RNA–Protein interactions for RNA: ENST00000340477.9

SYNE4-202, Transcript of spectrin repeat containing nuclear envelope family member 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNE4, Length 1,004 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE4-202ENST00000340477 PPP4CP60510 307 aa23.26■■□□□ 1.31
SYNE4-202ENST00000340477 IRX6P78412 446 aaPredicted RBP23.26■■□□□ 1.31
SYNE4-202ENST00000340477 SLC9C2Q5TAH2 1124 aa23.26■■□□□ 1.31
SYNE4-202ENST00000340477 WBP1LQ9NX94 342 aa23.26■■□□□ 1.31
SYNE4-202ENST00000340477 TTC41PQ6P2S7 1318 aa23.26■■□□□ 1.31
SYNE4-202ENST00000340477 FOCADQ5VW36 1801 aa23.26■■□□□ 1.31
SYNE4-202ENST00000340477 COL2A1P02458 1487 aaPredicted RBP23.25■■□□□ 1.31
SYNE4-202ENST00000340477 SH3RF3Q8TEJ3 882 aaPredicted RBP23.25■■□□□ 1.31
SYNE4-202ENST00000340477 WRNIP1Q96S55 665 aa23.25■■□□□ 1.31
SYNE4-202ENST00000340477 CDK5RAP2Q96SN8 1893 aa23.25■■□□□ 1.31
SYNE4-202ENST00000340477 CA12O43570 354 aa23.24■■□□□ 1.31
SYNE4-202ENST00000340477 PDE6AP16499 860 aa23.24■■□□□ 1.31
SYNE4-202ENST00000340477 MAP3K9P80192 1104 aa23.24■■□□□ 1.31
SYNE4-202ENST00000340477 KIF23Q02241 960 aaPredicted RBP23.24■■□□□ 1.31
SYNE4-202ENST00000340477 ZSCAN25Q6NSZ9 544 aa23.24■■□□□ 1.31
SYNE4-202ENST00000340477 ADGRA1Q86SQ6 560 aa23.24■■□□□ 1.31
SYNE4-202ENST00000340477 MIGA1Q8NAN2 632 aa23.24■■□□□ 1.31
SYNE4-202ENST00000340477 DDX4Q9NQI0 724 aaKnown RBP23.24■■□□□ 1.31
SYNE4-202ENST00000340477 PCNTO95613 3336 aa23.24■■□□□ 1.31
SYNE4-202ENST00000340477 ZBTB48P10074 688 aaPredicted RBP23.23■■□□□ 1.31
SYNE4-202ENST00000340477 MX1P20591 662 aa23.23■■□□□ 1.31
SYNE4-202ENST00000340477 MIGA2Q7L4E1 593 aa23.23■■□□□ 1.31
SYNE4-202ENST00000340477 DDX55Q8NHQ9 600 aaKnown RBP eCLIP23.23■■□□□ 1.31
SYNE4-202ENST00000340477 CLMNQ96JQ2 1002 aa23.23■■□□□ 1.31
SYNE4-202ENST00000340477 OSBPL5Q9H0X9 879 aaPredicted RBP23.23■■□□□ 1.31
SYNE4-202ENST00000340477 GLRX3O76003 335 aaKnown RBP23.22■■□□□ 1.31
SYNE4-202ENST00000340477 SREBF2Q12772 1141 aa23.22■■□□□ 1.31
SYNE4-202ENST00000340477 MKRN3Q13064 507 aaKnown RBP23.22■■□□□ 1.31
SYNE4-202ENST00000340477 SPRYD7Q5W111 196 aa23.22■■□□□ 1.31
SYNE4-202ENST00000340477 ZFPM1Q8IX07 1006 aa23.22■■□□□ 1.31
SYNE4-202ENST00000340477 EDC3Q96F86 508 aaKnown RBP23.22■■□□□ 1.31
SYNE4-202ENST00000340477 ELP3Q9H9T3 547 aa23.22■■□□□ 1.31
SYNE4-202ENST00000340477 ATRNL1Q5VV63 1379 aa23.22■■□□□ 1.31
SYNE4-202ENST00000340477 MAGEB6P1A0A0J9YX57 407 aa23.21■■□□□ 1.31
SYNE4-202ENST00000340477 USP5P45974 858 aa23.21■■□□□ 1.31
SYNE4-202ENST00000340477 CTCFP49711 727 aaPredicted RBP23.21■■□□□ 1.31
SYNE4-202ENST00000340477 VGLL4Q14135 290 aa23.21■■□□□ 1.31
SYNE4-202ENST00000340477 LRRFIP1Q32MZ4 808 aaKnown RBP23.21■■□□□ 1.31
SYNE4-202ENST00000340477 TGFBRAP1Q8WUH2 860 aa23.21■■□□□ 1.31
SYNE4-202ENST00000340477 WNK4Q96J92 1243 aa23.21■■□□□ 1.31
SYNE4-202ENST00000340477 ZNF532Q9HCE3 1301 aa23.21■■□□□ 1.31
SYNE4-202ENST00000340477 FLT1P17948 1338 aa23.2■■□□□ 1.3
SYNE4-202ENST00000340477 DYNLL1P63167 89 aaKnown RBP23.2■■□□□ 1.3
SYNE4-202ENST00000340477 TSHZ3Q63HK5 1081 aa23.2■■□□□ 1.3
SYNE4-202ENST00000340477 MAPKAPK5Q8IW41 473 aa23.2■■□□□ 1.3
SYNE4-202ENST00000340477 SMC5Q8IY18 1101 aa23.2■■□□□ 1.3
SYNE4-202ENST00000340477 TRIM34Q9BYJ4 488 aa23.2■■□□□ 1.3
SYNE4-202ENST00000340477 DHX36Q9H2U1 1008 aaKnown RBP23.2■■□□□ 1.3
SYNE4-202ENST00000340477 DDTLA6NHG4 134 aaPredicted RBP23.19■■□□□ 1.3
SYNE4-202ENST00000340477 B4GALNT3Q6L9W6 998 aa23.19■■□□□ 1.3
SYNE4-202ENST00000340477 PPP1R3FQ6ZSY5 799 aaPredicted RBP23.19■■□□□ 1.3
SYNE4-202ENST00000340477 ZIC5Q96T25 663 aa23.19■■□□□ 1.3
SYNE4-202ENST00000340477 CRNKL1Q9BZJ0 848 aaKnown RBP23.19■■□□□ 1.3
SYNE4-202ENST00000340477 MYH1P12882 1939 aa23.19■■□□□ 1.3
SYNE4-202ENST00000340477 NAV1Q8NEY1 1877 aa23.18■■□□□ 1.3
SYNE4-202ENST00000340477 MANSC4A6NHS7 340 aaPredicted RBP23.18■■□□□ 1.3
SYNE4-202ENST00000340477 FOXN1O15353 648 aa23.18■■□□□ 1.3
SYNE4-202ENST00000340477 HLA-DOAP06340 250 aa23.18■■□□□ 1.3
SYNE4-202ENST00000340477 ADD2P35612 726 aa23.18■■□□□ 1.3
SYNE4-202ENST00000340477 SH3BP5LQ7L8J4 393 aa23.18■■□□□ 1.3
SYNE4-202ENST00000340477 OPTNQ96CV9 577 aa23.18■■□□□ 1.3
SYNE4-202ENST00000340477 LAMB1P07942 1786 aa23.18■■□□□ 1.3
SYNE4-202ENST00000340477 ERO1BQ86YB8 467 aa23.17■■□□□ 1.3
SYNE4-202ENST00000340477 KBTBD3Q8NAB2 608 aa23.17■■□□□ 1.3
SYNE4-202ENST00000340477 ZKSCAN4Q969J2 545 aaPredicted RBP23.17■■□□□ 1.3
SYNE4-202ENST00000340477 LNPKQ9C0E8 428 aa23.17■■□□□ 1.3
SYNE4-202ENST00000340477 IGHDP01880 384 aa23.16■■□□□ 1.3
SYNE4-202ENST00000340477 INHBEP58166 350 aa23.16■■□□□ 1.3
SYNE4-202ENST00000340477 UBE3CQ15386 1083 aa23.16■■□□□ 1.3
SYNE4-202ENST00000340477 OTUD7AQ8TE49 926 aaPredicted RBP23.16■■□□□ 1.3
SYNE4-202ENST00000340477 OTUD5Q96G74 571 aa23.16■■□□□ 1.3
SYNE4-202ENST00000340477 XPO5Q9HAV4 1204 aaKnown RBP eCLIP23.16■■□□□ 1.3
SYNE4-202ENST00000340477 SAGE1Q9NXZ1 904 aa23.16■■□□□ 1.3
SYNE4-202ENST00000340477 PI4KBQ9UBF8 816 aa23.16■■□□□ 1.3
SYNE4-202ENST00000340477 ZNF112Q9UJU3 913 aa23.16■■□□□ 1.3
SYNE4-202ENST00000340477 DOCK1Q14185 1865 aa23.15■■□□□ 1.3
SYNE4-202ENST00000340477 TCRBV5S4A2TA0A5A2 114 aa23.15■■□□□ 1.3
SYNE4-202ENST00000340477 SPDYE5A6NIY4 337 aa23.15■■□□□ 1.3
SYNE4-202ENST00000340477 INPP5BP32019 993 aa23.15■■□□□ 1.3
SYNE4-202ENST00000340477 CRACR2BQ8N4Y2 399 aaPredicted RBP23.15■■□□□ 1.3
SYNE4-202ENST00000340477 PI4K2BQ8TCG2 481 aa23.15■■□□□ 1.3
SYNE4-202ENST00000340477 RIOK1Q9BRS2 568 aaKnown RBP23.15■■□□□ 1.3
SYNE4-202ENST00000340477 PICK1Q9NRD5 415 aa23.15■■□□□ 1.3
SYNE4-202ENST00000340477 HERC5Q9UII4 1024 aaKnown RBP23.15■■□□□ 1.3
SYNE4-202ENST00000340477 SNCAIPQ9Y6H5 919 aa23.15■■□□□ 1.3
SYNE4-202ENST00000340477 TBC1D12O60347 775 aa23.14■■□□□ 1.29
SYNE4-202ENST00000340477 ZFYP08048 801 aaPredicted RBP23.14■■□□□ 1.29
SYNE4-202ENST00000340477 NOL9Q5SY16 702 aaKnown RBP23.14■■□□□ 1.29
SYNE4-202ENST00000340477 CHD1LQ86WJ1 897 aa23.14■■□□□ 1.29
SYNE4-202ENST00000340477 DDRGK1Q96HY6 314 aa23.14■■□□□ 1.29
SYNE4-202ENST00000340477 SAP30BPQ9UHR5 308 aaKnown RBP23.14■■□□□ 1.29
SYNE4-202ENST00000340477 MBD4O95243 580 aa23.13■■□□□ 1.29
SYNE4-202ENST00000340477 GTF2A2P52657 109 aa23.13■■□□□ 1.29
SYNE4-202ENST00000340477 NUCB1Q02818 461 aa23.13■■□□□ 1.29
SYNE4-202ENST00000340477 OTUD7BQ6GQQ9 843 aa23.13■■□□□ 1.29
SYNE4-202ENST00000340477 FSD1Q9BTV5 496 aa23.13■■□□□ 1.29
SYNE4-202ENST00000340477 STAP2Q9UGK3 403 aa23.13■■□□□ 1.29
SYNE4-202ENST00000340477 SALL3Q9BXA9 1300 aa23.12■■□□□ 1.29
SYNE4-202ENST00000340477 ALDH1A1P00352 501 aa23.12■■□□□ 1.29
SYNE4-202ENST00000340477 HSPA8P11142 646 aaKnown RBP23.12■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 117.2 ms