RNA–Protein interactions for RNA: ENST00000599144.5

IRF3-222, Transcript of interferon regulatory factor 3, human

TSL 1 (best) BASIC

Gene IRF3, Length 1,117 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
IRF3-222	ENST00000599144	DPH3P1	Q9H4G8	78 aa		12.09	□□□□□ -0.47
IRF3-222	ENST00000599144	PLAC8	Q9NZF1	115 aa		12.09	□□□□□ -0.47
IRF3-222	ENST00000599144	MAJIN	Q3KP22	176 aa		12.08	□□□□□ -0.48
IRF3-222	ENST00000599144	MBD3L1	Q8WWY6	194 aa		12.08	□□□□□ -0.48
IRF3-222	ENST00000599144	RNF185	Q96GF1	192 aa		12.08	□□□□□ -0.48
IRF3-222	ENST00000599144	TEX46	H3BTG2	121 aa		12.07	□□□□□ -0.48
IRF3-222	ENST00000599144	H2AFB1	P0C5Y9	115 aa		12.07	□□□□□ -0.48
IRF3-222	ENST00000599144	IGLC6	P0CF74	106 aa		12.07	□□□□□ -0.48
IRF3-222	ENST00000599144	RPL35	P42766	123 aa	Known RBP	12.07	□□□□□ -0.48
IRF3-222	ENST00000599144	ALKAL2	Q6UX46	152 aa		12.07	□□□□□ -0.48
IRF3-222	ENST00000599144	FER1L6-AS1	Q8NA97	138 aa		12.07	□□□□□ -0.48
IRF3-222	ENST00000599144	C7orf33	Q8WU49	177 aa		12.07	□□□□□ -0.48
IRF3-222	ENST00000599144	OR2D3	Q8NGH3	330 aa		12.06	□□□□□ -0.48
IRF3-222	ENST00000599144		A0A1B0GUV1	79 aa		12.05	□□□□□ -0.48
IRF3-222	ENST00000599144	PRR3	P79522	188 aa	Known RBP	12.05	□□□□□ -0.48
IRF3-222	ENST00000599144	RASL11A	Q6T310	242 aa		12.05	□□□□□ -0.48
IRF3-222	ENST00000599144	LINC01600	Q96MT4	127 aa		12.05	□□□□□ -0.48
IRF3-222	ENST00000599144		H7C1H1	209 aa		12.04	□□□□□ -0.48
IRF3-222	ENST00000599144	UBE2L6	O14933	153 aa		12.04	□□□□□ -0.48
IRF3-222	ENST00000599144	CCL20	P78556	96 aa		12.04	□□□□□ -0.48
IRF3-222	ENST00000599144	WDR73	Q6P4I2	378 aa		12.04	□□□□□ -0.48
IRF3-222	ENST00000599144	TRAV1-1	A0A0B4J248	108 aa		12.03	□□□□□ -0.48
IRF3-222	ENST00000599144	AMT	P48728	403 aa		12.03	□□□□□ -0.48
IRF3-222	ENST00000599144	BLOC1S1	P78537	153 aa		12.03	□□□□□ -0.48
IRF3-222	ENST00000599144	CENPW	Q5EE01	88 aa		12.03	□□□□□ -0.48
IRF3-222	ENST00000599144	STPG4	Q8N801	248 aa		12.03	□□□□□ -0.48
IRF3-222	ENST00000599144	RAB19	A4D1S5	217 aa		12.02	□□□□□ -0.49
IRF3-222	ENST00000599144	RPS10	P46783	165 aa	Known RBP	12.02	□□□□□ -0.49
IRF3-222	ENST00000599144	TEX261	Q6UWH6	196 aa		12.02	□□□□□ -0.49
IRF3-222	ENST00000599144		A0A096LNI7	61 aa		12.01	□□□□□ -0.49
IRF3-222	ENST00000599144	NDUFS6	O75380	124 aa	Known RBP	12.01	□□□□□ -0.49
IRF3-222	ENST00000599144	LYZL1	Q6UWQ5	148 aa		12.01	□□□□□ -0.49
IRF3-222	ENST00000599144	NIT2	Q9NQR4	276 aa		12.01	□□□□□ -0.49
IRF3-222	ENST00000599144	TRAV26-2	A0A0B4J265	109 aa		12	□□□□□ -0.49
IRF3-222	ENST00000599144	C19orf71	A6NCJ1	209 aa		12	□□□□□ -0.49
IRF3-222	ENST00000599144	CACNG7	P62955	275 aa		12	□□□□□ -0.49
IRF3-222	ENST00000599144	COTL1	Q14019	142 aa		12	□□□□□ -0.49
IRF3-222	ENST00000599144	CHCHD10	Q8WYQ3	142 aa	Predicted RBP	12	□□□□□ -0.49
IRF3-222	ENST00000599144	LINC00526	Q96FQ7	95 aa		12	□□□□□ -0.49
IRF3-222	ENST00000599144	PGLYRP4	Q96LB8	373 aa		12	□□□□□ -0.49
IRF3-222	ENST00000599144	GNG13	Q9P2W3	67 aa		12	□□□□□ -0.49
IRF3-222	ENST00000599144	IGKV2D-29	A0A075B6S2	120 aa	Predicted RBP	11.99	□□□□□ -0.49
IRF3-222	ENST00000599144	IGKV2-29	A2NJV5	120 aa	Predicted RBP	11.99	□□□□□ -0.49
IRF3-222	ENST00000599144	NTF3	P20783	257 aa		11.98	□□□□□ -0.49
IRF3-222	ENST00000599144	RPS20	P60866	119 aa	Known RBP	11.98	□□□□□ -0.49
IRF3-222	ENST00000599144	CFAP161	Q6P656	301 aa		11.98	□□□□□ -0.49
IRF3-222	ENST00000599144	C11orf52	Q96A22	123 aa		11.98	□□□□□ -0.49
IRF3-222	ENST00000599144		A0A0J9YXV3	536 aa		11.97	□□□□□ -0.49
IRF3-222	ENST00000599144	MANBAL	Q9NQG1	85 aa		11.97	□□□□□ -0.49
IRF3-222	ENST00000599144	IFNA1	P01562	189 aa		11.96	□□□□□ -0.49
IRF3-222	ENST00000599144	TRGC1	P0CF51	173 aa		11.96	□□□□□ -0.49
IRF3-222	ENST00000599144	KRTAP10-8	P60410	259 aa		11.96	□□□□□ -0.49
IRF3-222	ENST00000599144	RNASEK	Q6P5S7	137 aa	Known RBP	11.96	□□□□□ -0.49
IRF3-222	ENST00000599144	GATD1	Q8NB37	220 aa		11.96	□□□□□ -0.49
IRF3-222	ENST00000599144	RPL39L	Q96EH5	51 aa	Known RBP	11.96	□□□□□ -0.49
IRF3-222	ENST00000599144	AMMECR1L	Q6DCA0	310 aa		11.95	□□□□□ -0.5
IRF3-222	ENST00000599144	GVQW2	A0A096LPI5	108 aa	Predicted RBP	11.94	□□□□□ -0.5
IRF3-222	ENST00000599144	TAGLN2	P37802	199 aa	Known RBP	11.94	□□□□□ -0.5
IRF3-222	ENST00000599144	GNG4	P50150	75 aa		11.94	□□□□□ -0.5
IRF3-222	ENST00000599144	FOXA3	P55318	350 aa	Predicted RBP	11.94	□□□□□ -0.5
IRF3-222	ENST00000599144	FOXI1	Q12951	378 aa		11.94	□□□□□ -0.5
IRF3-222	ENST00000599144	TRBV20OR9-2	A0A075B6H5	130 aa		11.93	□□□□□ -0.5
IRF3-222	ENST00000599144		F2Z2F3	143 aa		11.93	□□□□□ -0.5
IRF3-222	ENST00000599144	RAB14	P61106	215 aa		11.93	□□□□□ -0.5
IRF3-222	ENST00000599144	TWIST1	Q15672	202 aa		11.93	□□□□□ -0.5
IRF3-222	ENST00000599144	XCL1	P47992	114 aa		11.92	□□□□□ -0.5
IRF3-222	ENST00000599144	GAS8-AS1	O95177	125 aa		11.91	□□□□□ -0.5
IRF3-222	ENST00000599144	BCL2	P10415	239 aa		11.91	□□□□□ -0.5
IRF3-222	ENST00000599144	FGF6	P10767	208 aa		11.91	□□□□□ -0.5
IRF3-222	ENST00000599144	SPINK6	Q6UWN8	80 aa		11.91	□□□□□ -0.5
IRF3-222	ENST00000599144	NUDT10	Q8NFP7	164 aa		11.91	□□□□□ -0.5
IRF3-222	ENST00000599144	NUDT11	Q96G61	164 aa		11.91	□□□□□ -0.5
IRF3-222	ENST00000599144	XKRY2	A2RUG3	117 aa		11.9	□□□□□ -0.5
IRF3-222	ENST00000599144	CTRL	P40313	264 aa		11.9	□□□□□ -0.5
IRF3-222	ENST00000599144	MED9	Q9NWA0	146 aa		11.9	□□□□□ -0.5
IRF3-222	ENST00000599144	APCS	P02743	223 aa		11.89	□□□□□ -0.51
IRF3-222	ENST00000599144	MEF2B	Q02080	365 aa	Predicted RBP	11.89	□□□□□ -0.51
IRF3-222	ENST00000599144	SRSF9	Q13242	221 aa	Known RBP eCLIP	11.89	□□□□□ -0.51
IRF3-222	ENST00000599144	REG3G	Q6UW15	175 aa		11.89	□□□□□ -0.51
IRF3-222	ENST00000599144	CCL25	O15444	150 aa		11.88	□□□□□ -0.51
IRF3-222	ENST00000599144	PDE6D	O43924	150 aa		11.88	□□□□□ -0.51
IRF3-222	ENST00000599144	CARD19	Q96LW7	228 aa		11.88	□□□□□ -0.51
IRF3-222	ENST00000599144	RNASE7	Q9H1E1	156 aa	Known RBP	11.88	□□□□□ -0.51
IRF3-222	ENST00000599144	LPA	P08519	4548 aa		11.88	□□□□□ -0.51
IRF3-222	ENST00000599144	FAM231B	A6NCW3	169 aa		11.86	□□□□□ -0.51
IRF3-222	ENST00000599144	SDHAF1	A6NFY7	115 aa		11.86	□□□□□ -0.51
IRF3-222	ENST00000599144	IFITM2	Q01629	132 aa		11.86	□□□□□ -0.51
IRF3-222	ENST00000599144	OR5A1	Q8NGJ0	315 aa		11.86	□□□□□ -0.51
IRF3-222	ENST00000599144	EIF5A2	Q9GZV4	153 aa	Known RBP	11.86	□□□□□ -0.51
IRF3-222	ENST00000599144	LINC00959	A0A1B0GUT2	108 aa		11.85	□□□□□ -0.51
IRF3-222	ENST00000599144	GAGE2B	Q13066	116 aa		11.85	□□□□□ -0.51
IRF3-222	ENST00000599144		Q6ZRP5	223 aa		11.85	□□□□□ -0.51
IRF3-222	ENST00000599144	FAM210A	Q96ND0	272 aa		11.85	□□□□□ -0.51
IRF3-222	ENST00000599144	CNFN	Q9BYD5	112 aa		11.85	□□□□□ -0.51
IRF3-222	ENST00000599144	RPP21	Q9H633	154 aa	Known RBP	11.85	□□□□□ -0.51
IRF3-222	ENST00000599144	IGHV1-58	A0A0C4DH39	117 aa		11.84	□□□□□ -0.51
IRF3-222	ENST00000599144		K7EN84	100 aa		11.84	□□□□□ -0.51
IRF3-222	ENST00000599144	NCR2	O95944	276 aa		11.84	□□□□□ -0.51
IRF3-222	ENST00000599144	SMIM12	Q96EX1	92 aa		11.84	□□□□□ -0.51
IRF3-222	ENST00000599144		A0A1W2PNN7	141 aa		11.83	□□□□□ -0.52

Retrieved 100 of 20,778 RNA–protein pairs in 61.2 ms