RNA–Protein interactions for RNA: ENST00000498259.1

SF3A1-210, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 875 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-210ENST00000498259 LTBP1Q14766 1721 aa9.93□□□□□ -0.82
SF3A1-210ENST00000498259 USP17L12C9JPN9 530 aa9.92□□□□□ -0.82
SF3A1-210ENST00000498259 USP17L21D6R901 530 aa9.92□□□□□ -0.82
SF3A1-210ENST00000498259 CPLX1O14810 134 aa9.92□□□□□ -0.82
SF3A1-210ENST00000498259 IFIT3O14879 490 aaKnown RBP9.92□□□□□ -0.82
SF3A1-210ENST00000498259 PRKAB2O43741 272 aa9.92□□□□□ -0.82
SF3A1-210ENST00000498259 ORC4O43929 436 aa9.92□□□□□ -0.82
SF3A1-210ENST00000498259 CALM1P0DP23 149 aa9.92□□□□□ -0.82
SF3A1-210ENST00000498259 CALM2P0DP24 149 aa9.92□□□□□ -0.82
SF3A1-210ENST00000498259 CALM3P0DP25 149 aa9.92□□□□□ -0.82
SF3A1-210ENST00000498259 CPA1P15085 419 aa9.92□□□□□ -0.82
SF3A1-210ENST00000498259 DDIT3P35638 169 aa9.92□□□□□ -0.82
SF3A1-210ENST00000498259 DYNLL1P63167 89 aaKnown RBP9.92□□□□□ -0.82
SF3A1-210ENST00000498259 TOB2Q14106 344 aaPredicted RBP9.92□□□□□ -0.82
SF3A1-210ENST00000498259 AOC3Q16853 763 aa9.92□□□□□ -0.82
SF3A1-210ENST00000498259 TMEM67Q5HYA8 995 aa9.92□□□□□ -0.82
SF3A1-210ENST00000498259 DACT2Q5SW24 774 aa9.92□□□□□ -0.82
SF3A1-210ENST00000498259 CTR9Q6PD62 1173 aa9.92□□□□□ -0.82
SF3A1-210ENST00000498259 MB21D2Q8IYB1 491 aaPredicted RBP9.92□□□□□ -0.82
SF3A1-210ENST00000498259 ZNF444Q8N0Y2 327 aaPredicted RBP9.92□□□□□ -0.82
SF3A1-210ENST00000498259 KLHL34Q8N239 644 aa9.92□□□□□ -0.82
SF3A1-210ENST00000498259 FAM184AQ8NB25 1140 aa9.92□□□□□ -0.82
SF3A1-210ENST00000498259 RGS22Q8NE09 1264 aa9.92□□□□□ -0.82
SF3A1-210ENST00000498259 GTF3C6Q969F1 213 aa9.92□□□□□ -0.82
SF3A1-210ENST00000498259 ZDHHC15Q96MV8 337 aa9.92□□□□□ -0.82
SF3A1-210ENST00000498259 DHX36Q9H2U1 1008 aaKnown RBP9.92□□□□□ -0.82
SF3A1-210ENST00000498259 MKNK2Q9HBH9 465 aa9.92□□□□□ -0.82
SF3A1-210ENST00000498259 EPB41L4AQ9HCS5 686 aaPredicted RBP9.92□□□□□ -0.82
SF3A1-210ENST00000498259 TMOD2Q9NZR1 351 aa9.92□□□□□ -0.82
SF3A1-210ENST00000498259 TPCN1Q9ULQ1 816 aa9.92□□□□□ -0.82
SF3A1-210ENST00000498259 NAP1L2Q9ULW6 460 aaPredicted RBP9.92□□□□□ -0.82
SF3A1-210ENST00000498259 SLC12A7Q9Y666 1083 aa9.92□□□□□ -0.82
SF3A1-210ENST00000498259 COL11A2P13942 1736 aaPredicted RBP9.92□□□□□ -0.82
SF3A1-210ENST00000498259 LTBP3Q9NS15 1303 aa9.91□□□□□ -0.82
SF3A1-210ENST00000498259 DDX11L8A8MPP1 907 aa9.91□□□□□ -0.82
SF3A1-210ENST00000498259 B4E1Z4 1266 aa9.91□□□□□ -0.82
SF3A1-210ENST00000498259 MYO1BO43795 1136 aa9.91□□□□□ -0.82
SF3A1-210ENST00000498259 PFKFB2O60825 505 aa9.91□□□□□ -0.82
SF3A1-210ENST00000498259 KDM4AO75164 1064 aa9.91□□□□□ -0.82
SF3A1-210ENST00000498259 HLA-DOAP06340 250 aa9.91□□□□□ -0.82
SF3A1-210ENST00000498259 FGRP09769 529 aa9.91□□□□□ -0.82
SF3A1-210ENST00000498259 IARSP41252 1262 aaKnown RBP9.91□□□□□ -0.82
SF3A1-210ENST00000498259 RBM5P52756 815 aaKnown RBP eCLIP9.91□□□□□ -0.82
SF3A1-210ENST00000498259 WTAPQ15007 396 aa9.91□□□□□ -0.82
SF3A1-210ENST00000498259 RAB3GAP1Q15042 981 aa9.91□□□□□ -0.82
SF3A1-210ENST00000498259 DIXDC1Q155Q3 683 aa9.91□□□□□ -0.82
SF3A1-210ENST00000498259 ME3Q16798 604 aa9.91□□□□□ -0.82
SF3A1-210ENST00000498259 CSPP1Q1MSJ5 1256 aa9.91□□□□□ -0.82
SF3A1-210ENST00000498259 RRP12Q5JTH9 1297 aaKnown RBP9.91□□□□□ -0.82
SF3A1-210ENST00000498259 C12orf60Q5U649 245 aa9.91□□□□□ -0.82
SF3A1-210ENST00000498259 OLFM4Q6UX06 510 aa9.91□□□□□ -0.82
SF3A1-210ENST00000498259 STOX1Q6ZVD7 989 aa9.91□□□□□ -0.82
SF3A1-210ENST00000498259 SGMS1Q86VZ5 419 aa9.91□□□□□ -0.82
SF3A1-210ENST00000498259 AGBL3Q8NEM8 1001 aa9.91□□□□□ -0.82
SF3A1-210ENST00000498259 SH3RF3Q8TEJ3 882 aaPredicted RBP9.91□□□□□ -0.82
SF3A1-210ENST00000498259 ZNF384Q8TF68 577 aa9.91□□□□□ -0.82
SF3A1-210ENST00000498259 TGFBRAP1Q8WUH2 860 aa9.91□□□□□ -0.82
SF3A1-210ENST00000498259 FOXD4L1Q9NU39 408 aa9.91□□□□□ -0.82
SF3A1-210ENST00000498259 USP40Q9NVE5 1235 aa9.91□□□□□ -0.82
SF3A1-210ENST00000498259 ZSWIM5Q9P217 1185 aa9.91□□□□□ -0.82
SF3A1-210ENST00000498259 CACNA1SQ13698 1873 aa9.91□□□□□ -0.82
SF3A1-210ENST00000498259 KLF18A0A0U1RQI7 1052 aa9.9□□□□□ -0.82
SF3A1-210ENST00000498259 TSPY2A6NKD2 308 aa9.9□□□□□ -0.82
SF3A1-210ENST00000498259 F8W031 263 aaPredicted RBP9.9□□□□□ -0.82
SF3A1-210ENST00000498259 ZBTB43O43298 467 aa9.9□□□□□ -0.82
SF3A1-210ENST00000498259 RANBP6O60518 1105 aaKnown RBP9.9□□□□□ -0.82
SF3A1-210ENST00000498259 RPS12P25398 132 aaKnown RBP9.9□□□□□ -0.82
SF3A1-210ENST00000498259 CRKP46108 304 aa9.9□□□□□ -0.82
SF3A1-210ENST00000498259 CTDSPL2Q05D32 466 aa9.9□□□□□ -0.82
SF3A1-210ENST00000498259 RSBN1LQ6PCB5 846 aaPredicted RBP9.9□□□□□ -0.82
SF3A1-210ENST00000498259 CATIPQ7Z7H3 387 aa9.9□□□□□ -0.82
SF3A1-210ENST00000498259 TBC1D10CQ8IV04 446 aa9.9□□□□□ -0.82
SF3A1-210ENST00000498259 CCDC83Q8IWF9 413 aa9.9□□□□□ -0.82
SF3A1-210ENST00000498259 WASF1Q92558 559 aa9.9□□□□□ -0.82
SF3A1-210ENST00000498259 SGIP1Q9BQI5 828 aa9.9□□□□□ -0.82
SF3A1-210ENST00000498259 SWAP70Q9UH65 585 aa9.9□□□□□ -0.82
SF3A1-210ENST00000498259 BCS1LQ9Y276 419 aa9.9□□□□□ -0.82
SF3A1-210ENST00000498259 DAGLAQ9Y4D2 1042 aa9.9□□□□□ -0.82
SF3A1-210ENST00000498259 SLX4Q8IY92 1834 aa9.9□□□□□ -0.82
SF3A1-210ENST00000498259 KIF13BQ9NQT8 1826 aa9.9□□□□□ -0.82
SF3A1-210ENST00000498259 DLEC1Q9Y238 1755 aa9.9□□□□□ -0.82
SF3A1-210ENST00000498259 PSDA5PKW4 1024 aaPredicted RBP9.89□□□□□ -0.83
SF3A1-210ENST00000498259 GOLGA8BA8MQT2 603 aa9.89□□□□□ -0.83
SF3A1-210ENST00000498259 SH2B2O14492 632 aaPredicted RBP9.89□□□□□ -0.83
SF3A1-210ENST00000498259 VIL1P09327 827 aaKnown RBP9.89□□□□□ -0.83
SF3A1-210ENST00000498259 PDIA3P30101 505 aaKnown RBP9.89□□□□□ -0.83
SF3A1-210ENST00000498259 PTGER2P43116 358 aa9.89□□□□□ -0.83
SF3A1-210ENST00000498259 EIF6P56537 245 aaKnown RBP9.89□□□□□ -0.83
SF3A1-210ENST00000498259 LARP1BQ659C4 914 aaKnown RBP9.89□□□□□ -0.83
SF3A1-210ENST00000498259 KIAA0825Q8IV33 1275 aa9.89□□□□□ -0.83
SF3A1-210ENST00000498259 TCEANC2Q96MN5 208 aa9.89□□□□□ -0.83
SF3A1-210ENST00000498259 ZSCAN10Q96SZ4 725 aaPredicted RBP9.89□□□□□ -0.83
SF3A1-210ENST00000498259 TRIM34Q9BYJ4 488 aa9.89□□□□□ -0.83
SF3A1-210ENST00000498259 TAF6LQ9Y6J9 622 aa9.89□□□□□ -0.83
SF3A1-210ENST00000498259 KIAA1551Q9HCM1 1747 aa9.89□□□□□ -0.83
SF3A1-210ENST00000498259 FLT1P17948 1338 aa9.88□□□□□ -0.83
SF3A1-210ENST00000498259 H3BQV1 296 aa9.88□□□□□ -0.83
SF3A1-210ENST00000498259 STX6O43752 255 aa9.88□□□□□ -0.83
SF3A1-210ENST00000498259 USP17L8P0C7I0 530 aa9.88□□□□□ -0.83
SF3A1-210ENST00000498259 TSPY3P0CV98 308 aa9.88□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms