RNA–Protein interactions for RNA: ENST00000264883.7

NUP54-201, Transcript of nucleoporin 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NUP54, Length 2,367 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-201ENST00000264883 METTL22Q9BUU2 404 aaPredicted RBP15□□□□□ -0.01
NUP54-201ENST00000264883 SIL1Q9H173 461 aa15□□□□□ -0.01
NUP54-201ENST00000264883 ACBD3Q9H3P7 528 aa15□□□□□ -0.01
NUP54-201ENST00000264883 PCDHA7Q9UN72 937 aa15□□□□□ -0.01
NUP54-201ENST00000264883 SLC3A2P08195 630 aaKnown RBP14.99□□□□□ -0.01
NUP54-201ENST00000264883 ADALQ6DHV7 355 aa14.99□□□□□ -0.01
NUP54-201ENST00000264883 BAG1Q99933 345 aaPredicted RBP14.99□□□□□ -0.01
NUP54-201ENST00000264883 SLC52A2Q9HAB3 445 aa14.99□□□□□ -0.01
NUP54-201ENST00000264883 STRN4Q9NRL3 753 aa14.99□□□□□ -0.01
NUP54-201ENST00000264883 BTG4Q9NY30 223 aa14.99□□□□□ -0.01
NUP54-201ENST00000264883 RTEL1Q9NZ71 1219 aa14.99□□□□□ -0.01
NUP54-201ENST00000264883 PUF60Q9UHX1 559 aaKnown RBP14.99□□□□□ -0.01
NUP54-201ENST00000264883 DBNLQ9UJU6 430 aaKnown RBP14.99□□□□□ -0.01
NUP54-201ENST00000264883 WDHD1O75717 1129 aaPredicted RBP14.99□□□□□ -0.01
NUP54-201ENST00000264883 IL2RBP14784 551 aa14.99□□□□□ -0.01
NUP54-201ENST00000264883 USP8P40818 1118 aa14.99□□□□□ -0.01
NUP54-201ENST00000264883 RABL6Q3YEC7 729 aaPredicted RBP14.99□□□□□ -0.01
NUP54-201ENST00000264883 CEP112Q8N8E3 955 aa14.99□□□□□ -0.01
NUP54-201ENST00000264883 KBTBD3Q8NAB2 608 aa14.99□□□□□ -0.01
NUP54-201ENST00000264883 KAT2BQ92831 832 aa14.99□□□□□ -0.01
NUP54-201ENST00000264883 LAMA4Q16363 1823 aa14.98□□□□□ -0.01
NUP54-201ENST00000264883 SPEF2Q9C093 1822 aa14.98□□□□□ -0.01
NUP54-201ENST00000264883 HNRNPH1P31943 449 aaKnown RBP14.98□□□□□ -0.01
NUP54-201ENST00000264883 EVA1CP58658 441 aa14.98□□□□□ -0.01
NUP54-201ENST00000264883 EXOSC10Q01780 885 aaKnown RBP14.98□□□□□ -0.01
NUP54-201ENST00000264883 PDIA6Q15084 440 aa14.98□□□□□ -0.01
NUP54-201ENST00000264883 TTLL5Q6EMB2 1281 aa14.98□□□□□ -0.01
NUP54-201ENST00000264883 TOGARAM2Q6ZUX3 1019 aa14.98□□□□□ -0.01
NUP54-201ENST00000264883 HSD3B7Q9H2F3 369 aa14.98□□□□□ -0.01
NUP54-201ENST00000264883 RFX5P48382 616 aaPredicted RBP14.98□□□□□ -0.01
NUP54-201ENST00000264883 TDO2P48775 406 aa14.98□□□□□ -0.01
NUP54-201ENST00000264883 ISM2Q6H9L7 571 aa14.98□□□□□ -0.01
NUP54-201ENST00000264883 ZCRB1Q8TBF4 217 aaKnown RBP14.98□□□□□ -0.01
NUP54-201ENST00000264883 KCNG4Q8TDN1 519 aa14.98□□□□□ -0.01
NUP54-201ENST00000264883 GBP3Q9H0R5 595 aa14.98□□□□□ -0.01
NUP54-201ENST00000264883 TMEM232C9JQI7 657 aa14.97□□□□□ -0.01
NUP54-201ENST00000264883 YEATS4O95619 227 aa14.97□□□□□ -0.01
NUP54-201ENST00000264883 LIG3P49916 1009 aa14.97□□□□□ -0.01
NUP54-201ENST00000264883 KARSQ15046 597 aaKnown RBP14.97□□□□□ -0.01
NUP54-201ENST00000264883 PTPN21Q16825 1174 aa14.97□□□□□ -0.01
NUP54-201ENST00000264883 SKIDA1Q1XH10 827 aa14.97□□□□□ -0.01
NUP54-201ENST00000264883 AFAP1L1Q8TED9 768 aa14.97□□□□□ -0.01
NUP54-201ENST00000264883 PCDH11XQ9BZA7 1347 aa14.97□□□□□ -0.01
NUP54-201ENST00000264883 PCDH11YQ9BZA8 1340 aa14.97□□□□□ -0.01
NUP54-201ENST00000264883 STX10O60499 249 aa14.97□□□□□ -0.01
NUP54-201ENST00000264883 SATB1Q01826 763 aa14.97□□□□□ -0.01
NUP54-201ENST00000264883 RPAINQ86UA6 219 aa14.97□□□□□ -0.01
NUP54-201ENST00000264883 GPR108Q9NPR9 543 aa14.97□□□□□ -0.01
NUP54-201ENST00000264883 NEDD4P46934 1319 aa14.97□□□□□ -0.01
NUP54-201ENST00000264883 PLCH1Q4KWH8 1693 aa14.96□□□□□ -0.01
NUP54-201ENST00000264883 DISP2A7MBM2 1401 aa14.96□□□□□ -0.01
NUP54-201ENST00000264883 CTDNEP1O95476 244 aa14.96□□□□□ -0.01
NUP54-201ENST00000264883 TUBB4BP68371 445 aa14.96□□□□□ -0.01
NUP54-201ENST00000264883 PTPN12Q05209 780 aaKnown RBP14.96□□□□□ -0.01
NUP54-201ENST00000264883 NKX1-1Q15270 411 aaPredicted RBP14.96□□□□□ -0.01
NUP54-201ENST00000264883 DHX37Q8IY37 1157 aaKnown RBP14.96□□□□□ -0.01
NUP54-201ENST00000264883 PDILTQ8N807 584 aa14.96□□□□□ -0.01
NUP54-201ENST00000264883 EXOC5O00471 708 aa14.96□□□□□ -0.02
NUP54-201ENST00000264883 MYO1BO43795 1136 aa14.96□□□□□ -0.02
NUP54-201ENST00000264883 RNF40O75150 1001 aa14.96□□□□□ -0.02
NUP54-201ENST00000264883 VSNL1P62760 191 aa14.96□□□□□ -0.02
NUP54-201ENST00000264883 TFCP2Q12800 502 aa14.96□□□□□ -0.02
NUP54-201ENST00000264883 AIMP1Q12904 312 aaKnown RBP14.96□□□□□ -0.02
NUP54-201ENST00000264883 BRAPQ7Z569 592 aa14.96□□□□□ -0.02
NUP54-201ENST00000264883 POLR3EQ9NVU0 708 aa14.96□□□□□ -0.02
NUP54-201ENST00000264883 CDC23Q9UJX2 597 aa14.96□□□□□ -0.02
NUP54-201ENST00000264883 CARMIL3Q8ND23 1372 aa14.95□□□□□ -0.02
NUP54-201ENST00000264883 C5P01031 1676 aa14.95□□□□□ -0.02
NUP54-201ENST00000264883 NRAPQ86VF7 1730 aa14.95□□□□□ -0.02
NUP54-201ENST00000264883 RHOXF2BP0C7M4 288 aa14.95□□□□□ -0.02
NUP54-201ENST00000264883 MYL5Q02045 173 aa14.95□□□□□ -0.02
NUP54-201ENST00000264883 SF3A1Q15459 793 aaKnown RBP14.95□□□□□ -0.02
NUP54-201ENST00000264883 ZNF790Q6PG37 636 aa14.95□□□□□ -0.02
NUP54-201ENST00000264883 RHOXF2Q9BQY4 288 aa14.95□□□□□ -0.02
NUP54-201ENST00000264883 LRRIQ3A6PVS8 624 aaPredicted RBP14.95□□□□□ -0.02
NUP54-201ENST00000264883 STOX1Q6ZVD7 989 aa14.95□□□□□ -0.02
NUP54-201ENST00000264883 MYD88Q99836 296 aa14.95□□□□□ -0.02
NUP54-201ENST00000264883 DESI2Q9BSY9 194 aa14.95□□□□□ -0.02
NUP54-201ENST00000264883 HSPA1LP34931 641 aa14.94□□□□□ -0.02
NUP54-201ENST00000264883 FBXW10Q5XX13 1052 aa14.94□□□□□ -0.02
NUP54-201ENST00000264883 KCNV1Q6PIU1 500 aa14.94□□□□□ -0.02
NUP54-201ENST00000264883 ILDR1Q86SU0 546 aaPredicted RBP14.94□□□□□ -0.02
NUP54-201ENST00000264883 EDC3Q96F86 508 aaKnown RBP14.94□□□□□ -0.02
NUP54-201ENST00000264883 IRX2Q9BZI1 471 aaPredicted RBP14.94□□□□□ -0.02
NUP54-201ENST00000264883 SPATA31A6Q5VVP1 1343 aa14.94□□□□□ -0.02
NUP54-201ENST00000264883 ZNF202O95125 648 aa14.93□□□□□ -0.02
NUP54-201ENST00000264883 PDIA3P30101 505 aaKnown RBP14.93□□□□□ -0.02
NUP54-201ENST00000264883 GUCY1B3Q02153 619 aa14.93□□□□□ -0.02
NUP54-201ENST00000264883 TBX2Q13207 712 aaPredicted RBP14.93□□□□□ -0.02
NUP54-201ENST00000264883 STK38Q15208 465 aa14.93□□□□□ -0.02
NUP54-201ENST00000264883 ZMYM1Q5SVZ6 1142 aa14.93□□□□□ -0.02
NUP54-201ENST00000264883 KLHDC4Q8TBB5 520 aa14.93□□□□□ -0.02
NUP54-201ENST00000264883 XAGE3Q8WTP9 111 aa14.93□□□□□ -0.02
NUP54-201ENST00000264883 FAM212AQ96EL1 285 aa14.93□□□□□ -0.02
NUP54-201ENST00000264883 CLIC6Q96NY7 704 aa14.93□□□□□ -0.02
NUP54-201ENST00000264883 BCCIPQ9P287 314 aaKnown RBP eCLIP14.93□□□□□ -0.02
NUP54-201ENST00000264883 AFDNP55196 1824 aaKnown RBP14.93□□□□□ -0.02
NUP54-201ENST00000264883 GLI3P10071 1580 aa14.93□□□□□ -0.02
NUP54-201ENST00000264883 PRAMEF22A3QJZ6 481 aa14.93□□□□□ -0.02
NUP54-201ENST00000264883 EPHA10Q5JZY3 1008 aa14.93□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 79.6 ms