RNA–Protein interactions for RNA: ENST00000338045.7

LIMS1-202, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,876 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-202ENST00000338045 PLCG2P16885 1265 aa18.2■□□□□ 0.5
LIMS1-202ENST00000338045 POLD1P28340 1107 aa18.2■□□□□ 0.5
LIMS1-202ENST00000338045 BTDP43251 543 aa18.2■□□□□ 0.5
LIMS1-202ENST00000338045 CCDC93Q567U6 631 aa18.2■□□□□ 0.5
LIMS1-202ENST00000338045 CHMP4CQ96CF2 233 aa18.2■□□□□ 0.5
LIMS1-202ENST00000338045 BRPF3Q9ULD4 1205 aa18.2■□□□□ 0.5
LIMS1-202ENST00000338045 ATF5Q9Y2D1 282 aaPredicted RBP18.2■□□□□ 0.5
LIMS1-202ENST00000338045 LAMB1P07942 1786 aa18.2■□□□□ 0.5
LIMS1-202ENST00000338045 SMIM22K7EJ46 135 aa18.2■□□□□ 0.5
LIMS1-202ENST00000338045 BAG4O95429 457 aaKnown RBP18.2■□□□□ 0.5
LIMS1-202ENST00000338045 LIFRP42702 1097 aa18.2■□□□□ 0.5
LIMS1-202ENST00000338045 STRIP1Q5VSL9 837 aa18.2■□□□□ 0.5
LIMS1-202ENST00000338045 SGMS1Q86VZ5 419 aa18.2■□□□□ 0.5
LIMS1-202ENST00000338045 RTKN2Q8IZC4 609 aa18.2■□□□□ 0.5
LIMS1-202ENST00000338045 SMARCC2Q8TAQ2 1214 aa18.2■□□□□ 0.5
LIMS1-202ENST00000338045 CYP2D7A0A087X1C5 515 aa18.19■□□□□ 0.5
LIMS1-202ENST00000338045 DDX11L8A8MPP1 907 aa18.19■□□□□ 0.5
LIMS1-202ENST00000338045 STX6O43752 255 aa18.19■□□□□ 0.5
LIMS1-202ENST00000338045 ECE2O60344 883 aa18.19■□□□□ 0.5
LIMS1-202ENST00000338045 RHBDL3P58872 404 aa18.19■□□□□ 0.5
LIMS1-202ENST00000338045 R3HDM1Q15032 1099 aaKnown RBP18.19■□□□□ 0.5
LIMS1-202ENST00000338045 PSMD1Q99460 953 aa18.19■□□□□ 0.5
LIMS1-202ENST00000338045 SGIP1Q9BQI5 828 aa18.19■□□□□ 0.5
LIMS1-202ENST00000338045 HPS5Q9UPZ3 1129 aa18.19■□□□□ 0.5
LIMS1-202ENST00000338045 DDX52Q9Y2R4 599 aaKnown RBP eCLIP18.19■□□□□ 0.5
LIMS1-202ENST00000338045 DAGLAQ9Y4D2 1042 aa18.19■□□□□ 0.5
LIMS1-202ENST00000338045 ZNF646O15015 1829 aaPredicted RBP18.19■□□□□ 0.5
LIMS1-202ENST00000338045 KLF18A0A0U1RQI7 1052 aa18.18■□□□□ 0.5
LIMS1-202ENST00000338045 USP5P45974 858 aa18.18■□□□□ 0.5
LIMS1-202ENST00000338045 AOC3Q16853 763 aa18.18■□□□□ 0.5
LIMS1-202ENST00000338045 NSUN7Q8NE18 718 aaKnown RBP18.18■□□□□ 0.5
LIMS1-202ENST00000338045 ESR2Q92731 530 aa18.18■□□□□ 0.5
LIMS1-202ENST00000338045 LY9Q9HBG7 655 aa18.18■□□□□ 0.5
LIMS1-202ENST00000338045 SCN9AQ15858 1988 aa18.18■□□□□ 0.5
LIMS1-202ENST00000338045 ORC4O43929 436 aa18.18■□□□□ 0.5
LIMS1-202ENST00000338045 CTDNEP1O95476 244 aa18.18■□□□□ 0.5
LIMS1-202ENST00000338045 PDCP20941 246 aa18.18■□□□□ 0.5
LIMS1-202ENST00000338045 DACT2Q5SW24 774 aa18.18■□□□□ 0.5
LIMS1-202ENST00000338045 FBXW7Q969H0 707 aa18.18■□□□□ 0.5
LIMS1-202ENST00000338045 KCNQ5Q9NR82 932 aa18.18■□□□□ 0.5
LIMS1-202ENST00000338045 MCM9Q9NXL9 1143 aa18.18■□□□□ 0.5
LIMS1-202ENST00000338045 JAK2O60674 1132 aa18.17■□□□□ 0.5
LIMS1-202ENST00000338045 ZSCAN22P10073 491 aaPredicted RBP18.17■□□□□ 0.5
LIMS1-202ENST00000338045 CCT2P78371 535 aaKnown RBP18.17■□□□□ 0.5
LIMS1-202ENST00000338045 TMEM67Q5HYA8 995 aa18.17■□□□□ 0.5
LIMS1-202ENST00000338045 RRP12Q5JTH9 1297 aaKnown RBP18.17■□□□□ 0.5
LIMS1-202ENST00000338045 C12orf60Q5U649 245 aa18.17■□□□□ 0.5
LIMS1-202ENST00000338045 TGFBRAP1Q8WUH2 860 aa18.17■□□□□ 0.5
LIMS1-202ENST00000338045 MXD3Q9BW11 206 aa18.17■□□□□ 0.5
LIMS1-202ENST00000338045 TTF2Q9UNY4 1162 aaKnown RBP18.17■□□□□ 0.5
LIMS1-202ENST00000338045 ROBO3Q96MS0 1386 aa18.17■□□□□ 0.5
LIMS1-202ENST00000338045 CDK5RAP2Q96SN8 1893 aa18.16■□□□□ 0.5
LIMS1-202ENST00000338045 GOLGA8BA8MQT2 603 aa18.16■□□□□ 0.5
LIMS1-202ENST00000338045 IFIT3O14879 490 aaKnown RBP18.16■□□□□ 0.5
LIMS1-202ENST00000338045 DTNBO60941 627 aa18.16■□□□□ 0.5
LIMS1-202ENST00000338045 USP17L8P0C7I0 530 aa18.16■□□□□ 0.5
LIMS1-202ENST00000338045 NT5C2P49902 561 aa18.16■□□□□ 0.5
LIMS1-202ENST00000338045 APOA5Q6Q788 366 aa18.16■□□□□ 0.5
LIMS1-202ENST00000338045 HHIPL2Q6UWX4 724 aa18.16■□□□□ 0.5
LIMS1-202ENST00000338045 MRIQ9BWK5 157 aa18.16■□□□□ 0.5
LIMS1-202ENST00000338045 NCOA5Q9HCD5 579 aaKnown RBP18.16■□□□□ 0.5
LIMS1-202ENST00000338045 TOMM22Q9NS69 142 aa18.16■□□□□ 0.5
LIMS1-202ENST00000338045 MTMR6Q9Y217 621 aa18.16■□□□□ 0.5
LIMS1-202ENST00000338045 DDX60LQ5H9U9 1706 aaKnown RBP18.16■□□□□ 0.5
LIMS1-202ENST00000338045 USP17L3A6NCW0 530 aa18.16■□□□□ 0.5
LIMS1-202ENST00000338045 USP17L4A6NCW7 530 aa18.16■□□□□ 0.5
LIMS1-202ENST00000338045 PPIP5K2O43314 1243 aa18.16■□□□□ 0.5
LIMS1-202ENST00000338045 SLC3A2P08195 630 aaKnown RBP18.16■□□□□ 0.5
LIMS1-202ENST00000338045 CYP2D6P10635 497 aa18.16■□□□□ 0.5
LIMS1-202ENST00000338045 HMGN5P82970 282 aaKnown RBP18.16■□□□□ 0.5
LIMS1-202ENST00000338045 EVX2Q03828 476 aa18.16■□□□□ 0.5
LIMS1-202ENST00000338045 SART3Q15020 963 aaKnown RBP18.16■□□□□ 0.5
LIMS1-202ENST00000338045 SOGA3Q5TF21 947 aa18.16■□□□□ 0.5
LIMS1-202ENST00000338045 LARP1BQ659C4 914 aaKnown RBP18.16■□□□□ 0.5
LIMS1-202ENST00000338045 USP17L1Q7RTZ2 530 aa18.16■□□□□ 0.5
LIMS1-202ENST00000338045 TEX11Q8IYF3 940 aa18.16■□□□□ 0.5
LIMS1-202ENST00000338045 STK11IPQ8N1F8 1099 aa18.16■□□□□ 0.5
LIMS1-202ENST00000338045 SENP2Q9HC62 589 aa18.16■□□□□ 0.5
LIMS1-202ENST00000338045 PIM2Q9P1W9 311 aa18.16■□□□□ 0.5
LIMS1-202ENST00000338045 NAV1Q8NEY1 1877 aa18.15■□□□□ 0.5
LIMS1-202ENST00000338045 VPS33BQ9H267 617 aa18.15■□□□□ 0.5
LIMS1-202ENST00000338045 NAP1L2Q9ULW6 460 aaPredicted RBP18.15■□□□□ 0.5
LIMS1-202ENST00000338045 PTPDC1A2A3K4 754 aa18.14■□□□□ 0.49
LIMS1-202ENST00000338045 DHX16O60231 1041 aaKnown RBP18.14■□□□□ 0.49
LIMS1-202ENST00000338045 SEC23AQ15436 765 aa18.14■□□□□ 0.49
LIMS1-202ENST00000338045 FOXD4L5Q5VV16 416 aaPredicted RBP18.14■□□□□ 0.49
LIMS1-202ENST00000338045 TMTC2Q8N394 836 aa18.14■□□□□ 0.49
LIMS1-202ENST00000338045 FOXD4L4Q8WXT5 416 aaPredicted RBP18.14■□□□□ 0.49
LIMS1-202ENST00000338045 NID2Q14112 1375 aa18.14■□□□□ 0.49
LIMS1-202ENST00000338045 FLT1P17948 1338 aa18.14■□□□□ 0.49
LIMS1-202ENST00000338045 F8W031 263 aaPredicted RBP18.14■□□□□ 0.49
LIMS1-202ENST00000338045 F13A1P00488 732 aa18.14■□□□□ 0.49
LIMS1-202ENST00000338045 PTMSP20962 102 aa18.14■□□□□ 0.49
LIMS1-202ENST00000338045 HDLBPQ00341 1268 aaKnown RBP18.14■□□□□ 0.49
LIMS1-202ENST00000338045 PDE4BQ07343 736 aa18.14■□□□□ 0.49
LIMS1-202ENST00000338045 MAPKAPK5Q8IW41 473 aa18.14■□□□□ 0.49
LIMS1-202ENST00000338045 TEKT1Q969V4 418 aa18.14■□□□□ 0.49
LIMS1-202ENST00000338045 BRCA1P38398 1863 aaKnown RBP18.14■□□□□ 0.49
LIMS1-202ENST00000338045 FOCADQ5VW36 1801 aa18.13■□□□□ 0.49
LIMS1-202ENST00000338045 YDJCA8MPS7 323 aa18.13■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 105.1 ms