RNA–Protein interactions for RNA: ENST00000527154.5

CHMP4A-203, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 2

Gene CHMP4A, Length 571 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-203ENST00000527154 DOCK3Q8IZD9 2030 aa20.5■□□□□ 0.87
CHMP4A-203ENST00000527154 TNPO2O14787 897 aaKnown RBP20.5■□□□□ 0.87
CHMP4A-203ENST00000527154 PTPRAP18433 802 aa20.5■□□□□ 0.87
CHMP4A-203ENST00000527154 SCYL3Q8IZE3 742 aa20.5■□□□□ 0.87
CHMP4A-203ENST00000527154 TDHQ8IZJ6 230 aa20.5■□□□□ 0.87
CHMP4A-203ENST00000527154 XRN2Q9H0D6 950 aaKnown RBP eCLIP20.5■□□□□ 0.87
CHMP4A-203ENST00000527154 C9orf78Q9NZ63 289 aaPredicted RBP20.5■□□□□ 0.87
CHMP4A-203ENST00000527154 ZBTB22O15209 634 aa20.49■□□□□ 0.87
CHMP4A-203ENST00000527154 ZHX2Q9Y6X8 837 aa20.49■□□□□ 0.87
CHMP4A-203ENST00000527154 COL2A1P02458 1487 aaPredicted RBP20.49■□□□□ 0.87
CHMP4A-203ENST00000527154 LAMA2P24043 3122 aaKnown RBP20.48■□□□□ 0.87
CHMP4A-203ENST00000527154 FRAT2O75474 233 aaPredicted RBP20.48■□□□□ 0.87
CHMP4A-203ENST00000527154 NBPF7P0C2Y1 421 aaPredicted RBP20.48■□□□□ 0.87
CHMP4A-203ENST00000527154 MAGEA10P43363 369 aaPredicted RBP20.48■□□□□ 0.87
CHMP4A-203ENST00000527154 FAM110CQ1W6H9 321 aa20.48■□□□□ 0.87
CHMP4A-203ENST00000527154 ANKRD44Q8N8A2 993 aa20.48■□□□□ 0.87
CHMP4A-203ENST00000527154 WDR66Q8TBY9 1149 aa20.48■□□□□ 0.87
CHMP4A-203ENST00000527154 TCP10Q12799 353 aa20.47■□□□□ 0.87
CHMP4A-203ENST00000527154 METTL24Q5JXM2 366 aa20.47■□□□□ 0.87
CHMP4A-203ENST00000527154 ZFPM1Q8IX07 1006 aa20.47■□□□□ 0.87
CHMP4A-203ENST00000527154 C7orf61Q8IZ16 206 aa20.47■□□□□ 0.87
CHMP4A-203ENST00000527154 IDI2Q9BXS1 227 aa20.47■□□□□ 0.87
CHMP4A-203ENST00000527154 SRCIN1Q9C0H9 1055 aa20.47■□□□□ 0.87
CHMP4A-203ENST00000527154 NBPF3Q9H094 633 aa20.47■□□□□ 0.87
CHMP4A-203ENST00000527154 ZMYND8Q9ULU4 1186 aaPredicted RBP20.47■□□□□ 0.87
CHMP4A-203ENST00000527154 PHIPQ8WWQ0 1821 aa20.47■□□□□ 0.87
CHMP4A-203ENST00000527154 BICC1Q9H694 974 aaKnown RBP20.46■□□□□ 0.87
CHMP4A-203ENST00000527154 GJD2Q9UKL4 321 aa20.46■□□□□ 0.87
CHMP4A-203ENST00000527154 OGDHLQ9ULD0 1010 aa20.46■□□□□ 0.87
CHMP4A-203ENST00000527154 AGTPBP1Q9UPW5 1226 aa20.46■□□□□ 0.87
CHMP4A-203ENST00000527154 HMGCRP04035 888 aa20.45■□□□□ 0.86
CHMP4A-203ENST00000527154 PUM3Q15397 648 aaKnown RBP20.45■□□□□ 0.86
CHMP4A-203ENST00000527154 DIXDC1Q155Q3 683 aa20.45■□□□□ 0.86
CHMP4A-203ENST00000527154 FAM109BQ6ICB4 259 aaPredicted RBP20.45■□□□□ 0.86
CHMP4A-203ENST00000527154 SH3BP5LQ7L8J4 393 aa20.45■□□□□ 0.86
CHMP4A-203ENST00000527154 COA7Q96BR5 231 aa20.45■□□□□ 0.86
CHMP4A-203ENST00000527154 RPTORQ8N122 1335 aa20.45■□□□□ 0.86
CHMP4A-203ENST00000527154 SALL1Q9NSC2 1324 aa20.45■□□□□ 0.86
CHMP4A-203ENST00000527154 EYSQ5T1H1 3165 aa20.44■□□□□ 0.86
CHMP4A-203ENST00000527154 POTEB2H3BUK9 544 aa20.44■□□□□ 0.86
CHMP4A-203ENST00000527154 ENTPD3O75355 529 aa20.44■□□□□ 0.86
CHMP4A-203ENST00000527154 EXOSC9Q06265 439 aaKnown RBP20.44■□□□□ 0.86
CHMP4A-203ENST00000527154 MAP3K21Q5TCX8 1036 aa20.44■□□□□ 0.86
CHMP4A-203ENST00000527154 DOCK2Q92608 1830 aa20.43■□□□□ 0.86
CHMP4A-203ENST00000527154 CTNND1O60716 968 aaKnown RBP20.43■□□□□ 0.86
CHMP4A-203ENST00000527154 IFIT1P09914 478 aaKnown RBP20.43■□□□□ 0.86
CHMP4A-203ENST00000527154 PRDX5P30044 214 aa20.43■□□□□ 0.86
CHMP4A-203ENST00000527154 WDR63Q8IWG1 891 aa20.43■□□□□ 0.86
CHMP4A-203ENST00000527154 PHF6Q8IWS0 365 aaKnown RBP eCLIP20.43■□□□□ 0.86
CHMP4A-203ENST00000527154 ANKRD13CQ8N6S4 541 aa20.43■□□□□ 0.86
CHMP4A-203ENST00000527154 SMCR8Q8TEV9 937 aaPredicted RBP20.43■□□□□ 0.86
CHMP4A-203ENST00000527154 SPINK5Q9NQ38 1064 aaPredicted RBP20.43■□□□□ 0.86
CHMP4A-203ENST00000527154 PFASO15067 1338 aa20.43■□□□□ 0.86
CHMP4A-203ENST00000527154 DDX60LQ5H9U9 1706 aaKnown RBP20.42■□□□□ 0.86
CHMP4A-203ENST00000527154 COL6A1P12109 1028 aa20.42■□□□□ 0.86
CHMP4A-203ENST00000527154 GADL1Q6ZQY3 521 aa20.42■□□□□ 0.86
CHMP4A-203ENST00000527154 C11orf49Q9H6J7 331 aa20.42■□□□□ 0.86
CHMP4A-203ENST00000527154 PICK1Q9NRD5 415 aa20.42■□□□□ 0.86
CHMP4A-203ENST00000527154 GAKO14976 1311 aa20.42■□□□□ 0.86
CHMP4A-203ENST00000527154 PROCA1Q8NCQ7 364 aaPredicted RBP20.41■□□□□ 0.86
CHMP4A-203ENST00000527154 HMX1Q9NP08 348 aaPredicted RBP20.41■□□□□ 0.86
CHMP4A-203ENST00000527154 USP40Q9NVE5 1235 aa20.41■□□□□ 0.86
CHMP4A-203ENST00000527154 DOCK1Q14185 1865 aa20.41■□□□□ 0.86
CHMP4A-203ENST00000527154 SYN1P17600 705 aa20.4■□□□□ 0.86
CHMP4A-203ENST00000527154 TRIM32Q13049 653 aa20.4■□□□□ 0.86
CHMP4A-203ENST00000527154 TREML2Q5T2D2 321 aa20.4■□□□□ 0.86
CHMP4A-203ENST00000527154 LPIN2Q92539 896 aa20.4■□□□□ 0.86
CHMP4A-203ENST00000527154 GUCD1Q96NT3 240 aa20.4■□□□□ 0.86
CHMP4A-203ENST00000527154 PNMA3Q9UL41 463 aa20.4■□□□□ 0.86
CHMP4A-203ENST00000527154 LOC285556D6RIA3 1793 aa20.39■□□□□ 0.86
CHMP4A-203ENST00000527154 RFX5P48382 616 aaPredicted RBP20.39■□□□□ 0.85
CHMP4A-203ENST00000527154 GCLCP48506 637 aaPredicted RBP20.39■□□□□ 0.85
CHMP4A-203ENST00000527154 RGS3P49796 1198 aa20.39■□□□□ 0.85
CHMP4A-203ENST00000527154 KLHDC4Q8TBB5 520 aa20.39■□□□□ 0.85
CHMP4A-203ENST00000527154 FAM163AQ96GL9 167 aaPredicted RBP20.39■□□□□ 0.85
CHMP4A-203ENST00000527154 UBE2OQ9C0C9 1292 aaKnown RBP20.39■□□□□ 0.85
CHMP4A-203ENST00000527154 AK9Q5TCS8 1911 aa20.39■□□□□ 0.85
CHMP4A-203ENST00000527154 PLXNB2O15031 1838 aa20.39■□□□□ 0.85
CHMP4A-203ENST00000527154 MYH13Q9UKX3 1938 aa20.38■□□□□ 0.85
CHMP4A-203ENST00000527154 DDTLA6NHG4 134 aaPredicted RBP20.38■□□□□ 0.85
CHMP4A-203ENST00000527154 TBC1D12O60347 775 aa20.38■□□□□ 0.85
CHMP4A-203ENST00000527154 PRUNE2Q8WUY3 3088 aa20.38■□□□□ 0.85
CHMP4A-203ENST00000527154 MUC3AQ02505 3323 aa20.38■□□□□ 0.85
CHMP4A-203ENST00000527154 TRIM75PA6NK02 468 aa20.37■□□□□ 0.85
CHMP4A-203ENST00000527154 LDHBP07195 334 aaKnown RBP20.37■□□□□ 0.85
CHMP4A-203ENST00000527154 SLURP2P0DP57 97 aa20.37■□□□□ 0.85
CHMP4A-203ENST00000527154 SLC5A1P13866 664 aa20.37■□□□□ 0.85
CHMP4A-203ENST00000527154 CCDC184Q52MB2 194 aa20.37■□□□□ 0.85
CHMP4A-203ENST00000527154 SLC4A10Q6U841 1118 aa20.37■□□□□ 0.85
CHMP4A-203ENST00000527154 TRIB2Q92519 343 aa20.37■□□□□ 0.85
CHMP4A-203ENST00000527154 MORF4L1Q9UBU8 362 aa20.37■□□□□ 0.85
CHMP4A-203ENST00000527154 EYA2O00167 538 aa20.36■□□□□ 0.85
CHMP4A-203ENST00000527154 NPM3O75607 178 aaKnown RBP20.36■□□□□ 0.85
CHMP4A-203ENST00000527154 ATG9AQ7Z3C6 839 aa20.36■□□□□ 0.85
CHMP4A-203ENST00000527154 DDX4Q9NQI0 724 aaKnown RBP20.36■□□□□ 0.85
CHMP4A-203ENST00000527154 FRMD4AQ9P2Q2 1039 aaPredicted RBP20.36■□□□□ 0.85
CHMP4A-203ENST00000527154 LRRFIP2Q9Y608 721 aaKnown RBP20.36■□□□□ 0.85
CHMP4A-203ENST00000527154 DNAH12Q6ZR08 3092 aa20.35■□□□□ 0.85
CHMP4A-203ENST00000527154 SEMA3EO15041 775 aa20.35■□□□□ 0.85
CHMP4A-203ENST00000527154 XRCC5P13010 732 aaKnown RBP20.35■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms