RNA–Protein interactions for RNA: ENST00000598201.5

SHKBP1-216, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 2,069 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-216ENST00000598201 IGKV2D-26A0A0A0MRZ7 120 aa12.24□□□□□ -0.45
SHKBP1-216ENST00000598201 IGHV3-53P01767 116 aa12.24□□□□□ -0.45
SHKBP1-216ENST00000598201 OR4C5Q8NGB2 326 aa12.24□□□□□ -0.45
SHKBP1-216ENST00000598201 C1QTNF4Q9BXJ3 329 aa12.24□□□□□ -0.45
SHKBP1-216ENST00000598201 PRSS29PA6NIE9 313 aa12.23□□□□□ -0.45
SHKBP1-216ENST00000598201 F8VRH5 84 aa12.23□□□□□ -0.45
SHKBP1-216ENST00000598201 HINT1P49773 126 aaPredicted RBP12.23□□□□□ -0.45
SHKBP1-216ENST00000598201 RHOHQ15669 191 aa12.23□□□□□ -0.45
SHKBP1-216ENST00000598201 ZC2HC1BQ5TFG8 222 aa12.23□□□□□ -0.45
SHKBP1-216ENST00000598201 GTSCR1Q86UQ5 136 aa12.23□□□□□ -0.45
SHKBP1-216ENST00000598201 PCP2Q8IVA1 136 aa12.23□□□□□ -0.45
SHKBP1-216ENST00000598201 NOP10Q9NPE3 64 aaKnown RBP12.23□□□□□ -0.45
SHKBP1-216ENST00000598201 NMUP48645 174 aa12.23□□□□□ -0.45
SHKBP1-216ENST00000598201 C2orf91Q6ZV80 131 aa12.23□□□□□ -0.45
SHKBP1-216ENST00000598201 TNFRSF18Q9Y5U5 241 aa12.23□□□□□ -0.45
SHKBP1-216ENST00000598201 BOD1L2Q8IYS8 172 aa12.22□□□□□ -0.45
SHKBP1-216ENST00000598201 ZNF479Q96JC4 524 aa12.22□□□□□ -0.45
SHKBP1-216ENST00000598201 DNHD1Q96M86 4753 aa12.22□□□□□ -0.45
SHKBP1-216ENST00000598201 PLNP26678 52 aa12.21□□□□□ -0.45
SHKBP1-216ENST00000598201 DAZ2Q13117 558 aaKnown RBP12.21□□□□□ -0.45
SHKBP1-216ENST00000598201 OCIAD2Q56VL3 154 aa12.21□□□□□ -0.45
SHKBP1-216ENST00000598201 C20orf203Q8NBC4 194 aa12.21□□□□□ -0.45
SHKBP1-216ENST00000598201 C16orf74Q96GX8 76 aa12.21□□□□□ -0.45
SHKBP1-216ENST00000598201 TIMM17AQ99595 171 aa12.21□□□□□ -0.45
SHKBP1-216ENST00000598201 LINC01549A6NIU2 74 aa12.2□□□□□ -0.46
SHKBP1-216ENST00000598201 TMEM141Q96I45 108 aa12.2□□□□□ -0.46
SHKBP1-216ENST00000598201 TTTY13Q9BZ97 58 aa12.2□□□□□ -0.46
SHKBP1-216ENST00000598201 MPV17L2Q567V2 206 aa12.2□□□□□ -0.46
SHKBP1-216ENST00000598201 OPRPNQ99935 248 aaPredicted RBP12.2□□□□□ -0.46
SHKBP1-216ENST00000598201 RRN3P1Q2M238 152 aa12.19□□□□□ -0.46
SHKBP1-216ENST00000598201 WFDC9Q8NEX5 89 aa12.19□□□□□ -0.46
SHKBP1-216ENST00000598201 A6NJY4 79 aa12.18□□□□□ -0.46
SHKBP1-216ENST00000598201 CST9LQ9H4G1 147 aa12.18□□□□□ -0.46
SHKBP1-216ENST00000598201 K7ERU9 68 aa12.18□□□□□ -0.46
SHKBP1-216ENST00000598201 IGLV4-69A0A075B6H9 119 aa12.17□□□□□ -0.46
SHKBP1-216ENST00000598201 TRAV4A0A0B4J268 109 aa12.17□□□□□ -0.46
SHKBP1-216ENST00000598201 IGHV3-38A0A0C4DH36 116 aa12.17□□□□□ -0.46
SHKBP1-216ENST00000598201 PMVKQ15126 192 aa12.17□□□□□ -0.46
SHKBP1-216ENST00000598201 PHLDA1Q8WV24 401 aaPredicted RBP12.17□□□□□ -0.46
SHKBP1-216ENST00000598201 DNAJC30Q96LL9 226 aa12.17□□□□□ -0.46
SHKBP1-216ENST00000598201 PKD1L1Q8TDX9 2849 aa12.17□□□□□ -0.46
SHKBP1-216ENST00000598201 GAGE12BA1L429 117 aa12.17□□□□□ -0.46
SHKBP1-216ENST00000598201 GAGE7O76087 117 aa12.17□□□□□ -0.46
SHKBP1-216ENST00000598201 GAGE12FP0CL80 117 aa12.17□□□□□ -0.46
SHKBP1-216ENST00000598201 GAGE12GP0CL81 117 aa12.17□□□□□ -0.46
SHKBP1-216ENST00000598201 GAGE12IP0CL82 117 aa12.17□□□□□ -0.46
SHKBP1-216ENST00000598201 EMP1P54849 157 aa12.17□□□□□ -0.46
SHKBP1-216ENST00000598201 OVOL2Q9BRP0 275 aa12.17□□□□□ -0.46
SHKBP1-216ENST00000598201 CHCHD7Q9BUK0 85 aa12.15□□□□□ -0.46
SHKBP1-216ENST00000598201 BVES-AS1Q5T3Y7 98 aa12.15□□□□□ -0.46
SHKBP1-216ENST00000598201 C11orf86A6NJI1 115 aa12.14□□□□□ -0.47
SHKBP1-216ENST00000598201 ZNRF2Q8NHG8 242 aa12.14□□□□□ -0.47
SHKBP1-216ENST00000598201 FAM104AQ969W3 186 aa12.14□□□□□ -0.47
SHKBP1-216ENST00000598201 IGLV4-3A0A075B6K6 122 aa12.14□□□□□ -0.47
SHKBP1-216ENST00000598201 TRGV2A0A075B6R0 118 aa12.14□□□□□ -0.47
SHKBP1-216ENST00000598201 CEMP1Q6PRD7 247 aaPredicted RBP12.14□□□□□ -0.47
SHKBP1-216ENST00000598201 MAPKAPK5-AS1Q8N8E1 139 aa12.14□□□□□ -0.47
SHKBP1-216ENST00000598201 SLC25A29Q8N8R3 303 aa12.14□□□□□ -0.47
SHKBP1-216ENST00000598201 K7EQD1 137 aa12.13□□□□□ -0.47
SHKBP1-216ENST00000598201 TRAV8-6A0A0B4J262 113 aa12.12□□□□□ -0.47
SHKBP1-216ENST00000598201 TRBV7-3A0A075B6L6 115 aa12.12□□□□□ -0.47
SHKBP1-216ENST00000598201 SIVA1O15304 175 aa12.12□□□□□ -0.47
SHKBP1-216ENST00000598201 X6R8D5 127 aa12.12□□□□□ -0.47
SHKBP1-216ENST00000598201 IGKV2D-29A0A075B6S2 120 aaPredicted RBP12.11□□□□□ -0.47
SHKBP1-216ENST00000598201 IGKV2-29A2NJV5 120 aaPredicted RBP12.11□□□□□ -0.47
SHKBP1-216ENST00000598201 CFAP161Q6P656 301 aa12.11□□□□□ -0.47
SHKBP1-216ENST00000598201 PYGO1Q9Y3Y4 419 aa12.11□□□□□ -0.47
SHKBP1-216ENST00000598201 TRBV10-1A0A0K0K1A3 114 aa12.1□□□□□ -0.47
SHKBP1-216ENST00000598201 NBEAL2Q6ZNJ1 2754 aa12.1□□□□□ -0.47
SHKBP1-216ENST00000598201 CMYA5Q8N3K9 4069 aa12.1□□□□□ -0.47
SHKBP1-216ENST00000598201 OXLD1Q5BKU9 147 aa12.1□□□□□ -0.47
SHKBP1-216ENST00000598201 TRBV25-1A0A075B6N4 114 aa12.09□□□□□ -0.47
SHKBP1-216ENST00000598201 GAGE12JA6NER3 117 aa12.09□□□□□ -0.47
SHKBP1-216ENST00000598201 WIPF1O43516 503 aa12.09□□□□□ -0.47
SHKBP1-216ENST00000598201 RPL36AP83881 106 aaKnown RBP12.09□□□□□ -0.47
SHKBP1-216ENST00000598201 GAGE4Q13068 117 aa12.09□□□□□ -0.47
SHKBP1-216ENST00000598201 GAGE5Q13069 117 aa12.09□□□□□ -0.47
SHKBP1-216ENST00000598201 GAGE13Q4V321 117 aa12.09□□□□□ -0.47
SHKBP1-216ENST00000598201 TMEM97Q5BJF2 176 aa12.09□□□□□ -0.47
SHKBP1-216ENST00000598201 Q6ZVH6 145 aa12.09□□□□□ -0.47
SHKBP1-216ENST00000598201 RPL36ALQ969Q0 106 aaKnown RBP12.09□□□□□ -0.47
SHKBP1-216ENST00000598201 UBE2D4Q9Y2X8 147 aa12.09□□□□□ -0.47
SHKBP1-216ENST00000598201 E9PLD3 99 aa12.09□□□□□ -0.47
SHKBP1-216ENST00000598201 VAMP3Q15836 100 aa12.09□□□□□ -0.47
SHKBP1-216ENST00000598201 VCX2Q9H322 139 aa12.09□□□□□ -0.47
SHKBP1-216ENST00000598201 LOC100131303A0A0U1RQF7 123 aa12.08□□□□□ -0.48
SHKBP1-216ENST00000598201 RNASE13Q5GAN3 156 aaKnown RBP12.08□□□□□ -0.48
SHKBP1-216ENST00000598201 PAPPA-AS1Q5QFB9 102 aa12.08□□□□□ -0.48
SHKBP1-216ENST00000598201 PRADC1Q9BSG0 188 aa12.08□□□□□ -0.48
SHKBP1-216ENST00000598201 MGAM2Q2M2H8 2515 aa12.08□□□□□ -0.48
SHKBP1-216ENST00000598201 UBE2D3P61077 147 aa12.07□□□□□ -0.48
SHKBP1-216ENST00000598201 UBE2D2P62837 147 aa12.07□□□□□ -0.48
SHKBP1-216ENST00000598201 OR11H2Q8NH07 326 aa12.07□□□□□ -0.48
SHKBP1-216ENST00000598201 AMELXQ99217 191 aa12.07□□□□□ -0.48
SHKBP1-216ENST00000598201 FHL2Q14192 279 aa12.07□□□□□ -0.48
SHKBP1-216ENST00000598201 DEFB135Q30KP9 77 aa12.07□□□□□ -0.48
SHKBP1-216ENST00000598201 NTM-AS1Q6ZSK4 140 aa12.07□□□□□ -0.48
SHKBP1-216ENST00000598201 NFE4Q86UQ8 179 aa12.07□□□□□ -0.48
SHKBP1-216ENST00000598201 G3V4G9 280 aa12.06□□□□□ -0.48
SHKBP1-216ENST00000598201 DEFB130BP0DP73 79 aa12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 845 ms