RNA–Protein interactions for RNA: ENST00000475146.1

CPNE1-223, Transcript of copine 1, human

TSL 3

Gene CPNE1, Length 627 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPNE1-223	ENST00000475146	ANTXR1	Q9H6X2	564 aa		29.28	■■■□□ 2.28
CPNE1-223	ENST00000475146	AATF	Q9NY61	560 aa	Known RBP eCLIP	29.28	■■■□□ 2.28
CPNE1-223	ENST00000475146	TEX11	Q8IYF3	940 aa		29.27	■■■□□ 2.28
CPNE1-223	ENST00000475146	CNKSR2	Q8WXI2	1034 aa		29.27	■■■□□ 2.28
CPNE1-223	ENST00000475146	PCDHB15	Q9Y5E8	787 aa		29.27	■■■□□ 2.28
CPNE1-223	ENST00000475146	DOCK2	Q92608	1830 aa		29.27	■■■□□ 2.28
CPNE1-223	ENST00000475146	SMARCA5	O60264	1052 aa	Predicted RBP	29.26	■■■□□ 2.27
CPNE1-223	ENST00000475146	ADGRA1	Q86SQ6	560 aa		29.26	■■■□□ 2.27
CPNE1-223	ENST00000475146	SH3RF3	Q8TEJ3	882 aa	Predicted RBP	29.26	■■■□□ 2.27
CPNE1-223	ENST00000475146	ZKSCAN4	Q969J2	545 aa	Predicted RBP	29.26	■■■□□ 2.27
CPNE1-223	ENST00000475146	OTUD5	Q96G74	571 aa		29.26	■■■□□ 2.27
CPNE1-223	ENST00000475146	DNAJC2	Q99543	621 aa	Known RBP	29.26	■■■□□ 2.27
CPNE1-223	ENST00000475146	SNCAIP	Q9Y6H5	919 aa		29.26	■■■□□ 2.27
CPNE1-223	ENST00000475146	PLCG2	P16885	1265 aa		29.25	■■■□□ 2.27
CPNE1-223	ENST00000475146	CYP7A1	P22680	504 aa		29.25	■■■□□ 2.27
CPNE1-223	ENST00000475146	MAP3K12	Q12852	859 aa		29.25	■■■□□ 2.27
CPNE1-223	ENST00000475146	SH3BP5L	Q7L8J4	393 aa		29.25	■■■□□ 2.27
CPNE1-223	ENST00000475146	PPIL4	Q8WUA2	492 aa	Known RBP eCLIP	29.25	■■■□□ 2.27
CPNE1-223	ENST00000475146	DCTPP1	Q9H773	170 aa		29.25	■■■□□ 2.27
CPNE1-223	ENST00000475146	DDTL	A6NHG4	134 aa	Predicted RBP	29.24	■■■□□ 2.27
CPNE1-223	ENST00000475146	INPP5B	P32019	993 aa		29.24	■■■□□ 2.27
CPNE1-223	ENST00000475146	INHBE	P58166	350 aa		29.24	■■■□□ 2.27
CPNE1-223	ENST00000475146	TTF1	Q15361	905 aa	Predicted RBP	29.24	■■■□□ 2.27
CPNE1-223	ENST00000475146	MAGEB6	Q8N7X4	407 aa		29.24	■■■□□ 2.27
CPNE1-223	ENST00000475146	SPDYE5	A6NIY4	337 aa		29.23	■■■□□ 2.27
CPNE1-223	ENST00000475146	NPM3	O75607	178 aa	Known RBP	29.23	■■■□□ 2.27
CPNE1-223	ENST00000475146	ATRNL1	Q5VV63	1379 aa		29.23	■■■□□ 2.27
CPNE1-223	ENST00000475146	TBC1D8	O95759	1140 aa		29.22	■■■□□ 2.27
CPNE1-223	ENST00000475146	PPP4C	P60510	307 aa		29.22	■■■□□ 2.27
CPNE1-223	ENST00000475146	IFFO2	Q5TF58	517 aa		29.22	■■■□□ 2.27
CPNE1-223	ENST00000475146	ERO1B	Q86YB8	467 aa		29.22	■■■□□ 2.27
CPNE1-223	ENST00000475146	OSBPL5	Q9H0X9	879 aa	Predicted RBP	29.22	■■■□□ 2.27
CPNE1-223	ENST00000475146	CASP8AP2	Q9UKL3	1982 aa		29.21	■■■□□ 2.27
CPNE1-223	ENST00000475146	GOLIM4	O00461	696 aa		29.21	■■■□□ 2.27
CPNE1-223	ENST00000475146	IFNL1	Q8IU54	200 aa		29.21	■■■□□ 2.27
CPNE1-223	ENST00000475146	BOLA2	Q9H3K6	86 aa		29.21	■■■□□ 2.27
CPNE1-223	ENST00000475146	ZNF112	Q9UJU3	913 aa		29.21	■■■□□ 2.27
CPNE1-223	ENST00000475146	ALDH1A1	P00352	501 aa		29.2	■■■□□ 2.26
CPNE1-223	ENST00000475146	LAMB1	P07942	1786 aa		29.2	■■■□□ 2.26
CPNE1-223	ENST00000475146	IGF2BP3	O00425	579 aa	Known RBP eCLIP	29.19	■■■□□ 2.26
CPNE1-223	ENST00000475146	ATP5J	P18859	108 aa		29.19	■■■□□ 2.26
CPNE1-223	ENST00000475146	DYNLL1	P63167	89 aa	Known RBP	29.19	■■■□□ 2.26
CPNE1-223	ENST00000475146	MIGA1	Q8NAN2	632 aa		29.19	■■■□□ 2.26
CPNE1-223	ENST00000475146	TGFBRAP1	Q8WUH2	860 aa		29.19	■■■□□ 2.26
CPNE1-223	ENST00000475146	COL2A1	P02458	1487 aa	Predicted RBP	29.18	■■■□□ 2.26
CPNE1-223	ENST00000475146	GTF2A2	P52657	109 aa		29.18	■■■□□ 2.26
CPNE1-223	ENST00000475146	OTUD7B	Q6GQQ9	843 aa		29.18	■■■□□ 2.26
CPNE1-223	ENST00000475146	MAPKAPK5	Q8IW41	473 aa		29.18	■■■□□ 2.26
CPNE1-223	ENST00000475146	EDC3	Q96F86	508 aa	Known RBP	29.18	■■■□□ 2.26
CPNE1-223	ENST00000475146	CCL15-CCL14	A0A0B4J2E2	113 aa		29.17	■■■□□ 2.26
CPNE1-223	ENST00000475146	SLURP2	P0DP57	97 aa		29.17	■■■□□ 2.26
CPNE1-223	ENST00000475146	CCL15	Q16663	113 aa		29.17	■■■□□ 2.26
CPNE1-223	ENST00000475146	NOL9	Q5SY16	702 aa	Known RBP	29.17	■■■□□ 2.26
CPNE1-223	ENST00000475146	TMED8	Q6PL24	325 aa	Predicted RBP	29.17	■■■□□ 2.26
CPNE1-223	ENST00000475146	MS4A4A	Q96JQ5	239 aa		29.17	■■■□□ 2.26
CPNE1-223	ENST00000475146	PAG1	Q9NWQ8	432 aa		29.17	■■■□□ 2.26
CPNE1-223	ENST00000475146	PPIL2	Q13356	520 aa		29.16	■■■□□ 2.26
CPNE1-223	ENST00000475146	CERS3	Q8IU89	383 aa		29.16	■■■□□ 2.26
CPNE1-223	ENST00000475146	HAUS7	Q99871	368 aa		29.16	■■■□□ 2.26
CPNE1-223	ENST00000475146	FLT1	P17948	1338 aa		29.16	■■■□□ 2.26
CPNE1-223	ENST00000475146	TESPA1	A2RU30	521 aa	Predicted RBP	29.15	■■■□□ 2.26
CPNE1-223	ENST00000475146	PHF20L1	A8MW92	1017 aa		29.15	■■■□□ 2.26
CPNE1-223	ENST00000475146	IRF6	O14896	467 aa		29.15	■■■□□ 2.26
CPNE1-223	ENST00000475146	PDE6A	P16499	860 aa		29.15	■■■□□ 2.26
CPNE1-223	ENST00000475146	PPAT	Q06203	517 aa		29.15	■■■□□ 2.26
CPNE1-223	ENST00000475146	SLC9C2	Q5TAH2	1124 aa		29.15	■■■□□ 2.26
CPNE1-223	ENST00000475146	BRI3BP	Q8WY22	251 aa		29.15	■■■□□ 2.26
CPNE1-223	ENST00000475146	GPATCH3	Q96I76	525 aa		29.15	■■■□□ 2.26
CPNE1-223	ENST00000475146	XPO5	Q9HAV4	1204 aa	Known RBP eCLIP	29.15	■■■□□ 2.26
CPNE1-223	ENST00000475146	FAM196B	A6NMK8	535 aa		29.14	■■■□□ 2.26
CPNE1-223	ENST00000475146	MAP3K10	Q02779	954 aa		29.14	■■■□□ 2.26
CPNE1-223	ENST00000475146	SNAPC2	Q13487	334 aa		29.14	■■■□□ 2.26
CPNE1-223	ENST00000475146	PTPN18	Q99952	460 aa		29.14	■■■□□ 2.26
CPNE1-223	ENST00000475146	PICK1	Q9NRD5	415 aa		29.14	■■■□□ 2.26
CPNE1-223	ENST00000475146	ECHDC1	Q9NTX5	307 aa		29.14	■■■□□ 2.26
CPNE1-223	ENST00000475146	SCYL3	Q8IZE3	742 aa		29.13	■■■□□ 2.25
CPNE1-223	ENST00000475146	CFHR5	Q9BXR6	569 aa		29.13	■■■□□ 2.25
CPNE1-223	ENST00000475146	DHX36	Q9H2U1	1008 aa	Known RBP	29.13	■■■□□ 2.25
CPNE1-223	ENST00000475146	CDK5RAP2	Q96SN8	1893 aa		29.12	■■■□□ 2.25
CPNE1-223	ENST00000475146	GPR25	O00155	361 aa		29.12	■■■□□ 2.25
CPNE1-223	ENST00000475146	TBC1D12	O60347	775 aa		29.12	■■■□□ 2.25
CPNE1-223	ENST00000475146	CETP	P11597	493 aa		29.12	■■■□□ 2.25
CPNE1-223	ENST00000475146	USP5	P45974	858 aa		29.12	■■■□□ 2.25
CPNE1-223	ENST00000475146	R3HDML	Q9H3Y0	253 aa		29.12	■■■□□ 2.25
CPNE1-223	ENST00000475146	SAP30BP	Q9UHR5	308 aa	Known RBP	29.12	■■■□□ 2.25
CPNE1-223	ENST00000475146	FOCAD	Q5VW36	1801 aa		29.11	■■■□□ 2.25
CPNE1-223	ENST00000475146	CAPN15	O75808	1086 aa		29.11	■■■□□ 2.25
CPNE1-223	ENST00000475146	DGKZ	Q13574	1117 aa		29.11	■■■□□ 2.25
CPNE1-223	ENST00000475146	ZNF296	Q8WUU4	475 aa	Predicted RBP	29.11	■■■□□ 2.25
CPNE1-223	ENST00000475146	PI4KB	Q9UBF8	816 aa		29.11	■■■□□ 2.25
CPNE1-223	ENST00000475146	ZNF532	Q9HCE3	1301 aa		29.11	■■■□□ 2.25
CPNE1-223	ENST00000475146	MAGEB6P1	A0A0J9YX57	407 aa		29.1	■■■□□ 2.25
CPNE1-223	ENST00000475146	CTNND1	O60716	968 aa	Known RBP	29.1	■■■□□ 2.25
CPNE1-223	ENST00000475146	DDX24	Q9GZR7	859 aa	Known RBP eCLIP	29.1	■■■□□ 2.25	5e-8	■■■■■ 44.3
CPNE1-223	ENST00000475146	PALD1	Q9ULE6	856 aa		29.1	■■■□□ 2.25
CPNE1-223	ENST00000475146	SUPT16H	Q9Y5B9	1047 aa	Known RBP	29.1	■■■□□ 2.25
CPNE1-223	ENST00000475146	CRHR2	Q13324	411 aa		29.09	■■■□□ 2.25
CPNE1-223	ENST00000475146	AAMP	Q13685	434 aa		29.09	■■■□□ 2.25
CPNE1-223	ENST00000475146	TSHZ3	Q63HK5	1081 aa		29.09	■■■□□ 2.25
CPNE1-223	ENST00000475146	ZBTB47	Q9UFB7	747 aa	Predicted RBP	29.09	■■■□□ 2.25

Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms