RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 CERS5Q8N5B7 392 aa10.17□□□□□ -0.78
LIMCH1-209ENST00000509277 SH3RF3Q8TEJ3 882 aaPredicted RBP10.17□□□□□ -0.78
LIMCH1-209ENST00000509277 NACAP1Q9BZK3 213 aa10.17□□□□□ -0.78
LIMCH1-209ENST00000509277 LSG1Q9H089 658 aaKnown RBP10.17□□□□□ -0.78
LIMCH1-209ENST00000509277 TCP10L2B9ZVM9 353 aa10.17□□□□□ -0.78
LIMCH1-209ENST00000509277 RANBP6O60518 1105 aaKnown RBP10.17□□□□□ -0.78
LIMCH1-209ENST00000509277 FGAP02671 866 aa10.17□□□□□ -0.78
LIMCH1-209ENST00000509277 EIF6P56537 245 aaKnown RBP10.17□□□□□ -0.78
LIMCH1-209ENST00000509277 EVX2Q03828 476 aa10.17□□□□□ -0.78
LIMCH1-209ENST00000509277 TBC1D10BQ4KMP7 808 aaPredicted RBP10.17□□□□□ -0.78
LIMCH1-209ENST00000509277 ANKRD31Q8N7Z5 1873 aa10.17□□□□□ -0.78
LIMCH1-209ENST00000509277 NSUN4Q96CB9 384 aaKnown RBP10.17□□□□□ -0.78
LIMCH1-209ENST00000509277 TDRD3Q9H7E2 651 aaKnown RBP10.17□□□□□ -0.78
LIMCH1-209ENST00000509277 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP10.17□□□□□ -0.78
LIMCH1-209ENST00000509277 AK9Q5TCS8 1911 aa10.17□□□□□ -0.78
LIMCH1-209ENST00000509277 FAM196BA6NMK8 535 aa10.16□□□□□ -0.78
LIMCH1-209ENST00000509277 BAG3O95817 575 aa10.16□□□□□ -0.78
LIMCH1-209ENST00000509277 CYP2D6P10635 497 aa10.16□□□□□ -0.78
LIMCH1-209ENST00000509277 TRDNQ13061 729 aa10.16□□□□□ -0.78
LIMCH1-209ENST00000509277 PRKG1Q13976 671 aa10.16□□□□□ -0.78
LIMCH1-209ENST00000509277 IMMTQ16891 758 aaKnown RBP10.16□□□□□ -0.78
LIMCH1-209ENST00000509277 USP40Q9NVE5 1235 aa10.16□□□□□ -0.78
LIMCH1-209ENST00000509277 C10orf71Q711Q0 1435 aa10.16□□□□□ -0.78
LIMCH1-209ENST00000509277 YDJCA8MPS7 323 aa10.16□□□□□ -0.78
LIMCH1-209ENST00000509277 NFKBIEO00221 500 aa10.16□□□□□ -0.78
LIMCH1-209ENST00000509277 CRNKL1Q9BZJ0 848 aaKnown RBP10.16□□□□□ -0.78
LIMCH1-209ENST00000509277 HELLSQ9NRZ9 838 aa10.16□□□□□ -0.78
LIMCH1-209ENST00000509277 COL1A1P02452 1464 aaPredicted RBP10.16□□□□□ -0.78
LIMCH1-209ENST00000509277 USP17L12C9JPN9 530 aa10.16□□□□□ -0.78
LIMCH1-209ENST00000509277 USP17L21D6R901 530 aa10.16□□□□□ -0.78
LIMCH1-209ENST00000509277 SLC27A2O14975 620 aa10.16□□□□□ -0.78
LIMCH1-209ENST00000509277 LDHCP07864 332 aa10.16□□□□□ -0.78
LIMCH1-209ENST00000509277 USP17L8P0C7I0 530 aa10.16□□□□□ -0.78
LIMCH1-209ENST00000509277 PODNQ7Z5L7 613 aa10.16□□□□□ -0.78
LIMCH1-209ENST00000509277 K7ELQ4 463 aaPredicted RBP10.15□□□□□ -0.78
LIMCH1-209ENST00000509277 CXCL9Q07325 125 aa10.15□□□□□ -0.78
LIMCH1-209ENST00000509277 COL9A3Q14050 684 aaPredicted RBP10.15□□□□□ -0.78
LIMCH1-209ENST00000509277 CC2D2BQ6DHV5 1058 aa10.15□□□□□ -0.78
LIMCH1-209ENST00000509277 CIAPIN1Q6FI81 312 aa10.15□□□□□ -0.78
LIMCH1-209ENST00000509277 CCDC144CPQ8IYA2 1237 aa10.15□□□□□ -0.78
LIMCH1-209ENST00000509277 TEKT1Q969V4 418 aa10.15□□□□□ -0.78
LIMCH1-209ENST00000509277 SGIP1Q9BQI5 828 aa10.15□□□□□ -0.78
LIMCH1-209ENST00000509277 NOL7Q9UMY1 257 aaKnown RBP10.15□□□□□ -0.78
LIMCH1-209ENST00000509277 SNX14Q9Y5W7 946 aa10.15□□□□□ -0.78
LIMCH1-209ENST00000509277 MED23Q9ULK4 1368 aa10.15□□□□□ -0.78
LIMCH1-209ENST00000509277 RAD50Q92878 1312 aa10.15□□□□□ -0.78
LIMCH1-209ENST00000509277 CYP21A2P08686 494 aa10.15□□□□□ -0.78
LIMCH1-209ENST00000509277 YBX3P16989 372 aaKnown RBP eCLIP10.15□□□□□ -0.78
LIMCH1-209ENST00000509277 PRAMEF18Q5VWM3 479 aa10.15□□□□□ -0.78
LIMCH1-209ENST00000509277 BLOC1S2Q6QNY1 142 aa10.15□□□□□ -0.78
LIMCH1-209ENST00000509277 SAMD7Q7Z3H4 446 aa10.15□□□□□ -0.78
LIMCH1-209ENST00000509277 C7orf43Q8WVR3 580 aa10.15□□□□□ -0.78
LIMCH1-209ENST00000509277 PIBF1Q8WXW3 757 aa10.15□□□□□ -0.78
LIMCH1-209ENST00000509277 COL24A1Q17RW2 1714 aa10.15□□□□□ -0.78
LIMCH1-209ENST00000509277 B4E1Z4 1266 aa10.15□□□□□ -0.79
LIMCH1-209ENST00000509277 ST18O60284 1047 aa10.15□□□□□ -0.79
LIMCH1-209ENST00000509277 RXRAP19793 462 aa10.15□□□□□ -0.79
LIMCH1-209ENST00000509277 UBE3CQ15386 1083 aa10.15□□□□□ -0.79
LIMCH1-209ENST00000509277 NFXL1Q6ZNB6 911 aa10.15□□□□□ -0.79
LIMCH1-209ENST00000509277 AMOTL1Q8IY63 956 aa10.15□□□□□ -0.79
LIMCH1-209ENST00000509277 IFNL3Q8IZI9 196 aa10.15□□□□□ -0.79
LIMCH1-209ENST00000509277 CCDC82Q8N4S0 544 aa10.15□□□□□ -0.79
LIMCH1-209ENST00000509277 TBC1D22AQ8WUA7 517 aa10.15□□□□□ -0.79
LIMCH1-209ENST00000509277 C16orf45Q96MC5 204 aaPredicted RBP10.15□□□□□ -0.79
LIMCH1-209ENST00000509277 STRBPQ96SI9 672 aaKnown RBP10.15□□□□□ -0.79
LIMCH1-209ENST00000509277 U3KPZ7 1027 aaPredicted RBP10.15□□□□□ -0.79
LIMCH1-209ENST00000509277 MPHOSPH10O00566 681 aaKnown RBP10.14□□□□□ -0.79
LIMCH1-209ENST00000509277 CRKP46108 304 aa10.14□□□□□ -0.79
LIMCH1-209ENST00000509277 GSTO1P78417 241 aa10.14□□□□□ -0.79
LIMCH1-209ENST00000509277 NAA30Q147X3 362 aaPredicted RBP10.14□□□□□ -0.79
LIMCH1-209ENST00000509277 SOGA3Q5TF21 947 aa10.14□□□□□ -0.79
LIMCH1-209ENST00000509277 ZNF384Q8TF68 577 aa10.14□□□□□ -0.79
LIMCH1-209ENST00000509277 PPIL4Q8WUA2 492 aaKnown RBP eCLIP10.14□□□□□ -0.79
LIMCH1-209ENST00000509277 DYNLL2Q96FJ2 89 aa10.14□□□□□ -0.79
LIMCH1-209ENST00000509277 ZNRF3Q9ULT6 936 aa10.14□□□□□ -0.79
LIMCH1-209ENST00000509277 MYO5AQ9Y4I1 1855 aaKnown RBP10.14□□□□□ -0.79
LIMCH1-209ENST00000509277 SEMA3EO15041 775 aa10.14□□□□□ -0.79
LIMCH1-209ENST00000509277 DDNO94850 711 aaPredicted RBP10.14□□□□□ -0.79
LIMCH1-209ENST00000509277 DLGAP5Q15398 846 aa10.14□□□□□ -0.79
LIMCH1-209ENST00000509277 EAPPQ56P03 285 aaPredicted RBP10.14□□□□□ -0.79
LIMCH1-209ENST00000509277 SLC44A5Q8NCS7 719 aa10.14□□□□□ -0.79
LIMCH1-209ENST00000509277 MKNK2Q9HBH9 465 aa10.14□□□□□ -0.79
LIMCH1-209ENST00000509277 CYP46A1Q9Y6A2 500 aa10.14□□□□□ -0.79
LIMCH1-209ENST00000509277 COL11A2P13942 1736 aaPredicted RBP10.13□□□□□ -0.79
LIMCH1-209ENST00000509277 CFAP100Q494V2 611 aa10.13□□□□□ -0.79
LIMCH1-209ENST00000509277 FAM47AQ5JRC9 791 aa10.13□□□□□ -0.79
LIMCH1-209ENST00000509277 C9orf131Q5VYM1 1079 aa10.13□□□□□ -0.79
LIMCH1-209ENST00000509277 CRACR2BQ8N4Y2 399 aaPredicted RBP10.13□□□□□ -0.79
LIMCH1-209ENST00000509277 GPHNQ9NQX3 736 aaPredicted RBP10.13□□□□□ -0.79
LIMCH1-209ENST00000509277 TMEM51Q9NW97 253 aa10.13□□□□□ -0.79
LIMCH1-209ENST00000509277 DAGLAQ9Y4D2 1042 aa10.13□□□□□ -0.79
LIMCH1-209ENST00000509277 SOCS7O14512 581 aa10.13□□□□□ -0.79
LIMCH1-209ENST00000509277 IL1R1P14778 569 aa10.13□□□□□ -0.79
LIMCH1-209ENST00000509277 PDRG1Q9NUG6 133 aa10.13□□□□□ -0.79
LIMCH1-209ENST00000509277 TMOD2Q9NZR1 351 aa10.13□□□□□ -0.79
LIMCH1-209ENST00000509277 CTNNA3Q9UI47 895 aa10.13□□□□□ -0.79
LIMCH1-209ENST00000509277 HDAC9Q9UKV0 1011 aa10.13□□□□□ -0.79
LIMCH1-209ENST00000509277 NOLC1Q14978 699 aaKnown RBP eCLIP10.13□□□□□ -0.79
LIMCH1-209ENST00000509277 NECAB1Q8N987 351 aa10.13□□□□□ -0.79
LIMCH1-209ENST00000509277 MAP4K1Q92918 833 aa10.13□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms