RNA–Protein interactions for RNA: ENST00000478214.1

HMGA1-206, Transcript of high mobility group AT-hook 1, humanhuman

TSL 1 (best)

Gene HMGA1, Length 716 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-206ENST00000478214 WNK4Q96J92 1243 aa18.96■□□□□ 0.63
HMGA1-206ENST00000478214 WRNIP1Q96S55 665 aa18.96■□□□□ 0.63
HMGA1-206ENST00000478214 ZNF341Q9BYN7 854 aa18.96■□□□□ 0.63
HMGA1-206ENST00000478214 DDTLA6NHG4 134 aaPredicted RBP18.95■□□□□ 0.62
HMGA1-206ENST00000478214 NPM3O75607 178 aaKnown RBP18.95■□□□□ 0.62
HMGA1-206ENST00000478214 GJA5P36382 358 aa18.95■□□□□ 0.62
HMGA1-206ENST00000478214 LBX1P52954 281 aa18.95■□□□□ 0.62
HMGA1-206ENST00000478214 DYNLL1P63167 89 aaKnown RBP18.95■□□□□ 0.62
HMGA1-206ENST00000478214 HDAC1Q13547 482 aaPredicted RBP18.95■□□□□ 0.62
HMGA1-206ENST00000478214 HAUS7Q99871 368 aa18.95■□□□□ 0.62
HMGA1-206ENST00000478214 ECHDC1Q9NTX5 307 aa18.95■□□□□ 0.62
HMGA1-206ENST00000478214 MYO5AQ9Y4I1 1855 aaKnown RBP18.94■□□□□ 0.62
HMGA1-206ENST00000478214 ATRNL1Q5VV63 1379 aa18.94■□□□□ 0.62
HMGA1-206ENST00000478214 MAST2Q6P0Q8 1798 aa18.94■□□□□ 0.62
HMGA1-206ENST00000478214 CA12O43570 354 aa18.94■□□□□ 0.62
HMGA1-206ENST00000478214 PLCG2P16885 1265 aa18.94■□□□□ 0.62
HMGA1-206ENST00000478214 COL13A1Q5TAT6 717 aaPredicted RBP18.94■□□□□ 0.62
HMGA1-206ENST00000478214 TSHZ3Q63HK5 1081 aa18.94■□□□□ 0.62
HMGA1-206ENST00000478214 REM2Q8IYK8 340 aaPredicted RBP18.94■□□□□ 0.62
HMGA1-206ENST00000478214 MIGA1Q8NAN2 632 aa18.94■□□□□ 0.62
HMGA1-206ENST00000478214 CNKSR2Q8WXI2 1034 aa18.94■□□□□ 0.62
HMGA1-206ENST00000478214 ZKSCAN4Q969J2 545 aaPredicted RBP18.94■□□□□ 0.62
HMGA1-206ENST00000478214 PAG1Q9NWQ8 432 aa18.94■□□□□ 0.62
HMGA1-206ENST00000478214 CSADQ9Y600 493 aa18.94■□□□□ 0.62
HMGA1-206ENST00000478214 SLURP2P0DP57 97 aa18.93■□□□□ 0.62
HMGA1-206ENST00000478214 ZBTB48P10074 688 aaPredicted RBP18.93■□□□□ 0.62
HMGA1-206ENST00000478214 PDE6AP16499 860 aa18.93■□□□□ 0.62
HMGA1-206ENST00000478214 INPP5BP32019 993 aa18.93■□□□□ 0.62
HMGA1-206ENST00000478214 SLC9C2Q5TAH2 1124 aa18.93■□□□□ 0.62
HMGA1-206ENST00000478214 OPTNQ96CV9 577 aa18.93■□□□□ 0.62
HMGA1-206ENST00000478214 OSBPL5Q9H0X9 879 aaPredicted RBP18.93■□□□□ 0.62
HMGA1-206ENST00000478214 RNF186Q9NXI6 227 aa18.93■□□□□ 0.62
HMGA1-206ENST00000478214 ZNF112Q9UJU3 913 aa18.93■□□□□ 0.62
HMGA1-206ENST00000478214 SNCAIPQ9Y6H5 919 aa18.93■□□□□ 0.62
HMGA1-206ENST00000478214 TRPA1O75762 1119 aa18.92■□□□□ 0.62
HMGA1-206ENST00000478214 TM4SF4P48230 202 aa18.92■□□□□ 0.62
HMGA1-206ENST00000478214 IRX6P78412 446 aaPredicted RBP18.92■□□□□ 0.62
HMGA1-206ENST00000478214 TMED8Q6PL24 325 aaPredicted RBP18.92■□□□□ 0.62
HMGA1-206ENST00000478214 MAPKAPK5Q8IW41 473 aa18.92■□□□□ 0.62
HMGA1-206ENST00000478214 OTUD7AQ8TE49 926 aaPredicted RBP18.92■□□□□ 0.62
HMGA1-206ENST00000478214 TGFBRAP1Q8WUH2 860 aa18.92■□□□□ 0.62
HMGA1-206ENST00000478214 GPATCH3Q96I76 525 aa18.92■□□□□ 0.62
HMGA1-206ENST00000478214 PRDM10Q9NQV6 1147 aa18.92■□□□□ 0.62
HMGA1-206ENST00000478214 OTOFQ9HC10 1997 aa18.92■□□□□ 0.62
HMGA1-206ENST00000478214 SREBF2Q12772 1141 aa18.91■□□□□ 0.62
HMGA1-206ENST00000478214 ANKRD45Q5TZF3 282 aa18.91■□□□□ 0.62
HMGA1-206ENST00000478214 GCC1Q96CN9 775 aa18.91■□□□□ 0.62
HMGA1-206ENST00000478214 ZNF532Q9HCE3 1301 aa18.91■□□□□ 0.62
HMGA1-206ENST00000478214 TCRBV5S4A2TA0A5A2 114 aa18.9■□□□□ 0.62
HMGA1-206ENST00000478214 MANSC4A6NHS7 340 aaPredicted RBP18.9■□□□□ 0.62
HMGA1-206ENST00000478214 MAP3K10Q02779 954 aa18.9■□□□□ 0.62
HMGA1-206ENST00000478214 OTUD5Q96G74 571 aa18.9■□□□□ 0.62
HMGA1-206ENST00000478214 RWDD1Q9H446 243 aaPredicted RBP18.9■□□□□ 0.62
HMGA1-206ENST00000478214 SAGE1Q9NXZ1 904 aa18.9■□□□□ 0.62
HMGA1-206ENST00000478214 FLT1P17948 1338 aa18.9■□□□□ 0.62
HMGA1-206ENST00000478214 DOCK2Q92608 1830 aa18.9■□□□□ 0.62
HMGA1-206ENST00000478214 SPDYE5A6NIY4 337 aa18.89■□□□□ 0.61
HMGA1-206ENST00000478214 FAM196BA6NMK8 535 aa18.89■□□□□ 0.61
HMGA1-206ENST00000478214 PHF20L1A8MW92 1017 aa18.89■□□□□ 0.61
HMGA1-206ENST00000478214 IGHDP01880 384 aa18.89■□□□□ 0.61
HMGA1-206ENST00000478214 SLFNL1Q499Z3 407 aa18.89■□□□□ 0.61
HMGA1-206ENST00000478214 ERO1BQ86YB8 467 aa18.89■□□□□ 0.61
HMGA1-206ENST00000478214 RIOK1Q9BRS2 568 aaKnown RBP18.89■□□□□ 0.61
HMGA1-206ENST00000478214 AK9Q5TCS8 1911 aa18.89■□□□□ 0.61
HMGA1-206ENST00000478214 COL2A1P02458 1487 aaPredicted RBP18.89■□□□□ 0.61
HMGA1-206ENST00000478214 MAGEB6P1A0A0J9YX57 407 aa18.88■□□□□ 0.61
HMGA1-206ENST00000478214 CHGBP05060 677 aa18.88■□□□□ 0.61
HMGA1-206ENST00000478214 ADD2P35612 726 aa18.88■□□□□ 0.61
HMGA1-206ENST00000478214 INHBEP58166 350 aa18.88■□□□□ 0.61
HMGA1-206ENST00000478214 CERS3Q8IU89 383 aa18.88■□□□□ 0.61
HMGA1-206ENST00000478214 ZBTB47Q9UFB7 747 aaPredicted RBP18.88■□□□□ 0.61
HMGA1-206ENST00000478214 TBC1D12O60347 775 aa18.87■□□□□ 0.61
HMGA1-206ENST00000478214 NOL9Q5SY16 702 aaKnown RBP18.87■□□□□ 0.61
HMGA1-206ENST00000478214 TTC41PQ6P2S7 1318 aa18.87■□□□□ 0.61
HMGA1-206ENST00000478214 MS4A4AQ96JQ5 239 aa18.87■□□□□ 0.61
HMGA1-206ENST00000478214 DDX24Q9GZR7 859 aaKnown RBP eCLIP18.87■□□□□ 0.613e-7■□□□□ 8.6
HMGA1-206ENST00000478214 SAP30BPQ9UHR5 308 aaKnown RBP18.87■□□□□ 0.61
HMGA1-206ENST00000478214 PALD1Q9ULE6 856 aa18.87■□□□□ 0.61
HMGA1-206ENST00000478214 SALL3Q9BXA9 1300 aa18.86■□□□□ 0.61
HMGA1-206ENST00000478214 IGF2BP3O00425 579 aaKnown RBP eCLIP18.86■□□□□ 0.611e-14■■■□□ 14.7
HMGA1-206ENST00000478214 USP5P45974 858 aa18.86■□□□□ 0.61
HMGA1-206ENST00000478214 PPIL2Q13356 520 aa18.86■□□□□ 0.61
HMGA1-206ENST00000478214 IFNL1Q8IU54 200 aa18.86■□□□□ 0.61
HMGA1-206ENST00000478214 SMC5Q8IY18 1101 aa18.86■□□□□ 0.61
HMGA1-206ENST00000478214 PI4K2BQ8TCG2 481 aa18.86■□□□□ 0.61
HMGA1-206ENST00000478214 DHX36Q9H2U1 1008 aaKnown RBP18.86■□□□□ 0.61
HMGA1-206ENST00000478214 XPO5Q9HAV4 1204 aaKnown RBP eCLIP18.86■□□□□ 0.61
HMGA1-206ENST00000478214 PI4KBQ9UBF8 816 aa18.86■□□□□ 0.61
HMGA1-206ENST00000478214 TESPA1A2RU30 521 aaPredicted RBP18.85■□□□□ 0.61
HMGA1-206ENST00000478214 IRF6O14896 467 aa18.85■□□□□ 0.61
HMGA1-206ENST00000478214 TBC1D8O95759 1140 aa18.85■□□□□ 0.61
HMGA1-206ENST00000478214 MX1P20591 662 aa18.85■□□□□ 0.61
HMGA1-206ENST00000478214 GTF2A2P52657 109 aa18.85■□□□□ 0.61
HMGA1-206ENST00000478214 PPATQ06203 517 aa18.85■□□□□ 0.61
HMGA1-206ENST00000478214 SLC4A8Q2Y0W8 1093 aa18.85■□□□□ 0.61
HMGA1-206ENST00000478214 LCORLQ8N3X6 602 aa18.85■□□□□ 0.61
HMGA1-206ENST00000478214 BRI3BPQ8WY22 251 aa18.85■□□□□ 0.61
HMGA1-206ENST00000478214 PTPN18Q99952 460 aa18.85■□□□□ 0.61
HMGA1-206ENST00000478214 CCL15-CCL14A0A0B4J2E2 113 aa18.84■□□□□ 0.61
HMGA1-206ENST00000478214 ERC2O15083 957 aa18.84■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 62.3 ms