RNA–Protein interactions for RNA: ENST00000637184.1

CLN3-258, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,753 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-258ENST00000637184 VSIG2Q96IQ7 327 aa13.34□□□□□ -0.27
CLN3-258ENST00000637184 DAZ3Q9NR90 486 aaKnown RBP13.34□□□□□ -0.27
CLN3-258ENST00000637184 NUDT3O95989 172 aa13.33□□□□□ -0.28
CLN3-258ENST00000637184 TSHBP01222 138 aa13.33□□□□□ -0.28
CLN3-258ENST00000637184 HBDP02042 147 aa13.33□□□□□ -0.28
CLN3-258ENST00000637184 A0A096LNJ9 63 aa13.32□□□□□ -0.28
CLN3-258ENST00000637184 BTF3P20290 206 aaKnown RBP13.32□□□□□ -0.28
CLN3-258ENST00000637184 COTL1Q14019 142 aa13.32□□□□□ -0.28
CLN3-258ENST00000637184 LEPROTL1O95214 131 aa13.31□□□□□ -0.28
CLN3-258ENST00000637184 LINC00694P0DN24 101 aa13.31□□□□□ -0.28
CLN3-258ENST00000637184 DEFB131BA0A096LNP1 70 aa13.3□□□□□ -0.28
CLN3-258ENST00000637184 G0S2P27469 103 aa13.3□□□□□ -0.28
CLN3-258ENST00000637184 PRKDCP78527 4128 aaKnown RBP13.29□□□□□ -0.28
CLN3-258ENST00000637184 OR10D4PQ8NGN7 298 aa13.29□□□□□ -0.28
CLN3-258ENST00000637184 ATP6V0E2Q8NHE4 81 aa13.29□□□□□ -0.28
CLN3-258ENST00000637184 AKR1D1P51857 326 aa13.28□□□□□ -0.28
CLN3-258ENST00000637184 HSPB8Q9UJY1 196 aa13.28□□□□□ -0.28
CLN3-258ENST00000637184 TRAV10A0A0B4J240 114 aa13.27□□□□□ -0.28
CLN3-258ENST00000637184 C2orf66Q6UXQ4 117 aa13.27□□□□□ -0.28
CLN3-258ENST00000637184 H3BNG1 76 aa13.27□□□□□ -0.29
CLN3-258ENST00000637184 MRPL23Q16540 153 aaKnown RBP13.27□□□□□ -0.29
CLN3-258ENST00000637184 TOMM6Q96B49 74 aa13.27□□□□□ -0.29
CLN3-258ENST00000637184 GTSF1LQ9H1H1 148 aa13.27□□□□□ -0.29
CLN3-258ENST00000637184 CYSLTR1Q9Y271 337 aa13.27□□□□□ -0.29
CLN3-258ENST00000637184 ICOSQ9Y6W8 199 aa13.27□□□□□ -0.29
CLN3-258ENST00000637184 C20orf203Q8NBC4 194 aa13.26□□□□□ -0.29
CLN3-258ENST00000637184 STAB2Q8WWQ8 2551 aa13.26□□□□□ -0.29
CLN3-258ENST00000637184 A0A096LPF7 62 aa13.25□□□□□ -0.29
CLN3-258ENST00000637184 LINC01549A6NIU2 74 aa13.25□□□□□ -0.29
CLN3-258ENST00000637184 TMEM97Q5BJF2 176 aa13.25□□□□□ -0.29
CLN3-258ENST00000637184 NTM-AS1Q6ZSK4 140 aa13.25□□□□□ -0.29
CLN3-258ENST00000637184 LINC00173Q6ZV60 143 aa13.25□□□□□ -0.29
CLN3-258ENST00000637184 SH2D6Q7Z4S9 175 aa13.25□□□□□ -0.29
CLN3-258ENST00000637184 CHCHD7Q9BUK0 85 aa13.25□□□□□ -0.29
CLN3-258ENST00000637184 RPL39P62891 51 aaKnown RBP13.24□□□□□ -0.29
CLN3-258ENST00000637184 KRTDAPP60985 99 aa13.23□□□□□ -0.29
CLN3-258ENST00000637184 SCGB3A1Q96QR1 104 aa13.23□□□□□ -0.29
CLN3-258ENST00000637184 TRBV25-1A0A075B6N4 114 aa13.22□□□□□ -0.29
CLN3-258ENST00000637184 ATP5LO75964 103 aa13.22□□□□□ -0.29
CLN3-258ENST00000637184 MAP1LC3CQ9BXW4 147 aa13.22□□□□□ -0.29
CLN3-258ENST00000637184 TRBV6-8A0A0A6YYG3 113 aa13.22□□□□□ -0.29
CLN3-258ENST00000637184 IFI27L1Q96BM0 104 aa13.22□□□□□ -0.29
CLN3-258ENST00000637184 C3orf79P0CE67 100 aa13.21□□□□□ -0.29
CLN3-258ENST00000637184 ERASQ7Z444 233 aa13.21□□□□□ -0.29
CLN3-258ENST00000637184 IGKV2D-29A0A075B6S2 120 aaPredicted RBP13.2□□□□□ -0.3
CLN3-258ENST00000637184 IGKV2-29A2NJV5 120 aaPredicted RBP13.2□□□□□ -0.3
CLN3-258ENST00000637184 TMEM243Q9BU79 118 aa13.2□□□□□ -0.3
CLN3-258ENST00000637184 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP13.2□□□□□ -0.3
CLN3-258ENST00000637184 IGIPA6NJ69 53 aa13.18□□□□□ -0.3
CLN3-258ENST00000637184 SYS1-DBNDD2H3BUS1 97 aa13.18□□□□□ -0.3
CLN3-258ENST00000637184 TIMM17AQ99595 171 aa13.18□□□□□ -0.3
CLN3-258ENST00000637184 H0Y8G0 127 aa13.17□□□□□ -0.3
CLN3-258ENST00000637184 UBE2L6O14933 153 aa13.17□□□□□ -0.3
CLN3-258ENST00000637184 Q6ZN92 141 aa13.17□□□□□ -0.3
CLN3-258ENST00000637184 TMEM141Q96I45 108 aa13.17□□□□□ -0.3
CLN3-258ENST00000637184 PRSS1P07477 247 aa13.17□□□□□ -0.3
CLN3-258ENST00000637184 PYGO1Q9Y3Y4 419 aa13.17□□□□□ -0.3
CLN3-258ENST00000637184 C15orf53Q8NAA6 179 aa13.16□□□□□ -0.3
CLN3-258ENST00000637184 CHCHD5Q9BSY4 110 aa13.16□□□□□ -0.3
CLN3-258ENST00000637184 UBE2D4Q9Y2X8 147 aa13.16□□□□□ -0.3
CLN3-258ENST00000637184 FBN3Q75N90 2809 aa13.16□□□□□ -0.3
CLN3-258ENST00000637184 H7C423 109 aa13.15□□□□□ -0.3
CLN3-258ENST00000637184 SMAGPQ0VAQ4 97 aa13.15□□□□□ -0.3
CLN3-258ENST00000637184 LYPD5Q6UWN5 251 aa13.15□□□□□ -0.3
CLN3-258ENST00000637184 SPANXA1Q9NS26 97 aa13.15□□□□□ -0.3
CLN3-258ENST00000637184 SCGB1D1O95968 90 aa13.15□□□□□ -0.31
CLN3-258ENST00000637184 JOSD1Q15040 202 aaPredicted RBP13.15□□□□□ -0.31
CLN3-258ENST00000637184 CEMP1Q6PRD7 247 aaPredicted RBP13.15□□□□□ -0.31
CLN3-258ENST00000637184 PET117Q6UWS5 81 aa13.15□□□□□ -0.31
CLN3-258ENST00000637184 IGLL5B9A064 214 aa13.14□□□□□ -0.31
CLN3-258ENST00000637184 FGF6P10767 208 aa13.14□□□□□ -0.31
CLN3-258ENST00000637184 PYY3Q5JQD4 70 aa13.14□□□□□ -0.31
CLN3-258ENST00000637184 DGAT2L7PQ6IED9 249 aa13.14□□□□□ -0.31
CLN3-258ENST00000637184 SPATA12Q7Z6I5 190 aa13.14□□□□□ -0.31
CLN3-258ENST00000637184 TIMM21Q9BVV7 248 aa13.14□□□□□ -0.31
CLN3-258ENST00000637184 GAGE6Q13070 117 aa13.13□□□□□ -0.31
CLN3-258ENST00000637184 LELP1Q5T871 98 aa13.13□□□□□ -0.31
CLN3-258ENST00000637184 AMMECR1LQ6DCA0 310 aa13.13□□□□□ -0.31
CLN3-258ENST00000637184 MRPL52Q86TS9 123 aaKnown RBP13.13□□□□□ -0.31
CLN3-258ENST00000637184 BAALCQ8WXS3 180 aa13.13□□□□□ -0.31
CLN3-258ENST00000637184 OPRPNQ99935 248 aaPredicted RBP13.13□□□□□ -0.31
CLN3-258ENST00000637184 IGLV4-3A0A075B6K6 122 aa13.12□□□□□ -0.31
CLN3-258ENST00000637184 TIRAPP58753 221 aa13.12□□□□□ -0.31
CLN3-258ENST00000637184 PAPPA-AS1Q5QFB9 102 aa13.12□□□□□ -0.31
CLN3-258ENST00000637184 C20orf202A1L168 122 aa13.12□□□□□ -0.31
CLN3-258ENST00000637184 NPSP0C0P6 89 aa13.12□□□□□ -0.31
CLN3-258ENST00000637184 CSDC2Q9Y534 153 aaKnown RBP13.12□□□□□ -0.31
CLN3-258ENST00000637184 TMEM101Q96IK0 257 aa13.11□□□□□ -0.31
CLN3-258ENST00000637184 TMEM262E9PQX1 116 aa13.1□□□□□ -0.31
CLN3-258ENST00000637184 ZNF25P17030 456 aaPredicted RBP13.1□□□□□ -0.31
CLN3-258ENST00000637184 Q8N976 141 aa13.1□□□□□ -0.31
CLN3-258ENST00000637184 TRAV12-1A0A0B4J245 112 aa13.09□□□□□ -0.31
CLN3-258ENST00000637184 SMIM6P0DI80 62 aa13.09□□□□□ -0.31
CLN3-258ENST00000637184 PMVKQ15126 192 aa13.09□□□□□ -0.31
CLN3-258ENST00000637184 LINC01545Q5VT33 79 aa13.09□□□□□ -0.31
CLN3-258ENST00000637184 LGALS9CQ6DKI2 356 aa13.09□□□□□ -0.31
CLN3-258ENST00000637184 OR5A1Q8NGJ0 315 aa13.09□□□□□ -0.31
CLN3-258ENST00000637184 VCX2Q9H322 139 aa13.09□□□□□ -0.31
CLN3-258ENST00000637184 MRPS36P82909 103 aaKnown RBP13.09□□□□□ -0.31
CLN3-258ENST00000637184 ESRGQ1W209 222 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 85.7 ms