RNA–Protein interactions for RNA: ENST00000374426.6

CXCL12-202, Transcript of C-X-C motif chemokine ligand 12, humanhuman

TSL 1 (best) BASIC

Gene CXCL12, Length 470 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12-202ENST00000374426 HDAC5Q9UQL6 1122 aa17.13■□□□□ 0.33
CXCL12-202ENST00000374426 ZHX2Q9Y6X8 837 aa17.13■□□□□ 0.33
CXCL12-202ENST00000374426 MYH2Q9UKX2 1941 aa17.13■□□□□ 0.33
CXCL12-202ENST00000374426 A0A0G2JLL6 359 aaPredicted RBP17.12■□□□□ 0.33
CXCL12-202ENST00000374426 SLURP2P0DP57 97 aa17.12■□□□□ 0.33
CXCL12-202ENST00000374426 PTPRAP18433 802 aa17.12■□□□□ 0.33
CXCL12-202ENST00000374426 GRK4P32298 578 aa17.12■□□□□ 0.33
CXCL12-202ENST00000374426 FXR1P51114 621 aaKnown RBP eCLIP17.12■□□□□ 0.33
CXCL12-202ENST00000374426 MAP3K10Q02779 954 aa17.12■□□□□ 0.33
CXCL12-202ENST00000374426 PRRT2Q7Z6L0 340 aaPredicted RBP17.12■□□□□ 0.33
CXCL12-202ENST00000374426 DZIP1Q86YF9 867 aaKnown RBP17.12■□□□□ 0.33
CXCL12-202ENST00000374426 RAET1EQ8TD07 263 aa17.12■□□□□ 0.33
CXCL12-202ENST00000374426 FAM163AQ96GL9 167 aaPredicted RBP17.12■□□□□ 0.33
CXCL12-202ENST00000374426 DDX4Q9NQI0 724 aaKnown RBP17.12■□□□□ 0.33
CXCL12-202ENST00000374426 ABCF2Q9UG63 623 aa17.12■□□□□ 0.33
CXCL12-202ENST00000374426 COLQQ9Y215 455 aaPredicted RBP17.12■□□□□ 0.33
CXCL12-202ENST00000374426 PDS5AQ29RF7 1337 aaKnown RBP17.12■□□□□ 0.33
CXCL12-202ENST00000374426 MYPNQ86TC9 1320 aa17.12■□□□□ 0.33
CXCL12-202ENST00000374426 DOCK2Q92608 1830 aa17.12■□□□□ 0.33
CXCL12-202ENST00000374426 DDTLA6NHG4 134 aaPredicted RBP17.11■□□□□ 0.33
CXCL12-202ENST00000374426 PICK1Q9NRD5 415 aa17.11■□□□□ 0.33
CXCL12-202ENST00000374426 AFG3L2Q9Y4W6 797 aa17.11■□□□□ 0.33
CXCL12-202ENST00000374426 A0A1B0GUL7 405 aa17.1■□□□□ 0.33
CXCL12-202ENST00000374426 H0YGN5 161 aa17.1■□□□□ 0.33
CXCL12-202ENST00000374426 BTDP43251 543 aa17.1■□□□□ 0.33
CXCL12-202ENST00000374426 RARSP54136 660 aaKnown RBP17.1■□□□□ 0.33
CXCL12-202ENST00000374426 PRKCZQ05513 592 aa17.1■□□□□ 0.33
CXCL12-202ENST00000374426 TFCP2Q12800 502 aa17.1■□□□□ 0.33
CXCL12-202ENST00000374426 FASTKD5Q7L8L6 764 aaKnown RBP17.1■□□□□ 0.33
CXCL12-202ENST00000374426 ZSCAN29Q8IWY8 852 aaPredicted RBP17.1■□□□□ 0.33
CXCL12-202ENST00000374426 XAGE2Q96GT9 111 aa17.1■□□□□ 0.33
CXCL12-202ENST00000374426 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP17.1■□□□□ 0.33
CXCL12-202ENST00000374426 FCGRTP55899 365 aa17.09■□□□□ 0.33
CXCL12-202ENST00000374426 MECOMQ03112 1051 aa17.09■□□□□ 0.33
CXCL12-202ENST00000374426 PICALMQ13492 652 aa17.09■□□□□ 0.33
CXCL12-202ENST00000374426 MTX1Q13505 466 aa17.09■□□□□ 0.33
CXCL12-202ENST00000374426 SPTY2D1Q68D10 685 aaPredicted RBP17.09■□□□□ 0.33
CXCL12-202ENST00000374426 SLF2Q8IX21 1173 aa17.09■□□□□ 0.33
CXCL12-202ENST00000374426 ZNF384Q8TF68 577 aa17.09■□□□□ 0.33
CXCL12-202ENST00000374426 MROH7-TTC4A0A0A0MT08 1334 aa17.09■□□□□ 0.33
CXCL12-202ENST00000374426 SRGAP3O43295 1099 aa17.08■□□□□ 0.32
CXCL12-202ENST00000374426 CTNND1O60716 968 aaKnown RBP17.08■□□□□ 0.32
CXCL12-202ENST00000374426 GJB1P08034 283 aa17.08■□□□□ 0.32
CXCL12-202ENST00000374426 CCL5P13501 91 aa17.08■□□□□ 0.32
CXCL12-202ENST00000374426 GJA8P48165 433 aa17.08■□□□□ 0.32
CXCL12-202ENST00000374426 RHBDL3P58872 404 aa17.08■□□□□ 0.32
CXCL12-202ENST00000374426 MVPQ14764 893 aaKnown RBP17.08■□□□□ 0.32
CXCL12-202ENST00000374426 GADL1Q6ZQY3 521 aa17.08■□□□□ 0.32
CXCL12-202ENST00000374426 UBE2Q1Q7Z7E8 422 aa17.08■□□□□ 0.32
CXCL12-202ENST00000374426 NKX2-3Q8TAU0 364 aa17.08■□□□□ 0.32
CXCL12-202ENST00000374426 FRMD4AQ9P2Q2 1039 aaPredicted RBP17.08■□□□□ 0.32
CXCL12-202ENST00000374426 GABRQQ9UN88 632 aa17.08■□□□□ 0.32
CXCL12-202ENST00000374426 AKAP2Q9Y2D5 859 aa17.08■□□□□ 0.32
CXCL12-202ENST00000374426 SLC45A1Q9Y2W3 748 aa17.08■□□□□ 0.32
CXCL12-202ENST00000374426 GPR75-ASB3A0A0A6YYF3 556 aa17.07■□□□□ 0.32
CXCL12-202ENST00000374426 GNAI3P08754 354 aa17.07■□□□□ 0.32
CXCL12-202ENST00000374426 CCDC84Q86UT8 332 aaPredicted RBP17.07■□□□□ 0.32
CXCL12-202ENST00000374426 ARHGAP45Q92619 1136 aa17.07■□□□□ 0.32
CXCL12-202ENST00000374426 RNF208Q9H0X6 261 aa17.07■□□□□ 0.32
CXCL12-202ENST00000374426 BIN2Q9UBW5 565 aaPredicted RBP17.07■□□□□ 0.32
CXCL12-202ENST00000374426 PTPRFP10586 1907 aa17.07■□□□□ 0.32
CXCL12-202ENST00000374426 DOCK1Q14185 1865 aa17.06■□□□□ 0.32
CXCL12-202ENST00000374426 PHIPQ8WWQ0 1821 aa17.06■□□□□ 0.32
CXCL12-202ENST00000374426 TRIM75PA6NK02 468 aa17.06■□□□□ 0.32
CXCL12-202ENST00000374426 PI16Q6UXB8 463 aa17.06■□□□□ 0.32
CXCL12-202ENST00000374426 ERICH6Q7L0X2 663 aa17.06■□□□□ 0.32
CXCL12-202ENST00000374426 SLAIN1Q8ND83 568 aa17.06■□□□□ 0.32
CXCL12-202ENST00000374426 HMG20BQ9P0W2 317 aa17.06■□□□□ 0.32
CXCL12-202ENST00000374426 MGAMO43451 1857 aa17.05■□□□□ 0.32
CXCL12-202ENST00000374426 FAM196BA6NMK8 535 aa17.05■□□□□ 0.32
CXCL12-202ENST00000374426 TBC1D12O60347 775 aa17.05■□□□□ 0.32
CXCL12-202ENST00000374426 NPM3O75607 178 aaKnown RBP17.05■□□□□ 0.32
CXCL12-202ENST00000374426 FLT3LGP49771 235 aa17.05■□□□□ 0.32
CXCL12-202ENST00000374426 UBXN2AP68543 259 aa17.05■□□□□ 0.32
CXCL12-202ENST00000374426 NEUROD6Q96NK8 337 aa17.05■□□□□ 0.32
CXCL12-202ENST00000374426 UNC93B1Q9H1C4 597 aa17.05■□□□□ 0.32
CXCL12-202ENST00000374426 LAMA3Q16787 3333 aa17.05■□□□□ 0.32
CXCL12-202ENST00000374426 ADCY3O60266 1144 aa17.04■□□□□ 0.32
CXCL12-202ENST00000374426 TBC1D9Q6ZT07 1266 aa17.04■□□□□ 0.32
CXCL12-202ENST00000374426 SPATA5Q8NB90 893 aa17.04■□□□□ 0.32
CXCL12-202ENST00000374426 SMCR8Q8TEV9 937 aaPredicted RBP17.04■□□□□ 0.32
CXCL12-202ENST00000374426 U2AF1L4Q8WU68 220 aaKnown RBP17.04■□□□□ 0.32
CXCL12-202ENST00000374426 DPF3Q92784 378 aa17.04■□□□□ 0.32
CXCL12-202ENST00000374426 NSUN4Q96CB9 384 aaKnown RBP17.04■□□□□ 0.32
CXCL12-202ENST00000374426 AGTPBP1Q9UPW5 1226 aa17.04■□□□□ 0.32
CXCL12-202ENST00000374426 TNPO2O14787 897 aaKnown RBP17.03■□□□□ 0.32
CXCL12-202ENST00000374426 ELNP15502 786 aa17.03■□□□□ 0.32
CXCL12-202ENST00000374426 ARID4AP29374 1257 aaPredicted RBP17.03■□□□□ 0.32
CXCL12-202ENST00000374426 TREML2Q5T2D2 321 aa17.03■□□□□ 0.32
CXCL12-202ENST00000374426 CHRDL2Q6WN34 429 aa17.03■□□□□ 0.32
CXCL12-202ENST00000374426 XPO5Q9HAV4 1204 aaKnown RBP eCLIP17.03■□□□□ 0.32
CXCL12-202ENST00000374426 COL2A1P02458 1487 aaPredicted RBP17.02■□□□□ 0.32
CXCL12-202ENST00000374426 PNMA6EA0A0J9YXQ4 647 aa17.02■□□□□ 0.32
CXCL12-202ENST00000374426 TRIM27P14373 513 aa17.02■□□□□ 0.32
CXCL12-202ENST00000374426 GSTO1P78417 241 aa17.02■□□□□ 0.32
CXCL12-202ENST00000374426 IRF5Q13568 498 aa17.02■□□□□ 0.32
CXCL12-202ENST00000374426 ANKRD13CQ8N6S4 541 aa17.02■□□□□ 0.32
CXCL12-202ENST00000374426 OSBPL5Q9H0X9 879 aaPredicted RBP17.02■□□□□ 0.32
CXCL12-202ENST00000374426 TNNQ9UQP3 1299 aa17.02■□□□□ 0.32
CXCL12-202ENST00000374426 SGPL1O95470 568 aa17.01■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms