RNA–Protein interactions for RNA: ENST00000472217.1

USF1-204, Transcript of upstream transcription factor 1, humanhuman

TSL 2

Gene USF1, Length 1,097 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF1-204ENST00000472217 SH3BP5LQ7L8J4 393 aa11.09□□□□□ -0.63
USF1-204ENST00000472217 FAM43AQ8N2R8 423 aa11.09□□□□□ -0.63
USF1-204ENST00000472217 SNRKQ9NRH2 765 aa11.09□□□□□ -0.63
USF1-204ENST00000472217 TLR7Q9NYK1 1049 aaKnown RBP11.09□□□□□ -0.63
USF1-204ENST00000472217 RAI14Q9P0K7 980 aa11.09□□□□□ -0.63
USF1-204ENST00000472217 HPS5Q9UPZ3 1129 aa11.09□□□□□ -0.63
USF1-204ENST00000472217 DDTLA6NHG4 134 aaPredicted RBP11.08□□□□□ -0.64
USF1-204ENST00000472217 CETPP11597 493 aa11.08□□□□□ -0.64
USF1-204ENST00000472217 MS4A1P11836 297 aa11.08□□□□□ -0.64
USF1-204ENST00000472217 PPATQ06203 517 aa11.08□□□□□ -0.64
USF1-204ENST00000472217 SNAPC2Q13487 334 aa11.08□□□□□ -0.64
USF1-204ENST00000472217 TAF1CQ15572 869 aaPredicted RBP11.08□□□□□ -0.64
USF1-204ENST00000472217 CCDC158Q5M9N0 1113 aa11.08□□□□□ -0.64
USF1-204ENST00000472217 NOL9Q5SY16 702 aaKnown RBP11.08□□□□□ -0.64
USF1-204ENST00000472217 EAF2Q96CJ1 260 aaPredicted RBP11.08□□□□□ -0.64
USF1-204ENST00000472217 LRP2BPQ9P2M1 347 aa11.08□□□□□ -0.64
USF1-204ENST00000472217 DBNLQ9UJU6 430 aaKnown RBP11.08□□□□□ -0.64
USF1-204ENST00000472217 DOCK1Q14185 1865 aa11.07□□□□□ -0.64
USF1-204ENST00000472217 LDHCP07864 332 aa11.07□□□□□ -0.64
USF1-204ENST00000472217 SLURP2P0DP57 97 aa11.07□□□□□ -0.64
USF1-204ENST00000472217 HOXD11P31277 338 aaPredicted RBP11.07□□□□□ -0.64
USF1-204ENST00000472217 SOX10P56693 466 aa11.07□□□□□ -0.64
USF1-204ENST00000472217 FBXO46Q6PJ61 603 aaPredicted RBP11.07□□□□□ -0.64
USF1-204ENST00000472217 OTOP1Q7RTM1 612 aa11.07□□□□□ -0.64
USF1-204ENST00000472217 ZSCAN29Q8IWY8 852 aaPredicted RBP11.07□□□□□ -0.64
USF1-204ENST00000472217 GOLGA6L2Q8N9W4 650 aaPredicted RBP11.07□□□□□ -0.64
USF1-204ENST00000472217 CD99L2Q8TCZ2 262 aa11.07□□□□□ -0.64
USF1-204ENST00000472217 ZNF512BQ96KM6 892 aaPredicted RBP11.07□□□□□ -0.64
USF1-204ENST00000472217 CCDC8Q9H0W5 538 aaPredicted RBP11.07□□□□□ -0.64
USF1-204ENST00000472217 ZFYVE28Q9HCC9 887 aa11.07□□□□□ -0.64
USF1-204ENST00000472217 RCAN3Q9UKA8 241 aa11.07□□□□□ -0.64
USF1-204ENST00000472217 EXOC6BQ9Y2D4 811 aa11.07□□□□□ -0.64
USF1-204ENST00000472217 COG6Q9Y2V7 657 aa11.07□□□□□ -0.64
USF1-204ENST00000472217 TRIM17Q9Y577 477 aa11.07□□□□□ -0.64
USF1-204ENST00000472217 COL2A1P02458 1487 aaPredicted RBP11.06□□□□□ -0.64
USF1-204ENST00000472217 MYO5AQ9Y4I1 1855 aaKnown RBP11.06□□□□□ -0.64
USF1-204ENST00000472217 PHF20L1A8MW92 1017 aa11.06□□□□□ -0.64
USF1-204ENST00000472217 BTBD19C9JJ37 291 aa11.06□□□□□ -0.64
USF1-204ENST00000472217 CYP2E1P05181 493 aaPredicted RBP11.06□□□□□ -0.64
USF1-204ENST00000472217 ZAP70P43403 619 aa11.06□□□□□ -0.64
USF1-204ENST00000472217 CAP1Q01518 475 aa11.06□□□□□ -0.64
USF1-204ENST00000472217 SP3Q02447 781 aa11.06□□□□□ -0.64
USF1-204ENST00000472217 MAP3K10Q02779 954 aa11.06□□□□□ -0.64
USF1-204ENST00000472217 MLLT1Q03111 559 aaPredicted RBP11.06□□□□□ -0.64
USF1-204ENST00000472217 ERO1AQ96HE7 468 aa11.06□□□□□ -0.64
USF1-204ENST00000472217 ZCCHC17Q9NP64 241 aaKnown RBP11.06□□□□□ -0.64
USF1-204ENST00000472217 DDX19BQ9UMR2 479 aa11.06□□□□□ -0.64
USF1-204ENST00000472217 KCNH4Q9UQ05 1017 aa11.06□□□□□ -0.64
USF1-204ENST00000472217 ZSWIM8A7E2V4 1837 aa11.05□□□□□ -0.64
USF1-204ENST00000472217 MAP4K4O95819 1239 aaPredicted RBP11.05□□□□□ -0.64
USF1-204ENST00000472217 NAA16Q6N069 864 aaPredicted RBP11.05□□□□□ -0.64
USF1-204ENST00000472217 ADGRA1Q86SQ6 560 aa11.05□□□□□ -0.64
USF1-204ENST00000472217 ERC1Q8IUD2 1116 aa11.05□□□□□ -0.64
USF1-204ENST00000472217 TEX11Q8IYF3 940 aa11.05□□□□□ -0.64
USF1-204ENST00000472217 SCYL3Q8IZE3 742 aa11.05□□□□□ -0.64
USF1-204ENST00000472217 SH3RF3Q8TEJ3 882 aaPredicted RBP11.05□□□□□ -0.64
USF1-204ENST00000472217 CDK5RAP2Q96SN8 1893 aa11.05□□□□□ -0.64
USF1-204ENST00000472217 PIH1D3Q9NQM4 214 aaKnown RBP11.05□□□□□ -0.64
USF1-204ENST00000472217 ZBTB40Q9NUA8 1239 aa11.05□□□□□ -0.64
USF1-204ENST00000472217 SIPA1L1O43166 1804 aa11.05□□□□□ -0.64
USF1-204ENST00000472217 FOCADQ5VW36 1801 aa11.05□□□□□ -0.64
USF1-204ENST00000472217 PHIPQ8WWQ0 1821 aa11.05□□□□□ -0.64
USF1-204ENST00000472217 FAM196BA6NMK8 535 aa11.04□□□□□ -0.64
USF1-204ENST00000472217 TLR2O60603 784 aa11.04□□□□□ -0.64
USF1-204ENST00000472217 CTNND1O60716 968 aaKnown RBP11.04□□□□□ -0.64
USF1-204ENST00000472217 PTPRAP18433 802 aa11.04□□□□□ -0.64
USF1-204ENST00000472217 MOGSQ13724 837 aa11.04□□□□□ -0.64
USF1-204ENST00000472217 HSP90AB4PQ58FF6 505 aa11.04□□□□□ -0.64
USF1-204ENST00000472217 ANKRD23Q86SG2 305 aa11.04□□□□□ -0.64
USF1-204ENST00000472217 AACSQ86V21 672 aa11.04□□□□□ -0.64
USF1-204ENST00000472217 SIRT2Q8IXJ6 389 aa11.04□□□□□ -0.64
USF1-204ENST00000472217 RPAP2Q8IXW5 612 aaPredicted RBP11.04□□□□□ -0.64
USF1-204ENST00000472217 RHPN1Q8TCX5 695 aa11.04□□□□□ -0.64
USF1-204ENST00000472217 NOL10Q9BSC4 688 aaKnown RBP11.04□□□□□ -0.64
USF1-204ENST00000472217 OSBPL5Q9H0X9 879 aaPredicted RBP11.04□□□□□ -0.64
USF1-204ENST00000472217 EFCC1Q9HA90 598 aa11.04□□□□□ -0.64
USF1-204ENST00000472217 IL1RAPL2Q9NP60 686 aa11.04□□□□□ -0.64
USF1-204ENST00000472217 PICK1Q9NRD5 415 aa11.04□□□□□ -0.64
USF1-204ENST00000472217 AATFQ9NY61 560 aaKnown RBP eCLIP11.04□□□□□ -0.64
USF1-204ENST00000472217 ATAD5Q96QE3 1844 aa11.03□□□□□ -0.64
USF1-204ENST00000472217 PDHXO00330 501 aa11.03□□□□□ -0.64
USF1-204ENST00000472217 TBC1D12O60347 775 aa11.03□□□□□ -0.64
USF1-204ENST00000472217 BAG3O95817 575 aa11.03□□□□□ -0.64
USF1-204ENST00000472217 C20orf194Q5TEA3 1177 aa11.03□□□□□ -0.64
USF1-204ENST00000472217 XPO5Q9HAV4 1204 aaKnown RBP eCLIP11.03□□□□□ -0.64
USF1-204ENST00000472217 FRMD4AQ9P2Q2 1039 aaPredicted RBP11.03□□□□□ -0.64
USF1-204ENST00000472217 PTPN22Q9Y2R2 807 aa11.03□□□□□ -0.64
USF1-204ENST00000472217 NDUFB9Q9Y6M9 179 aa11.03□□□□□ -0.64
USF1-204ENST00000472217 ZHX2Q9Y6X8 837 aa11.03□□□□□ -0.64
USF1-204ENST00000472217 PTPRFP10586 1907 aa11.03□□□□□ -0.64
USF1-204ENST00000472217 APBB1O00213 710 aa11.02□□□□□ -0.65
USF1-204ENST00000472217 CXCL11O14625 94 aa11.02□□□□□ -0.65
USF1-204ENST00000472217 IGSF3O75054 1194 aa11.02□□□□□ -0.65
USF1-204ENST00000472217 HMMRO75330 724 aa11.02□□□□□ -0.65
USF1-204ENST00000472217 IDH1O75874 414 aaKnown RBP11.02□□□□□ -0.65
USF1-204ENST00000472217 PLCG2P16885 1265 aa11.02□□□□□ -0.65
USF1-204ENST00000472217 PPP4CP60510 307 aa11.02□□□□□ -0.65
USF1-204ENST00000472217 GPAT2Q6NUI2 795 aa11.02□□□□□ -0.65
USF1-204ENST00000472217 CCDC84Q86UT8 332 aaPredicted RBP11.02□□□□□ -0.65
USF1-204ENST00000472217 TGFBRAP1Q8WUH2 860 aa11.02□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms