
SS18-205ENST00000542420 SAFBQ15424 915 aaKnown RBP eCLIP11.42□□□□□ -0.58
SS18-205ENST00000542420 CAMK4Q16566 473 aa11.42□□□□□ -0.58
SS18-205ENST00000542420 RTN1Q16799 776 aa11.42□□□□□ -0.58
SS18-205ENST00000542420 SBK1Q52WX2 424 aa11.42□□□□□ -0.58
SS18-205ENST00000542420 TBC1D9BQ66K14 1250 aa11.42□□□□□ -0.58
SS18-205ENST00000542420 VPS37DQ86XT2 251 aa11.42□□□□□ -0.58
SS18-205ENST00000542420 CEP57L1Q8IYX8 460 aa11.42□□□□□ -0.58
SS18-205ENST00000542420 MRFAP1L1Q96HT8 127 aa11.42□□□□□ -0.58
SS18-205ENST00000542420 ATP8A2Q9NTI2 1148 aa11.42□□□□□ -0.58
SS18-205ENST00000542420 IRS2Q9Y4H2 1338 aa11.42□□□□□ -0.58
SS18-205ENST00000542420 ONECUT3O60422 494 aaPredicted RBP11.42□□□□□ -0.58
SS18-205ENST00000542420 CUTAO60888 179 aa11.42□□□□□ -0.58
SS18-205ENST00000542420 SEC23AQ15436 765 aa11.42□□□□□ -0.58
SS18-205ENST00000542420 CKAP2LQ8IYA6 745 aa11.42□□□□□ -0.58
SS18-205ENST00000542420 FAM177A1Q8N128 213 aaPredicted RBP11.42□□□□□ -0.58
SS18-205ENST00000542420 MAP7D2Q96T17 732 aa11.42□□□□□ -0.58
SS18-205ENST00000542420 LEMD3Q9Y2U8 911 aa11.42□□□□□ -0.58
SS18-205ENST00000542420 GOLGA6L19H0YKK7 550 aa11.41□□□□□ -0.58
SS18-205ENST00000542420 DDAH1O94760 285 aa11.41□□□□□ -0.58
SS18-205ENST00000542420 SLC3A2P08195 630 aaKnown RBP11.41□□□□□ -0.58
SS18-205ENST00000542420 ZNF75DP51815 510 aa11.41□□□□□ -0.58
SS18-205ENST00000542420 CCDC178Q5BJE1 867 aa11.41□□□□□ -0.58
SS18-205ENST00000542420 RILPL1Q5EBL4 403 aa11.41□□□□□ -0.58
SS18-205ENST00000542420 AXDND1Q5T1B0 1012 aaPredicted RBP11.41□□□□□ -0.58
SS18-205ENST00000542420 RAI14Q9P0K7 980 aa11.41□□□□□ -0.58
SS18-205ENST00000542420 HPSEQ9Y251 543 aa11.41□□□□□ -0.58
SS18-205ENST00000542420 CDK5RAP2Q96SN8 1893 aa11.41□□□□□ -0.58
SS18-205ENST00000542420 FOCADQ5VW36 1801 aa11.41□□□□□ -0.58
SS18-205ENST00000542420 FAM177BA6PVY3 158 aa11.41□□□□□ -0.58
SS18-205ENST00000542420 KIF28PB7ZC32 967 aa11.41□□□□□ -0.58
SS18-205ENST00000542420 DTNBO60941 627 aa11.41□□□□□ -0.58
SS18-205ENST00000542420 MMP1P03956 469 aa11.41□□□□□ -0.58
SS18-205ENST00000542420 XBP1P17861 261 aa11.41□□□□□ -0.58
SS18-205ENST00000542420 GUCY1B3Q02153 619 aa11.41□□□□□ -0.58
SS18-205ENST00000542420 CTDSPL2Q05D32 466 aa11.41□□□□□ -0.58
SS18-205ENST00000542420 PTPAQ15257 358 aa11.41□□□□□ -0.58
SS18-205ENST00000542420 MICU3Q86XE3 530 aa11.41□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 96.3 ms