RNA–Protein interactions for RNA: ENST00000467533.5

HDAC3-203, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 663 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-203ENST00000467533 FAM110CQ1W6H9 321 aa13.02□□□□□ -0.33
HDAC3-203ENST00000467533 CCDC57Q2TAC2 916 aa13.02□□□□□ -0.33
HDAC3-203ENST00000467533 TJAP1Q5JTD0 557 aa13.02□□□□□ -0.33
HDAC3-203ENST00000467533 APOBEC3HQ6NTF7 200 aaKnown RBP13.02□□□□□ -0.33
HDAC3-203ENST00000467533 PICK1Q9NRD5 415 aa13.02□□□□□ -0.33
HDAC3-203ENST00000467533 ZHX2Q9Y6X8 837 aa13.02□□□□□ -0.33
HDAC3-203ENST00000467533 LAMA2P24043 3122 aaKnown RBP13.02□□□□□ -0.33
HDAC3-203ENST00000467533 TTC28Q96AY4 2481 aa13.02□□□□□ -0.33
HDAC3-203ENST00000467533 CALD1Q05682 793 aaKnown RBP13.01□□□□□ -0.33
HDAC3-203ENST00000467533 WDR43Q15061 677 aaKnown RBP eCLIP13.01□□□□□ -0.33
HDAC3-203ENST00000467533 SCYL3Q8IZE3 742 aa13.01□□□□□ -0.33
HDAC3-203ENST00000467533 SEMA6BQ9H3T3 888 aa13.01□□□□□ -0.33
HDAC3-203ENST00000467533 PNMA3Q9UL41 463 aa13.01□□□□□ -0.33
HDAC3-203ENST00000467533 LOC285556D6RIA3 1793 aa13□□□□□ -0.33
HDAC3-203ENST00000467533 COL6A1P12109 1028 aa13□□□□□ -0.33
HDAC3-203ENST00000467533 PRKAR2AP13861 404 aaKnown RBP13□□□□□ -0.33
HDAC3-203ENST00000467533 FOXO4P98177 505 aa13□□□□□ -0.33
HDAC3-203ENST00000467533 LMBR1LQ6UX01 489 aa13□□□□□ -0.33
HDAC3-203ENST00000467533 G2E3Q7L622 706 aa13□□□□□ -0.33
HDAC3-203ENST00000467533 TRIB2Q92519 343 aa13□□□□□ -0.33
HDAC3-203ENST00000467533 AGTPBP1Q9UPW5 1226 aa13□□□□□ -0.33
HDAC3-203ENST00000467533 TSPYL6Q8N831 410 aa12.99□□□□□ -0.33
HDAC3-203ENST00000467533 LINS1Q8NG48 757 aa12.99□□□□□ -0.33
HDAC3-203ENST00000467533 PRKAG2Q9UGJ0 569 aa12.99□□□□□ -0.33
HDAC3-203ENST00000467533 AFG3L2Q9Y4W6 797 aa12.99□□□□□ -0.33
HDAC3-203ENST00000467533 TRIM75PA6NK02 468 aa12.98□□□□□ -0.33
HDAC3-203ENST00000467533 PTPRAP18433 802 aa12.98□□□□□ -0.33
HDAC3-203ENST00000467533 FKBP5Q13451 457 aaPredicted RBP12.98□□□□□ -0.33
HDAC3-203ENST00000467533 CAVIN4Q5BKX8 364 aa12.98□□□□□ -0.33
HDAC3-203ENST00000467533 HHIPL2Q6UWX4 724 aa12.98□□□□□ -0.33
HDAC3-203ENST00000467533 DNAAF4Q8WXU2 420 aa12.98□□□□□ -0.33
HDAC3-203ENST00000467533 MRIQ9BWK5 157 aa12.98□□□□□ -0.33
HDAC3-203ENST00000467533 TTYH1Q9H313 450 aaPredicted RBP12.98□□□□□ -0.33
HDAC3-203ENST00000467533 CYP2B6P20813 491 aa12.97□□□□□ -0.33
HDAC3-203ENST00000467533 HOXD11P31277 338 aaPredicted RBP12.97□□□□□ -0.33
HDAC3-203ENST00000467533 NFIAQ12857 509 aa12.97□□□□□ -0.33
HDAC3-203ENST00000467533 FLIIQ13045 1269 aa12.97□□□□□ -0.33
HDAC3-203ENST00000467533 TREML2Q5T2D2 321 aa12.97□□□□□ -0.33
HDAC3-203ENST00000467533 MAP3K21Q5TCX8 1036 aa12.97□□□□□ -0.33
HDAC3-203ENST00000467533 SUGT1Q9Y2Z0 365 aa12.97□□□□□ -0.33
HDAC3-203ENST00000467533 SLC4A2P04920 1241 aa12.96□□□□□ -0.33
HDAC3-203ENST00000467533 GCLCP48506 637 aaPredicted RBP12.96□□□□□ -0.33
HDAC3-203ENST00000467533 MAP3K12Q12852 859 aa12.96□□□□□ -0.33
HDAC3-203ENST00000467533 SHHQ15465 462 aa12.96□□□□□ -0.33
HDAC3-203ENST00000467533 EPHA10Q5JZY3 1008 aa12.96□□□□□ -0.33
HDAC3-203ENST00000467533 CDC42EP5Q6NZY7 148 aa12.96□□□□□ -0.33
HDAC3-203ENST00000467533 FBXO33Q7Z6M2 555 aa12.96□□□□□ -0.33
HDAC3-203ENST00000467533 GJD2Q9UKL4 321 aa12.96□□□□□ -0.33
HDAC3-203ENST00000467533 LRRFIP2Q9Y608 721 aaKnown RBP12.96□□□□□ -0.33
HDAC3-203ENST00000467533 ATAD5Q96QE3 1844 aa12.96□□□□□ -0.33
HDAC3-203ENST00000467533 ATRNL1Q5VV63 1379 aa12.95□□□□□ -0.34
HDAC3-203ENST00000467533 PHF20L1A8MW92 1017 aa12.95□□□□□ -0.34
HDAC3-203ENST00000467533 ZKSCAN1P17029 563 aaPredicted RBP12.95□□□□□ -0.34
HDAC3-203ENST00000467533 SMAD3P84022 425 aaKnown RBP12.95□□□□□ -0.34
HDAC3-203ENST00000467533 C9orf50Q5SZB4 431 aa12.95□□□□□ -0.34
HDAC3-203ENST00000467533 CCDC84Q86UT8 332 aaPredicted RBP12.95□□□□□ -0.34
HDAC3-203ENST00000467533 USP38Q8NB14 1042 aa12.95□□□□□ -0.34
HDAC3-203ENST00000467533 PUS3Q9BZE2 481 aaKnown RBP12.95□□□□□ -0.34
HDAC3-203ENST00000467533 FRMD4AQ9P2Q2 1039 aaPredicted RBP12.95□□□□□ -0.34
HDAC3-203ENST00000467533 FAM198AQ9UFP1 575 aa12.95□□□□□ -0.34
HDAC3-203ENST00000467533 DAGLAQ9Y4D2 1042 aa12.95□□□□□ -0.34
HDAC3-203ENST00000467533 MROH5Q6ZUA9 1318 aa12.94□□□□□ -0.34
HDAC3-203ENST00000467533 MUC3AQ02505 3323 aa12.94□□□□□ -0.34
HDAC3-203ENST00000467533 CCND3P30281 292 aaPredicted RBP12.94□□□□□ -0.34
HDAC3-203ENST00000467533 ZEB1P37275 1124 aaPredicted RBP12.94□□□□□ -0.34
HDAC3-203ENST00000467533 ATN1P54259 1190 aaPredicted RBP12.94□□□□□ -0.34
HDAC3-203ENST00000467533 RALBP1Q15311 655 aa12.94□□□□□ -0.34
HDAC3-203ENST00000467533 ZSCAN29Q8IWY8 852 aaPredicted RBP12.94□□□□□ -0.34
HDAC3-203ENST00000467533 SOCS4Q8WXH5 440 aa12.94□□□□□ -0.34
HDAC3-203ENST00000467533 SENP6Q9GZR1 1112 aaPredicted RBP12.94□□□□□ -0.34
HDAC3-203ENST00000467533 ADAMTS8Q9UP79 889 aa12.94□□□□□ -0.34
HDAC3-203ENST00000467533 CACNA1FO60840 1977 aa12.93□□□□□ -0.34
HDAC3-203ENST00000467533 CACNB2Q08289 660 aaPredicted RBP12.93□□□□□ -0.34
HDAC3-203ENST00000467533 PABPC4Q13310 644 aaKnown RBP eCLIP12.93□□□□□ -0.34
HDAC3-203ENST00000467533 DIXDC1Q155Q3 683 aa12.93□□□□□ -0.34
HDAC3-203ENST00000467533 TWISTNBQ3B726 338 aaPredicted RBP12.93□□□□□ -0.34
HDAC3-203ENST00000467533 LHX8Q68G74 356 aa12.93□□□□□ -0.34
HDAC3-203ENST00000467533 ZFPM1Q8IX07 1006 aa12.93□□□□□ -0.34
HDAC3-203ENST00000467533 TRMT44Q8IYL2 757 aaKnown RBP12.93□□□□□ -0.34
HDAC3-203ENST00000467533 PROCA1Q8NCQ7 364 aaPredicted RBP12.93□□□□□ -0.34
HDAC3-203ENST00000467533 TSR2Q969E8 191 aaKnown RBP12.93□□□□□ -0.34
HDAC3-203ENST00000467533 NUDT12Q9BQG2 462 aa12.93□□□□□ -0.34
HDAC3-203ENST00000467533 USP40Q9NVE5 1235 aa12.93□□□□□ -0.34
HDAC3-203ENST00000467533 CTNND1O60716 968 aaKnown RBP12.92□□□□□ -0.34
HDAC3-203ENST00000467533 RTP1P59025 263 aa12.92□□□□□ -0.34
HDAC3-203ENST00000467533 PDE3AQ14432 1141 aa12.92□□□□□ -0.34
HDAC3-203ENST00000467533 METTL24Q5JXM2 366 aa12.92□□□□□ -0.34
HDAC3-203ENST00000467533 DNAH12Q6ZR08 3092 aa12.92□□□□□ -0.34
HDAC3-203ENST00000467533 CDH23Q9H251 3354 aa12.92□□□□□ -0.34
HDAC3-203ENST00000467533 PRDM5Q9NQX1 630 aaPredicted RBP12.92□□□□□ -0.34
HDAC3-203ENST00000467533 ATP11BQ9Y2G3 1177 aa12.92□□□□□ -0.34
HDAC3-203ENST00000467533 MYBBP1AQ9BQG0 1328 aaKnown RBP12.91□□□□□ -0.34
HDAC3-203ENST00000467533 APAF1O14727 1248 aa12.91□□□□□ -0.34
HDAC3-203ENST00000467533 XRCC5P13010 732 aaKnown RBP12.91□□□□□ -0.34
HDAC3-203ENST00000467533 RGS3P49796 1198 aa12.91□□□□□ -0.34
HDAC3-203ENST00000467533 ADAMTS19Q8TE59 1207 aa12.91□□□□□ -0.34
HDAC3-203ENST00000467533 ASCC2Q9H1I8 757 aaPredicted RBP12.91□□□□□ -0.34
HDAC3-203ENST00000467533 SPINK5Q9NQ38 1064 aaPredicted RBP12.91□□□□□ -0.34
HDAC3-203ENST00000467533 RLFQ13129 1914 aa12.9□□□□□ -0.34
HDAC3-203ENST00000467533 MYH2Q9UKX2 1941 aa12.9□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms