RNA–Protein interactions for RNA: ENST00000594973.5

SHKBP1-205, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 2,339 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-205ENST00000594973 FAM159AQ6UWV7 190 aa12.67□□□□□ -0.38
SHKBP1-205ENST00000594973 Q6ZSV7 163 aa12.67□□□□□ -0.38
SHKBP1-205ENST00000594973 BAALCQ8WXS3 180 aa12.67□□□□□ -0.38
SHKBP1-205ENST00000594973 YAE1D1Q9NRH1 226 aa12.67□□□□□ -0.38
SHKBP1-205ENST00000594973 TRAV26-2A0A0B4J265 109 aa12.66□□□□□ -0.38
SHKBP1-205ENST00000594973 C9JAW5 83 aa12.66□□□□□ -0.38
SHKBP1-205ENST00000594973 RPL13AP40429 203 aaKnown RBP12.66□□□□□ -0.38
SHKBP1-205ENST00000594973 HERVK_113P61574 105 aa12.66□□□□□ -0.38
SHKBP1-205ENST00000594973 TMEM126AQ9H061 195 aa12.66□□□□□ -0.38
SHKBP1-205ENST00000594973 ESM1Q9NQ30 184 aa12.66□□□□□ -0.38
SHKBP1-205ENST00000594973 MDFICQ9P1T7 246 aa12.66□□□□□ -0.38
SHKBP1-205ENST00000594973 K7EQG2 157 aa12.66□□□□□ -0.38
SHKBP1-205ENST00000594973 KRTAP1-1Q07627 177 aa12.66□□□□□ -0.38
SHKBP1-205ENST00000594973 C11orf44Q8N8P7 122 aa12.66□□□□□ -0.38
SHKBP1-205ENST00000594973 P0DMU3 169 aa12.65□□□□□ -0.38
SHKBP1-205ENST00000594973 FAM231AP0DMU4 169 aa12.65□□□□□ -0.38
SHKBP1-205ENST00000594973 FAM231CP0DMU5 169 aa12.65□□□□□ -0.38
SHKBP1-205ENST00000594973 APRG1Q8IVJ8 170 aa12.65□□□□□ -0.38
SHKBP1-205ENST00000594973 Q8N1Y9 231 aa12.65□□□□□ -0.38
SHKBP1-205ENST00000594973 TMEM86BQ8N661 226 aa12.65□□□□□ -0.38
SHKBP1-205ENST00000594973 SLC25A29Q8N8R3 303 aa12.65□□□□□ -0.38
SHKBP1-205ENST00000594973 KLHL30-AS1Q8NEE0 82 aa12.65□□□□□ -0.39
SHKBP1-205ENST00000594973 ODF3Q96PU9 254 aa12.64□□□□□ -0.39
SHKBP1-205ENST00000594973 PHLDA3Q9Y5J5 127 aa12.64□□□□□ -0.39
SHKBP1-205ENST00000594973 NIPBLQ6KC79 2804 aaeCLIP12.64□□□□□ -0.39
SHKBP1-205ENST00000594973 TRAV8-4A0A0B4J246 113 aa12.63□□□□□ -0.39
SHKBP1-205ENST00000594973 TRAV12-3A0A0B4J271 114 aa12.63□□□□□ -0.39
SHKBP1-205ENST00000594973 KLLNB2CW77 178 aa12.63□□□□□ -0.39
SHKBP1-205ENST00000594973 C4orf3Q8WVX3 66 aa12.63□□□□□ -0.39
SHKBP1-205ENST00000594973 ANK3Q12955 4377 aaKnown RBP12.63□□□□□ -0.39
SHKBP1-205ENST00000594973 TRAV12-2A0A075B6T6 113 aa12.63□□□□□ -0.39
SHKBP1-205ENST00000594973 A0A0J9YX75 114 aa12.63□□□□□ -0.39
SHKBP1-205ENST00000594973 MEIG1Q5JSS6 88 aa12.63□□□□□ -0.39
SHKBP1-205ENST00000594973 SUMO2P61956 95 aaKnown RBP12.62□□□□□ -0.39
SHKBP1-205ENST00000594973 C15orf53Q8NAA6 179 aa12.62□□□□□ -0.39
SHKBP1-205ENST00000594973 C2orf66Q6UXQ4 117 aa12.62□□□□□ -0.39
SHKBP1-205ENST00000594973 NTN5Q8WTR8 489 aaPredicted RBP12.62□□□□□ -0.39
SHKBP1-205ENST00000594973 RNASE3P12724 160 aaKnown RBP12.61□□□□□ -0.39
SHKBP1-205ENST00000594973 A0A1W2PRX2 142 aa12.6□□□□□ -0.39
SHKBP1-205ENST00000594973 ATXN8Q156A1 80 aa12.6□□□□□ -0.39
SHKBP1-205ENST00000594973 SPINK13Q1W4C9 94 aa12.6□□□□□ -0.39
SHKBP1-205ENST00000594973 C14orf178Q8N769 122 aaPredicted RBP12.6□□□□□ -0.39
SHKBP1-205ENST00000594973 IGHV3-33P01772 117 aa12.6□□□□□ -0.39
SHKBP1-205ENST00000594973 WNK1Q9H4A3 2382 aa12.59□□□□□ -0.39
SHKBP1-205ENST00000594973 A0A0B4J2C4 111 aa12.59□□□□□ -0.39
SHKBP1-205ENST00000594973 PEMTQ9UBM1 199 aa12.59□□□□□ -0.39
SHKBP1-205ENST00000594973 LINC01620Q4KN68 170 aa12.59□□□□□ -0.39
SHKBP1-205ENST00000594973 TRPT1Q86TN4 253 aaKnown RBP12.59□□□□□ -0.39
SHKBP1-205ENST00000594973 TRAV2A0A0B4J234 112 aa12.57□□□□□ -0.4
SHKBP1-205ENST00000594973 TRBV10-2A0A0K0K1G8 114 aa12.57□□□□□ -0.4
SHKBP1-205ENST00000594973 C11orf86A6NJI1 115 aa12.57□□□□□ -0.4
SHKBP1-205ENST00000594973 TMEM61Q8N0U2 210 aa12.57□□□□□ -0.4
SHKBP1-205ENST00000594973 TMEM263Q8WUH6 116 aaKnown RBP12.57□□□□□ -0.4
SHKBP1-205ENST00000594973 IGLV4-69A0A075B6H9 119 aa12.57□□□□□ -0.4
SHKBP1-205ENST00000594973 KNCNA6PVL3 124 aa12.57□□□□□ -0.4
SHKBP1-205ENST00000594973 CRYGDP07320 174 aa12.57□□□□□ -0.4
SHKBP1-205ENST00000594973 MGPP08493 103 aa12.57□□□□□ -0.4
SHKBP1-205ENST00000594973 SMR3AQ99954 134 aa12.57□□□□□ -0.4
SHKBP1-205ENST00000594973 PPP1R17O96001 155 aa12.56□□□□□ -0.4
SHKBP1-205ENST00000594973 DEFB131AP59861 70 aa12.56□□□□□ -0.4
SHKBP1-205ENST00000594973 DYNLRB2Q8TF09 96 aa12.56□□□□□ -0.4
SHKBP1-205ENST00000594973 FAM240AA0A1B0GVK7 77 aa12.56□□□□□ -0.4
SHKBP1-205ENST00000594973 H3BMM0 161 aa12.56□□□□□ -0.4
SHKBP1-205ENST00000594973 MED14OSP0DP75 135 aa12.56□□□□□ -0.4
SHKBP1-205ENST00000594973 CD28P10747 220 aa12.56□□□□□ -0.4
SHKBP1-205ENST00000594973 UBE2WQ96B02 151 aa12.56□□□□□ -0.4
SHKBP1-205ENST00000594973 DPH3P1Q9H4G8 78 aa12.56□□□□□ -0.4
SHKBP1-205ENST00000594973 HIVEP2P31629 2446 aa12.55□□□□□ -0.4
SHKBP1-205ENST00000594973 A4D1N5 150 aa12.55□□□□□ -0.4
SHKBP1-205ENST00000594973 DUSP14O95147 198 aaKnown RBP12.55□□□□□ -0.4
SHKBP1-205ENST00000594973 AMELXQ99217 191 aa12.55□□□□□ -0.4
SHKBP1-205ENST00000594973 SPANXDQ9BXN6 97 aa12.55□□□□□ -0.4
SHKBP1-205ENST00000594973 MUC4Q99102 2169 aa12.54□□□□□ -0.4
SHKBP1-205ENST00000594973 TRAV16A0A0A6YYK6 109 aaPredicted RBP12.54□□□□□ -0.4
SHKBP1-205ENST00000594973 PMVKQ15126 192 aa12.54□□□□□ -0.4
SHKBP1-205ENST00000594973 LINC01587Q99440 93 aa12.54□□□□□ -0.4
SHKBP1-205ENST00000594973 JPT2Q9H910 190 aa12.54□□□□□ -0.4
SHKBP1-205ENST00000594973 OTOGQ6ZRI0 2925 aa12.54□□□□□ -0.4
SHKBP1-205ENST00000594973 TRBV7-7A0A0K0K1E9 115 aa12.54□□□□□ -0.4
SHKBP1-205ENST00000594973 TEX49A0A1B0GTD5 131 aa12.54□□□□□ -0.4
SHKBP1-205ENST00000594973 RPL39LQ96EH5 51 aaKnown RBP12.53□□□□□ -0.4
SHKBP1-205ENST00000594973 TRBV30A0A0K0K1B3 111 aa12.53□□□□□ -0.4
SHKBP1-205ENST00000594973 TSPEAR-AS2P59090 65 aa12.53□□□□□ -0.4
SHKBP1-205ENST00000594973 LINC01006Q8NI28 216 aa12.53□□□□□ -0.4
SHKBP1-205ENST00000594973 TMEM141Q96I45 108 aa12.53□□□□□ -0.4
SHKBP1-205ENST00000594973 CITED2Q99967 270 aaPredicted RBP12.53□□□□□ -0.4
SHKBP1-205ENST00000594973 SETXQ7Z333 2677 aaKnown RBP12.52□□□□□ -0.41
SHKBP1-205ENST00000594973 A0A087WWL8 130 aa12.51□□□□□ -0.41
SHKBP1-205ENST00000594973 J3QQQ9 107 aa12.51□□□□□ -0.41
SHKBP1-205ENST00000594973 EIF4EBP3O60516 100 aaPredicted RBP12.51□□□□□ -0.41
SHKBP1-205ENST00000594973 RNASE1P07998 156 aaKnown RBP12.51□□□□□ -0.41
SHKBP1-205ENST00000594973 HTN1P15515 57 aa12.51□□□□□ -0.41
SHKBP1-205ENST00000594973 DEFB114Q30KQ6 69 aa12.51□□□□□ -0.41
SHKBP1-205ENST00000594973 IGHV1OR15-1A0A075B7D0 117 aa12.51□□□□□ -0.41
SHKBP1-205ENST00000594973 IGHV3-16A0A0C4DH30 117 aa12.51□□□□□ -0.41
SHKBP1-205ENST00000594973 IGIPA6NJ69 53 aa12.51□□□□□ -0.41
SHKBP1-205ENST00000594973 H3BT86 120 aa12.51□□□□□ -0.41
SHKBP1-205ENST00000594973 LGALS3P17931 250 aaKnown RBP12.51□□□□□ -0.41
SHKBP1-205ENST00000594973 DEFB121Q5J5C9 76 aa12.51□□□□□ -0.41
SHKBP1-205ENST00000594973 PPDPFQ9H3Y8 114 aa12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 70.4 ms