RNA–Protein interactions for RNA: ENST00000626109.1

LINC00538-201, long intergenic non-protein coding RNA 538, humanhuman

BASIC

Gene LINC00538, Length 1,906 nt, Biotype lincRNA.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00538-201ENST00000626109 NF1P21359 2839 aa8.61□□□□□ -1.03
LINC00538-201ENST00000626109 SETD2Q9BYW2 2564 aaPredicted RBP8.61□□□□□ -1.03
LINC00538-201ENST00000626109 Q8TAT8 98 aa8.6□□□□□ -1.03
LINC00538-201ENST00000626109 IFI27L1Q96BM0 104 aa8.6□□□□□ -1.03
LINC00538-201ENST00000626109 NXT2Q9NPJ8 142 aaKnown RBP8.6□□□□□ -1.03
LINC00538-201ENST00000626109 IGHV3-11P01762 117 aa8.6□□□□□ -1.03
LINC00538-201ENST00000626109 ZNF80P51504 273 aaPredicted RBP8.6□□□□□ -1.03
LINC00538-201ENST00000626109 KRTAP10-3P60369 221 aa8.6□□□□□ -1.03
LINC00538-201ENST00000626109 SEC11AP67812 179 aa8.6□□□□□ -1.03
LINC00538-201ENST00000626109 PRB4P10163 310 aaPredicted RBP8.59□□□□□ -1.03
LINC00538-201ENST00000626109 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa8.59□□□□□ -1.03
LINC00538-201ENST00000626109 TRPT1Q86TN4 253 aaKnown RBP8.59□□□□□ -1.03
LINC00538-201ENST00000626109 C3orf56Q8N813 242 aa8.59□□□□□ -1.03
LINC00538-201ENST00000626109 KLHL30-AS1Q8NEE0 82 aa8.59□□□□□ -1.03
LINC00538-201ENST00000626109 FAM236AA0A1B0GUQ0 79 aa8.58□□□□□ -1.04
LINC00538-201ENST00000626109 FAM236BA0A1B0GV22 79 aa8.58□□□□□ -1.04
LINC00538-201ENST00000626109 NPYP01303 97 aa8.58□□□□□ -1.04
LINC00538-201ENST00000626109 IGFL4Q6B9Z1 124 aa8.58□□□□□ -1.04
LINC00538-201ENST00000626109 CLEC19AQ6UXS0 136 aa8.58□□□□□ -1.04
LINC00538-201ENST00000626109 NDUFA11Q86Y39 141 aa8.58□□□□□ -1.04
LINC00538-201ENST00000626109 C4orf3Q8WVX3 66 aa8.58□□□□□ -1.04
LINC00538-201ENST00000626109 A0A096LNJ9 63 aa8.58□□□□□ -1.04
LINC00538-201ENST00000626109 IGHV3-35A0A0C4DH35 117 aa8.58□□□□□ -1.04
LINC00538-201ENST00000626109 MUC21A0A0G2JKD1 596 aa8.58□□□□□ -1.04
LINC00538-201ENST00000626109 MUC21A0A140T8X8 626 aa8.58□□□□□ -1.04
LINC00538-201ENST00000626109 LINC01546A6NGU7 62 aa8.58□□□□□ -1.04
LINC00538-201ENST00000626109 TAX1BP3O14907 124 aa8.58□□□□□ -1.04
LINC00538-201ENST00000626109 NCR2O95944 276 aa8.58□□□□□ -1.04
LINC00538-201ENST00000626109 HLA-DMBP28068 263 aa8.58□□□□□ -1.04
LINC00538-201ENST00000626109 ERCC8Q13216 396 aa8.58□□□□□ -1.04
LINC00538-201ENST00000626109 MUC21Q5SSG8 566 aa8.58□□□□□ -1.04
LINC00538-201ENST00000626109 IGHV3OR16-8A0A075B7F1 116 aa8.57□□□□□ -1.04
LINC00538-201ENST00000626109 FCER1GP30273 86 aa8.57□□□□□ -1.04
LINC00538-201ENST00000626109 LINC01587Q99440 93 aa8.57□□□□□ -1.04
LINC00538-201ENST00000626109 TRAV8-6A0A0B4J262 113 aa8.56□□□□□ -1.04
LINC00538-201ENST00000626109 NDUFV3P56181 108 aaKnown RBP8.56□□□□□ -1.04
LINC00538-201ENST00000626109 SCGB1D4Q6XE38 83 aa8.56□□□□□ -1.04
LINC00538-201ENST00000626109 C18orf65Q6ZTR6 163 aa8.56□□□□□ -1.04
LINC00538-201ENST00000626109 RNF185Q96GF1 192 aa8.56□□□□□ -1.04
LINC00538-201ENST00000626109 DAD1P61803 113 aa8.56□□□□□ -1.04
LINC00538-201ENST00000626109 C9orf47Q6ZRZ4 202 aa8.56□□□□□ -1.04
LINC00538-201ENST00000626109 AGPAT4-IT1Q9H0P7 198 aa8.56□□□□□ -1.04
LINC00538-201ENST00000626109 LENEPQ9Y5L5 61 aa8.56□□□□□ -1.04
LINC00538-201ENST00000626109 ATRQ13535 2644 aa8.55□□□□□ -1.04
LINC00538-201ENST00000626109 SRSF9Q13242 221 aaKnown RBP eCLIP8.55□□□□□ -1.04
LINC00538-201ENST00000626109 FAM222AQ5U5X8 452 aa8.55□□□□□ -1.04
LINC00538-201ENST00000626109 AMMECR1LQ6DCA0 310 aa8.55□□□□□ -1.04
LINC00538-201ENST00000626109 Q6ZRU5 148 aa8.55□□□□□ -1.04
LINC00538-201ENST00000626109 RNF182Q8N6D2 247 aa8.55□□□□□ -1.04
LINC00538-201ENST00000626109 PRAC2D3DTV9 90 aa8.54□□□□□ -1.04
LINC00538-201ENST00000626109 TRBV12-3P01733 135 aa8.54□□□□□ -1.04
LINC00538-201ENST00000626109 DEFB136Q30KP8 78 aa8.54□□□□□ -1.04
LINC00538-201ENST00000626109 C2orf91Q6ZV80 131 aa8.54□□□□□ -1.04
LINC00538-201ENST00000626109 Q8N8P6 123 aa8.54□□□□□ -1.04
LINC00538-201ENST00000626109 NEXN-AS1Q8NBZ9 246 aa8.54□□□□□ -1.04
LINC00538-201ENST00000626109 MSRB1Q9NZV6 116 aa8.54□□□□□ -1.04
LINC00538-201ENST00000626109 IGHV4OR15-8A0A075B7B6 117 aa8.54□□□□□ -1.04
LINC00538-201ENST00000626109 A0A087WW49 117 aa8.54□□□□□ -1.04
LINC00538-201ENST00000626109 TRAV4A0A0B4J268 109 aa8.54□□□□□ -1.04
LINC00538-201ENST00000626109 IGHV3-66A0A0C4DH42 116 aa8.54□□□□□ -1.04
LINC00538-201ENST00000626109 NDUFS5O43920 106 aa8.54□□□□□ -1.04
LINC00538-201ENST00000626109 ZNF575Q86XF7 245 aa8.54□□□□□ -1.04
LINC00538-201ENST00000626109 TP73-AS1Q9UF72 201 aa8.54□□□□□ -1.04
LINC00538-201ENST00000626109 PYGO1Q9Y3Y4 419 aa8.54□□□□□ -1.04
LINC00538-201ENST00000626109 IGHV4-4A0A075B6R2 117 aa8.53□□□□□ -1.04
LINC00538-201ENST00000626109 PRSS1P07477 247 aa8.53□□□□□ -1.04
LINC00538-201ENST00000626109 KRTAP21-3Q3LHN1 58 aa8.53□□□□□ -1.04
LINC00538-201ENST00000626109 SPANXN1Q5VSR9 72 aa8.53□□□□□ -1.04
LINC00538-201ENST00000626109 IGKV3D-20A0A0C4DH25 116 aa8.52□□□□□ -1.04
LINC00538-201ENST00000626109 H3BRM9 83 aa8.52□□□□□ -1.04
LINC00538-201ENST00000626109 FXYD7P58549 80 aa8.52□□□□□ -1.04
LINC00538-201ENST00000626109 CDK2AP2O75956 126 aa8.52□□□□□ -1.05
LINC00538-201ENST00000626109 NMUP48645 174 aa8.52□□□□□ -1.05
LINC00538-201ENST00000626109 FBN1P35555 2871 aaKnown RBP8.52□□□□□ -1.05
LINC00538-201ENST00000626109 IGHV3OR16-13A0A075B7E8 117 aa8.51□□□□□ -1.05
LINC00538-201ENST00000626109 IGHV3-74A0A0B4J1X5 117 aa8.51□□□□□ -1.05
LINC00538-201ENST00000626109 NDUFA4O00483 81 aa8.51□□□□□ -1.05
LINC00538-201ENST00000626109 OR10J6PQ8NGY7 276 aa8.51□□□□□ -1.05
LINC00538-201ENST00000626109 C18orf15Q96N68 181 aa8.51□□□□□ -1.05
LINC00538-201ENST00000626109 MDFICQ9P1T7 246 aa8.51□□□□□ -1.05
LINC00538-201ENST00000626109 IGKCP01834 107 aa8.5□□□□□ -1.05
LINC00538-201ENST00000626109 UNQ9165/PRO28630Q6UXU0 137 aa8.5□□□□□ -1.05
LINC00538-201ENST00000626109 DKK2Q9UBU2 259 aa8.5□□□□□ -1.05
LINC00538-201ENST00000626109 IGHV7-4-1A0A0J9YVY3 117 aa8.5□□□□□ -1.05
LINC00538-201ENST00000626109 C9orf118A6NHY6 69 aa8.5□□□□□ -1.05
LINC00538-201ENST00000626109 IFITM1P13164 125 aa8.5□□□□□ -1.05
LINC00538-201ENST00000626109 SLURP1P55000 103 aa8.5□□□□□ -1.05
LINC00538-201ENST00000626109 HERVK_113P63121 156 aa8.5□□□□□ -1.05
LINC00538-201ENST00000626109 FAM19A3Q7Z5A8 133 aa8.5□□□□□ -1.05
LINC00538-201ENST00000626109 GPHB5Q86YW7 130 aa8.5□□□□□ -1.05
LINC00538-201ENST00000626109 FAM218AQ96MZ4 157 aa8.5□□□□□ -1.05
LINC00538-201ENST00000626109 IGHV3-49A0A0A0MS15 119 aa8.49□□□□□ -1.05
LINC00538-201ENST00000626109 TRAV21A0A0B4J279 112 aa8.49□□□□□ -1.05
LINC00538-201ENST00000626109 H0Y9J4 135 aa8.49□□□□□ -1.05
LINC00538-201ENST00000626109 BRK1Q8WUW1 75 aa8.49□□□□□ -1.05
LINC00538-201ENST00000626109 HIGD1BQ9P298 99 aa8.49□□□□□ -1.05
LINC00538-201ENST00000626109 K7EMI3 77 aa8.48□□□□□ -1.05
LINC00538-201ENST00000626109 HLA-DRB4P13762 266 aa8.48□□□□□ -1.05
LINC00538-201ENST00000626109 SYNJ2BPP57105 145 aa8.48□□□□□ -1.05
LINC00538-201ENST00000626109 C11orf21Q9P2W6 132 aa8.48□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 62.7 ms