RNA–Protein interactions for RNA: ENST00000586058.1

LIG3-206, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 581 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-206ENST00000586058 KPRPQ5T749 579 aaPredicted RBP4.42□□□□□ -1.7
LIG3-206ENST00000586058 UFSP1Q6NVU6 142 aa4.42□□□□□ -1.7
LIG3-206ENST00000586058 PET117Q6UWS5 81 aa4.42□□□□□ -1.7
LIG3-206ENST00000586058 C2orf66Q6UXQ4 117 aa4.42□□□□□ -1.7
LIG3-206ENST00000586058 SH2D6Q7Z4S9 175 aa4.42□□□□□ -1.7
LIG3-206ENST00000586058 NEXN-AS1Q8NBZ9 246 aa4.42□□□□□ -1.7
LIG3-206ENST00000586058 ZNRF2Q8NHG8 242 aa4.42□□□□□ -1.7
LIG3-206ENST00000586058 SCGB3A1Q96QR1 104 aa4.42□□□□□ -1.7
LIG3-206ENST00000586058 VAMP8Q9BV40 100 aa4.42□□□□□ -1.7
LIG3-206ENST00000586058 TRBV25-1A0A075B6N4 114 aa4.41□□□□□ -1.7
LIG3-206ENST00000586058 GAGE12JA6NER3 117 aa4.41□□□□□ -1.7
LIG3-206ENST00000586058 IFITM10A6NMD0 228 aa4.41□□□□□ -1.7
LIG3-206ENST00000586058 F5H768 121 aa4.41□□□□□ -1.7
LIG3-206ENST00000586058 TSTD3H0UI37 97 aa4.41□□□□□ -1.7
LIG3-206ENST00000586058 SYS1-DBNDD2H3BUS1 97 aa4.41□□□□□ -1.7
LIG3-206ENST00000586058 DEFB4AO15263 64 aa4.41□□□□□ -1.7
LIG3-206ENST00000586058 GAS8-AS1O95177 125 aa4.41□□□□□ -1.7
LIG3-206ENST00000586058 C3orf79P0CE67 100 aa4.41□□□□□ -1.7
LIG3-206ENST00000586058 PCP4P48539 62 aa4.41□□□□□ -1.7
LIG3-206ENST00000586058 POLR2KP53803 58 aaKnown RBP4.41□□□□□ -1.7
LIG3-206ENST00000586058 GAGE1Q13065 139 aa4.41□□□□□ -1.7
LIG3-206ENST00000586058 GAGE4Q13068 117 aa4.41□□□□□ -1.7
LIG3-206ENST00000586058 GAGE5Q13069 117 aa4.41□□□□□ -1.7
LIG3-206ENST00000586058 GAGE13Q4V321 117 aa4.41□□□□□ -1.7
LIG3-206ENST00000586058 AMMECR1LQ6DCA0 310 aa4.41□□□□□ -1.7
LIG3-206ENST00000586058 DGAT2L7PQ6IED9 249 aa4.41□□□□□ -1.7
LIG3-206ENST00000586058 ERASQ7Z444 233 aa4.41□□□□□ -1.7
LIG3-206ENST00000586058 LINC00612Q8N6U2 182 aa4.41□□□□□ -1.7
LIG3-206ENST00000586058 SLC25A29Q8N8R3 303 aa4.41□□□□□ -1.7
LIG3-206ENST00000586058 PHLDA1Q8WV24 401 aaPredicted RBP4.41□□□□□ -1.7
LIG3-206ENST00000586058 TOMM6Q96B49 74 aa4.41□□□□□ -1.7
LIG3-206ENST00000586058 URB1-AS1Q96HZ7 61 aa4.41□□□□□ -1.7
LIG3-206ENST00000586058 TMEM141Q96I45 108 aa4.41□□□□□ -1.7
LIG3-206ENST00000586058 HHLA3Q9XRX5 114 aa4.41□□□□□ -1.7
LIG3-206ENST00000586058 IGLV2-18A0A075B6J9 118 aa4.4□□□□□ -1.71
LIG3-206ENST00000586058 K7EIL1 84 aa4.4□□□□□ -1.71
LIG3-206ENST00000586058 P0DMU3 169 aa4.4□□□□□ -1.71
LIG3-206ENST00000586058 FAM231AP0DMU4 169 aa4.4□□□□□ -1.71
LIG3-206ENST00000586058 FAM231CP0DMU5 169 aa4.4□□□□□ -1.71
LIG3-206ENST00000586058 PKIAP61925 76 aa4.4□□□□□ -1.71
LIG3-206ENST00000586058 NEGR1Q7Z3B1 354 aa4.4□□□□□ -1.71
LIG3-206ENST00000586058 C11orf45Q8TAV5 145 aa4.4□□□□□ -1.71
LIG3-206ENST00000586058 TMEM101Q96IK0 257 aa4.4□□□□□ -1.71
LIG3-206ENST00000586058 TIMM17AQ99595 171 aa4.4□□□□□ -1.71
LIG3-206ENST00000586058 C2orf88Q9BSF0 95 aa4.4□□□□□ -1.71
LIG3-206ENST00000586058 RETNQ9HD89 108 aa4.4□□□□□ -1.71
LIG3-206ENST00000586058 SPANXA1Q9NS26 97 aa4.4□□□□□ -1.71
LIG3-206ENST00000586058 ICOSQ9Y6W8 199 aa4.4□□□□□ -1.71
LIG3-206ENST00000586058 NIPBLQ6KC79 2804 aaeCLIP4.4□□□□□ -1.71
LIG3-206ENST00000586058 IGHV3-38A0A0C4DH36 116 aa4.39□□□□□ -1.71
LIG3-206ENST00000586058 A0A0J9YWU9 116 aa4.39□□□□□ -1.71
LIG3-206ENST00000586058 H7C423 109 aa4.39□□□□□ -1.71
LIG3-206ENST00000586058 TSHBP01222 138 aa4.39□□□□□ -1.71
LIG3-206ENST00000586058 PRB2P02812 416 aaPredicted RBP4.39□□□□□ -1.71
LIG3-206ENST00000586058 NPSP0C0P6 89 aa4.39□□□□□ -1.71
LIG3-206ENST00000586058 GYPEP15421 78 aa4.39□□□□□ -1.71
LIG3-206ENST00000586058 PLNP26678 52 aa4.39□□□□□ -1.71
LIG3-206ENST00000586058 CRYBA4P53673 196 aa4.39□□□□□ -1.71
LIG3-206ENST00000586058 UBE2D3P61077 147 aa4.39□□□□□ -1.71
LIG3-206ENST00000586058 UBE2D2P62837 147 aa4.39□□□□□ -1.71
LIG3-206ENST00000586058 FHL2Q14192 279 aa4.39□□□□□ -1.71
LIG3-206ENST00000586058 MRPL23Q16540 153 aaKnown RBP4.39□□□□□ -1.71
LIG3-206ENST00000586058 PYY3Q5JQD4 70 aa4.39□□□□□ -1.71
LIG3-206ENST00000586058 LGALS9CQ6DKI2 356 aa4.39□□□□□ -1.71
LIG3-206ENST00000586058 TEX43Q6ZNM6 134 aa4.39□□□□□ -1.71
LIG3-206ENST00000586058 LINC00518Q8N0U6 118 aa4.39□□□□□ -1.71
LIG3-206ENST00000586058 C20orf203Q8NBC4 194 aa4.39□□□□□ -1.71
LIG3-206ENST00000586058 ATP6V0E2Q8NHE4 81 aa4.39□□□□□ -1.71
LIG3-206ENST00000586058 TM2D3Q9BRN9 247 aa4.39□□□□□ -1.71
LIG3-206ENST00000586058 TMEM243Q9BU79 118 aa4.39□□□□□ -1.71
LIG3-206ENST00000586058 GTSF1LQ9H1H1 148 aa4.39□□□□□ -1.71
LIG3-206ENST00000586058 CELA1Q9UNI1 258 aa4.39□□□□□ -1.71
LIG3-206ENST00000586058 TENM1Q9UKZ4 2725 aa4.38□□□□□ -1.71
LIG3-206ENST00000586058 MAST4O15021 2626 aa4.38□□□□□ -1.71
LIG3-206ENST00000586058 TRAV26-1A0A087WT03 109 aa4.38□□□□□ -1.71
LIG3-206ENST00000586058 A0A096LNJ9 63 aa4.38□□□□□ -1.71
LIG3-206ENST00000586058 TRAV12-1A0A0B4J245 112 aa4.38□□□□□ -1.71
LIG3-206ENST00000586058 A0A0J9YY99 117 aa4.38□□□□□ -1.71
LIG3-206ENST00000586058 ZNF25P17030 456 aaPredicted RBP4.38□□□□□ -1.71
LIG3-206ENST00000586058 HERVK_113P61574 105 aa4.38□□□□□ -1.71
LIG3-206ENST00000586058 LCE1DQ5T752 114 aa4.38□□□□□ -1.71
LIG3-206ENST00000586058 SPATA12Q7Z6I5 190 aa4.38□□□□□ -1.71
LIG3-206ENST00000586058 SBSPONQ8IVN8 264 aa4.38□□□□□ -1.71
LIG3-206ENST00000586058 B9D2Q9BPU9 175 aa4.38□□□□□ -1.71
LIG3-206ENST00000586058 CHCHD5Q9BSY4 110 aa4.38□□□□□ -1.71
LIG3-206ENST00000586058 TRAV10A0A0B4J240 114 aa4.37□□□□□ -1.71
LIG3-206ENST00000586058 F8VRH5 84 aa4.37□□□□□ -1.71
LIG3-206ENST00000586058 H3BNG1 76 aa4.37□□□□□ -1.71
LIG3-206ENST00000586058 DPM2O94777 84 aa4.37□□□□□ -1.71
LIG3-206ENST00000586058 IGKCP01834 107 aa4.37□□□□□ -1.71
LIG3-206ENST00000586058 NHLRC4P0CG21 123 aaPredicted RBP4.37□□□□□ -1.71
LIG3-206ENST00000586058 RPL39P62891 51 aaKnown RBP4.37□□□□□ -1.71
LIG3-206ENST00000586058 PMVKQ15126 192 aa4.37□□□□□ -1.71
LIG3-206ENST00000586058 LINC01545Q5VT33 79 aa4.37□□□□□ -1.71
LIG3-206ENST00000586058 Q6ZSN1 163 aa4.37□□□□□ -1.71
LIG3-206ENST00000586058 OR5A1Q8NGJ0 315 aa4.37□□□□□ -1.71
LIG3-206ENST00000586058 VCX2Q9H322 139 aa4.37□□□□□ -1.71
LIG3-206ENST00000586058 PAM16Q9Y3D7 125 aa4.37□□□□□ -1.71
LIG3-206ENST00000586058 PYGO1Q9Y3Y4 419 aa4.37□□□□□ -1.71
LIG3-206ENST00000586058 IGKV2D-29A0A075B6S2 120 aaPredicted RBP4.36□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 78 ms