RNA–Protein interactions for RNA: ENST00000399494.5

HMGB1-205, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 1,282 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-205ENST00000399494 ZKSCAN2Q63HK3 967 aa35.26■■■■□ 3.24
HMGB1-205ENST00000399494 YTHDC1Q96MU7 727 aaKnown RBP35.26■■■■□ 3.24
HMGB1-205ENST00000399494 ABCF2Q9UG63 623 aa35.26■■■■□ 3.24
HMGB1-205ENST00000399494 PDS5AQ29RF7 1337 aaKnown RBP35.26■■■■□ 3.23
HMGB1-205ENST00000399494 TRIM27P14373 513 aa35.25■■■■□ 3.23
HMGB1-205ENST00000399494 MYH2Q9UKX2 1941 aa35.25■■■■□ 3.23
HMGB1-205ENST00000399494 OSBPP22059 807 aa35.24■■■■□ 3.23
HMGB1-205ENST00000399494 HOXD10P28358 340 aa35.24■■■■□ 3.23
HMGB1-205ENST00000399494 TFCP2Q12800 502 aa35.24■■■■□ 3.23
HMGB1-205ENST00000399494 XAGE2Q96GT9 111 aa35.24■■■■□ 3.23
HMGB1-205ENST00000399494 ZHX2Q9Y6X8 837 aa35.24■■■■□ 3.23
HMGB1-205ENST00000399494 A0A1B0GUL7 405 aa35.23■■■■□ 3.23
HMGB1-205ENST00000399494 FMNL1O95466 1100 aaPredicted RBP35.23■■■■□ 3.23
HMGB1-205ENST00000399494 PTPRAP18433 802 aa35.23■■■■□ 3.23
HMGB1-205ENST00000399494 SPTY2D1Q68D10 685 aaPredicted RBP35.23■■■■□ 3.23
HMGB1-205ENST00000399494 DZIP1Q86YF9 867 aaKnown RBP35.23■■■■□ 3.23
HMGB1-205ENST00000399494 SLF2Q8IX21 1173 aa35.23■■■■□ 3.23
HMGB1-205ENST00000399494 SCYL3Q8IZE3 742 aa35.23■■■■□ 3.23
HMGB1-205ENST00000399494 AKAP2Q9Y2D5 859 aa35.23■■■■□ 3.23
HMGB1-205ENST00000399494 RFX7Q2KHR2 1363 aa35.23■■■■□ 3.23
HMGB1-205ENST00000399494 DDTLA6NHG4 134 aaPredicted RBP35.22■■■■□ 3.23
HMGB1-205ENST00000399494 SRGAP3O43295 1099 aa35.22■■■■□ 3.23
HMGB1-205ENST00000399494 GNAI3P08754 354 aa35.22■■■■□ 3.23
HMGB1-205ENST00000399494 MTX1Q13505 466 aa35.22■■■■□ 3.23
HMGB1-205ENST00000399494 CLUAP1Q96AJ1 413 aa35.22■■■■□ 3.23
HMGB1-205ENST00000399494 DDX4Q9NQI0 724 aaKnown RBP35.22■■■■□ 3.23
HMGB1-205ENST00000399494 CYP2C8P10632 490 aa35.21■■■■□ 3.23
HMGB1-205ENST00000399494 BCRP11274 1271 aa35.21■■■■□ 3.23
HMGB1-205ENST00000399494 MTFR1Q15390 333 aa35.21■■■■□ 3.23
HMGB1-205ENST00000399494 ZSCAN29Q8IWY8 852 aaPredicted RBP35.21■■■■□ 3.23
HMGB1-205ENST00000399494 PARK7Q99497 189 aaKnown RBP35.21■■■■□ 3.23
HMGB1-205ENST00000399494 PICK1Q9NRD5 415 aa35.21■■■■□ 3.23
HMGB1-205ENST00000399494 AFG3L2Q9Y4W6 797 aa35.21■■■■□ 3.23
HMGB1-205ENST00000399494 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP35.21■■■■□ 3.23
HMGB1-205ENST00000399494 A0A0G2JLL6 359 aaPredicted RBP35.2■■■■□ 3.23
HMGB1-205ENST00000399494 SLURP2P0DP57 97 aa35.2■■■■□ 3.23
HMGB1-205ENST00000399494 FASTKD5Q7L8L6 764 aaKnown RBP35.2■■■■□ 3.23
HMGB1-205ENST00000399494 PRRT2Q7Z6L0 340 aaPredicted RBP35.2■■■■□ 3.23
HMGB1-205ENST00000399494 BTDP43251 543 aa35.19■■■■□ 3.22
HMGB1-205ENST00000399494 MVPQ14764 893 aaKnown RBP35.19■■■■□ 3.22
HMGB1-205ENST00000399494 RAET1EQ8TD07 263 aa35.19■■■■□ 3.22
HMGB1-205ENST00000399494 TNNQ9UQP3 1299 aa35.19■■■■□ 3.22
HMGB1-205ENST00000399494 MROH7-TTC4A0A0A0MT08 1334 aa35.18■■■■□ 3.22
HMGB1-205ENST00000399494 GRK4P32298 578 aa35.18■■■■□ 3.22
HMGB1-205ENST00000399494 MECOMQ03112 1051 aa35.18■■■■□ 3.22
HMGB1-205ENST00000399494 ZNF384Q8TF68 577 aa35.18■■■■□ 3.22
HMGB1-205ENST00000399494 DOCK2Q92608 1830 aa35.18■■■■□ 3.22
HMGB1-205ENST00000399494 MYPNQ86TC9 1320 aa35.17■■■■□ 3.22
HMGB1-205ENST00000399494 GPR75-ASB3A0A0A6YYF3 556 aa35.17■■■■□ 3.22
HMGB1-205ENST00000399494 CTNND1O60716 968 aaKnown RBP35.17■■■■□ 3.22
HMGB1-205ENST00000399494 PICALMQ13492 652 aa35.17■■■■□ 3.22
HMGB1-205ENST00000399494 ERICH6Q7L0X2 663 aa35.17■■■■□ 3.22
HMGB1-205ENST00000399494 FTSJ3Q8IY81 847 aaKnown RBP35.17■■■■□ 3.22
HMGB1-205ENST00000399494 RHBDL3P58872 404 aa35.16■■■■□ 3.22
HMGB1-205ENST00000399494 NEUROD6Q96NK8 337 aa35.16■■■■□ 3.22
HMGB1-205ENST00000399494 SHISA4Q96DD7 197 aa35.15■■■■□ 3.22
HMGB1-205ENST00000399494 HMG20BQ9P0W2 317 aa35.15■■■■□ 3.22
HMGB1-205ENST00000399494 GADL1Q6ZQY3 521 aa35.14■■■■□ 3.22
HMGB1-205ENST00000399494 RCAN3Q9UKA8 241 aa35.14■■■■□ 3.22
HMGB1-205ENST00000399494 SLC45A1Q9Y2W3 748 aa35.14■■■■□ 3.22
HMGB1-205ENST00000399494 FCGRTP55899 365 aa35.13■■■■□ 3.21
HMGB1-205ENST00000399494 PRKCZQ05513 592 aa35.13■■■■□ 3.21
HMGB1-205ENST00000399494 TBC1D12O60347 775 aa35.12■■■■□ 3.21
HMGB1-205ENST00000399494 NPM3O75607 178 aaKnown RBP35.12■■■■□ 3.21
HMGB1-205ENST00000399494 GABRQQ9UN88 632 aa35.12■■■■□ 3.21
HMGB1-205ENST00000399494 TMEM57Q8N5G2 664 aa35.11■■■■□ 3.21
HMGB1-205ENST00000399494 SPATA5Q8NB90 893 aa35.11■■■■□ 3.21
HMGB1-205ENST00000399494 NSUN4Q96CB9 384 aaKnown RBP35.11■■■■□ 3.21
HMGB1-205ENST00000399494 FRMD4AQ9P2Q2 1039 aaPredicted RBP35.11■■■■□ 3.21
HMGB1-205ENST00000399494 COLQQ9Y215 455 aaPredicted RBP35.11■■■■□ 3.21
HMGB1-205ENST00000399494 CCL5P13501 91 aa35.1■■■■□ 3.21
HMGB1-205ENST00000399494 PI16Q6UXB8 463 aa35.1■■■■□ 3.21
HMGB1-205ENST00000399494 TBC1D9Q6ZT07 1266 aa35.1■■■■□ 3.21
HMGB1-205ENST00000399494 NKX2-3Q8TAU0 364 aa35.1■■■■□ 3.21
HMGB1-205ENST00000399494 LDHCP07864 332 aa35.09■■■■□ 3.21
HMGB1-205ENST00000399494 GJB1P08034 283 aa35.09■■■■□ 3.21
HMGB1-205ENST00000399494 GJA8P48165 433 aa35.09■■■■□ 3.21
HMGB1-205ENST00000399494 GORABQ5T7V8 394 aa35.09■■■■□ 3.21
HMGB1-205ENST00000399494 BIN2Q9UBW5 565 aaPredicted RBP35.09■■■■□ 3.21
HMGB1-205ENST00000399494 TRIM75PA6NK02 468 aa35.08■■■■□ 3.21
HMGB1-205ENST00000399494 H0YGN5 161 aa35.08■■■■□ 3.21
HMGB1-205ENST00000399494 MAP4K4O95819 1239 aaPredicted RBP35.08■■■■□ 3.21
HMGB1-205ENST00000399494 GNAI2P04899 355 aa35.08■■■■□ 3.21
HMGB1-205ENST00000399494 GSTO1P78417 241 aa35.08■■■■□ 3.21
HMGB1-205ENST00000399494 CCDC84Q86UT8 332 aaPredicted RBP35.08■■■■□ 3.21
HMGB1-205ENST00000399494 PHIPQ8WWQ0 1821 aa35.07■■■■□ 3.2
HMGB1-205ENST00000399494 PNMA6EA0A0J9YXQ4 647 aa35.07■■■■□ 3.2
HMGB1-205ENST00000399494 ARID4AP29374 1257 aaPredicted RBP35.07■■■■□ 3.2
HMGB1-205ENST00000399494 FXR1P51114 621 aaKnown RBP eCLIP35.07■■■■□ 3.2
HMGB1-205ENST00000399494 UBXN2AP68543 259 aa35.07■■■■□ 3.2
HMGB1-205ENST00000399494 RNF208Q9H0X6 261 aa35.07■■■■□ 3.2
HMGB1-205ENST00000399494 XPO5Q9HAV4 1204 aaKnown RBP eCLIP35.07■■■■□ 3.2
HMGB1-205ENST00000399494 MGAMO43451 1857 aa35.06■■■■□ 3.2
HMGB1-205ENST00000399494 DOCK1Q14185 1865 aa35.06■■■■□ 3.2
HMGB1-205ENST00000399494 G3BP1Q13283 466 aaKnown RBP eCLIP35.06■■■■□ 3.2
HMGB1-205ENST00000399494 SLAIN1Q8ND83 568 aa35.06■■■■□ 3.2
HMGB1-205ENST00000399494 UBE2Q1Q7Z7E8 422 aa35.05■■■■□ 3.2
HMGB1-205ENST00000399494 AGTPBP1Q9UPW5 1226 aa35.05■■■■□ 3.2
HMGB1-205ENST00000399494 PTPRFP10586 1907 aa35.04■■■■□ 3.2
HMGB1-205ENST00000399494 FAM196BA6NMK8 535 aa35.04■■■■□ 3.2
Retrieved 100 of 20,778 RNA–protein pairs in 99.3 ms