RNA–Protein interactions for RNA: ENST00000540725.5

SNHG1-213, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 1 (best) BASIC

Gene SNHG1, Length 1,374 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-213ENST00000540725 EN2P19622 333 aaPredicted RBP17.46■□□□□ 0.39
SNHG1-213ENST00000540725 BTDP43251 543 aa17.46■□□□□ 0.39
SNHG1-213ENST00000540725 MOGSQ13724 837 aa17.46■□□□□ 0.39
SNHG1-213ENST00000540725 C17orf99Q6UX52 265 aa17.46■□□□□ 0.39
SNHG1-213ENST00000540725 ERICH6Q7L0X2 663 aa17.46■□□□□ 0.39
SNHG1-213ENST00000540725 SH3BP5LQ7L8J4 393 aa17.46■□□□□ 0.39
SNHG1-213ENST00000540725 NBPF11Q86T75 865 aa17.46■□□□□ 0.39
SNHG1-213ENST00000540725 ZSCAN29Q8IWY8 852 aaPredicted RBP17.46■□□□□ 0.39
SNHG1-213ENST00000540725 CLUAP1Q96AJ1 413 aa17.46■□□□□ 0.39
SNHG1-213ENST00000540725 CPA4Q9UI42 421 aa17.46■□□□□ 0.39
SNHG1-213ENST00000540725 ADGRA2Q96PE1 1338 aa17.45■□□□□ 0.38
SNHG1-213ENST00000540725 PNMA6EA0A0J9YXQ4 647 aa17.45■□□□□ 0.38
SNHG1-213ENST00000540725 GNRH1P01148 92 aa17.45■□□□□ 0.38
SNHG1-213ENST00000540725 MECOMQ03112 1051 aa17.45■□□□□ 0.38
SNHG1-213ENST00000540725 SCYL3Q8IZE3 742 aa17.45■□□□□ 0.38
SNHG1-213ENST00000540725 DDX4Q9NQI0 724 aaKnown RBP17.45■□□□□ 0.38
SNHG1-213ENST00000540725 HMG20BQ9P0W2 317 aa17.45■□□□□ 0.38
SNHG1-213ENST00000540725 DDTLA6NHG4 134 aaPredicted RBP17.44■□□□□ 0.38
SNHG1-213ENST00000540725 CXCL11O14625 94 aa17.44■□□□□ 0.38
SNHG1-213ENST00000540725 ECM2O94769 699 aaPredicted RBP17.44■□□□□ 0.38
SNHG1-213ENST00000540725 PICALMQ13492 652 aa17.44■□□□□ 0.38
SNHG1-213ENST00000540725 GORABQ5T7V8 394 aa17.44■□□□□ 0.38
SNHG1-213ENST00000540725 PI16Q6UXB8 463 aa17.44■□□□□ 0.38
SNHG1-213ENST00000540725 ZNF384Q8TF68 577 aa17.44■□□□□ 0.38
SNHG1-213ENST00000540725 PICK1Q9NRD5 415 aa17.44■□□□□ 0.38
SNHG1-213ENST00000540725 ATAD5Q96QE3 1844 aa17.44■□□□□ 0.38
SNHG1-213ENST00000540725 MYO5AQ9Y4I1 1855 aaKnown RBP17.43■□□□□ 0.38
SNHG1-213ENST00000540725 GPR75-ASB3A0A0A6YYF3 556 aa17.43■□□□□ 0.38
SNHG1-213ENST00000540725 PRMT2P55345 433 aa17.43■□□□□ 0.38
SNHG1-213ENST00000540725 RHBDL3P58872 404 aa17.43■□□□□ 0.38
SNHG1-213ENST00000540725 MAP3K10Q02779 954 aa17.43■□□□□ 0.38
SNHG1-213ENST00000540725 G3BP1Q13283 466 aaKnown RBP eCLIP17.43■□□□□ 0.38
SNHG1-213ENST00000540725 SPATA5Q8NB90 893 aa17.43■□□□□ 0.38
SNHG1-213ENST00000540725 SH3TC2Q8TF17 1288 aa17.43■□□□□ 0.38
SNHG1-213ENST00000540725 MAST2Q6P0Q8 1798 aa17.42■□□□□ 0.38
SNHG1-213ENST00000540725 SLURP2P0DP57 97 aa17.42■□□□□ 0.38
SNHG1-213ENST00000540725 PTPRAP18433 802 aa17.42■□□□□ 0.38
SNHG1-213ENST00000540725 CTGFP29279 349 aa17.42■□□□□ 0.38
SNHG1-213ENST00000540725 ARID4AP29374 1257 aaPredicted RBP17.42■□□□□ 0.38
SNHG1-213ENST00000540725 PSMC4P43686 418 aa17.42■□□□□ 0.38
SNHG1-213ENST00000540725 SLC4A8Q2Y0W8 1093 aa17.42■□□□□ 0.38
SNHG1-213ENST00000540725 GPAT2Q6NUI2 795 aa17.42■□□□□ 0.38
SNHG1-213ENST00000540725 TRIM47Q96LD4 638 aa17.42■□□□□ 0.38
SNHG1-213ENST00000540725 PARK7Q99497 189 aaKnown RBP17.42■□□□□ 0.38
SNHG1-213ENST00000540725 ZHX2Q9Y6X8 837 aa17.42■□□□□ 0.38
SNHG1-213ENST00000540725 DOCK3Q8IZD9 2030 aa17.42■□□□□ 0.38
SNHG1-213ENST00000540725 CDK5RAP2Q96SN8 1893 aa17.42■□□□□ 0.38
SNHG1-213ENST00000540725 A0A0G2JLL6 359 aaPredicted RBP17.41■□□□□ 0.38
SNHG1-213ENST00000540725 MYCP01106 439 aaPredicted RBP17.41■□□□□ 0.38
SNHG1-213ENST00000540725 GSTO1P78417 241 aa17.41■□□□□ 0.38
SNHG1-213ENST00000540725 ZKSCAN2Q63HK3 967 aa17.41■□□□□ 0.38
SNHG1-213ENST00000540725 TBC1D9Q6ZT07 1266 aa17.41■□□□□ 0.38
SNHG1-213ENST00000540725 PRRT2Q7Z6L0 340 aaPredicted RBP17.41■□□□□ 0.38
SNHG1-213ENST00000540725 TMEM57Q8N5G2 664 aa17.41■□□□□ 0.38
SNHG1-213ENST00000540725 NSUN4Q96CB9 384 aaKnown RBP17.41■□□□□ 0.38
SNHG1-213ENST00000540725 SRRDQ9UH36 339 aa17.41■□□□□ 0.38
SNHG1-213ENST00000540725 CTNND1O60716 968 aaKnown RBP17.4■□□□□ 0.38
SNHG1-213ENST00000540725 NPM3O75607 178 aaKnown RBP17.4■□□□□ 0.38
SNHG1-213ENST00000540725 LDHCP07864 332 aa17.4■□□□□ 0.38
SNHG1-213ENST00000540725 CYP2C8P10632 490 aa17.4■□□□□ 0.38
SNHG1-213ENST00000540725 MCAMP43121 646 aa17.4■□□□□ 0.38
SNHG1-213ENST00000540725 FASTKD5Q7L8L6 764 aaKnown RBP17.4■□□□□ 0.38
SNHG1-213ENST00000540725 RAI14Q9P0K7 980 aa17.4■□□□□ 0.38
SNHG1-213ENST00000540725 AFG3L2Q9Y4W6 797 aa17.4■□□□□ 0.38
SNHG1-213ENST00000540725 FMNL1O95466 1100 aaPredicted RBP17.4■□□□□ 0.38
SNHG1-213ENST00000540725 MAP4K4O95819 1239 aaPredicted RBP17.4■□□□□ 0.38
SNHG1-213ENST00000540725 UQCRFS1P1P0C7P4 283 aa17.4■□□□□ 0.38
SNHG1-213ENST00000540725 BCRP11274 1271 aa17.4■□□□□ 0.38
SNHG1-213ENST00000540725 OSBPP22059 807 aa17.4■□□□□ 0.38
SNHG1-213ENST00000540725 HOXD10P28358 340 aa17.4■□□□□ 0.38
SNHG1-213ENST00000540725 GADL1Q6ZQY3 521 aa17.4■□□□□ 0.38
SNHG1-213ENST00000540725 COL2A1P02458 1487 aaPredicted RBP17.39■□□□□ 0.37
SNHG1-213ENST00000540725 FOCADQ5VW36 1801 aa17.39■□□□□ 0.37
SNHG1-213ENST00000540725 POLA2Q14181 598 aa17.39■□□□□ 0.37
SNHG1-213ENST00000540725 GCC1Q96CN9 775 aa17.39■□□□□ 0.37
SNHG1-213ENST00000540725 FRMD4AQ9P2Q2 1039 aaPredicted RBP17.39■□□□□ 0.37
SNHG1-213ENST00000540725 MYPNQ86TC9 1320 aa17.38■□□□□ 0.37
SNHG1-213ENST00000540725 SIPA1L1O43166 1804 aa17.38■□□□□ 0.37
SNHG1-213ENST00000540725 LOC285556D6RIA3 1793 aa17.38■□□□□ 0.37
SNHG1-213ENST00000540725 TRIM75PA6NK02 468 aa17.38■□□□□ 0.37
SNHG1-213ENST00000540725 FAM196BA6NMK8 535 aa17.38■□□□□ 0.37
SNHG1-213ENST00000540725 TBC1D12O60347 775 aa17.38■□□□□ 0.37
SNHG1-213ENST00000540725 CCDC84Q86UT8 332 aaPredicted RBP17.38■□□□□ 0.37
SNHG1-213ENST00000540725 RAET1EQ8TD07 263 aa17.38■□□□□ 0.37
SNHG1-213ENST00000540725 XPO5Q9HAV4 1204 aaKnown RBP eCLIP17.38■□□□□ 0.37
SNHG1-213ENST00000540725 GPR108Q9NPR9 543 aa17.38■□□□□ 0.37
SNHG1-213ENST00000540725 LRP2BPQ9P2M1 347 aa17.38■□□□□ 0.37
SNHG1-213ENST00000540725 GRK4P32298 578 aa17.37■□□□□ 0.37
SNHG1-213ENST00000540725 HNRNPUQ00839 825 aaKnown RBP eCLIP17.37■□□□□ 0.37
SNHG1-213ENST00000540725 OS9Q13438 667 aaPredicted RBP17.37■□□□□ 0.37
SNHG1-213ENST00000540725 TNNI3KQ59H18 835 aa17.37■□□□□ 0.37
SNHG1-213ENST00000540725 TEX11Q8IYF3 940 aa17.37■□□□□ 0.37
SNHG1-213ENST00000540725 SSH3Q8TE77 659 aa17.37■□□□□ 0.37
SNHG1-213ENST00000540725 OSBPL5Q9H0X9 879 aaPredicted RBP17.37■□□□□ 0.37
SNHG1-213ENST00000540725 SNRKQ9NRH2 765 aa17.37■□□□□ 0.37
SNHG1-213ENST00000540725 SLC45A1Q9Y2W3 748 aa17.37■□□□□ 0.37
SNHG1-213ENST00000540725 FPGT-TNNI3KV9GXZ4 949 aa17.37■□□□□ 0.37
SNHG1-213ENST00000540725 TRIOBPQ9H2D6 2365 aa17.36■□□□□ 0.37
SNHG1-213ENST00000540725 FCGRTP55899 365 aa17.36■□□□□ 0.37
SNHG1-213ENST00000540725 ATP8B2P98198 1209 aa17.36■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 79.2 ms