RNA–Protein interactions for RNA: ENST00000568488.5

CLK3-223, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 481 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-223ENST00000568488 ENKURQ8TC29 256 aa9.77□□□□□ -0.85
CLK3-223ENST00000568488 PGLYRP4Q96LB8 373 aa9.77□□□□□ -0.85
CLK3-223ENST00000568488 IGHV1-58A0A0C4DH39 117 aa9.76□□□□□ -0.85
CLK3-223ENST00000568488 ZNF561-AS1K7EIQ3 104 aa9.76□□□□□ -0.85
CLK3-223ENST00000568488 AKR1C3P42330 323 aa9.76□□□□□ -0.85
CLK3-223ENST00000568488 ZNF726P1Q15940 193 aa9.76□□□□□ -0.85
CLK3-223ENST00000568488 RNASEKQ6P5S7 137 aaKnown RBP9.76□□□□□ -0.85
CLK3-223ENST00000568488 RASL11AQ6T310 242 aa9.76□□□□□ -0.85
CLK3-223ENST00000568488 CCDC32Q9BV29 185 aa9.76□□□□□ -0.85
CLK3-223ENST00000568488 BATF3Q9NR55 127 aa9.76□□□□□ -0.85
CLK3-223ENST00000568488 LOC107984640A0A0U1RRK4 108 aa9.75□□□□□ -0.85
CLK3-223ENST00000568488 CTXND1A0A1B0GTU2 59 aa9.75□□□□□ -0.85
CLK3-223ENST00000568488 H0Y9J4 135 aa9.75□□□□□ -0.85
CLK3-223ENST00000568488 IGLV7-43P04211 117 aa9.75□□□□□ -0.85
CLK3-223ENST00000568488 UBE2D1P51668 147 aa9.75□□□□□ -0.85
CLK3-223ENST00000568488 C9orf116Q5BN46 136 aaPredicted RBP9.75□□□□□ -0.85
CLK3-223ENST00000568488 CST9LP1Q5W188 147 aa9.75□□□□□ -0.85
CLK3-223ENST00000568488 TPPP3Q9BW30 176 aa9.75□□□□□ -0.85
CLK3-223ENST00000568488 NDUFA13Q9P0J0 144 aa9.75□□□□□ -0.85
CLK3-223ENST00000568488 TRAV1-1A0A0B4J248 108 aa9.74□□□□□ -0.85
CLK3-223ENST00000568488 INMT-MINDY4F8WBC2 141 aa9.74□□□□□ -0.85
CLK3-223ENST00000568488 STOML3Q8TAV4 291 aa9.74□□□□□ -0.85
CLK3-223ENST00000568488 NIT2Q9NQR4 276 aa9.74□□□□□ -0.85
CLK3-223ENST00000568488 BCL2P10415 239 aa9.73□□□□□ -0.85
CLK3-223ENST00000568488 EIF5AP63241 154 aaKnown RBP9.73□□□□□ -0.85
CLK3-223ENST00000568488 MUC17Q685J3 4493 aa9.73□□□□□ -0.85
CLK3-223ENST00000568488 CCL25O15444 150 aa9.72□□□□□ -0.85
CLK3-223ENST00000568488 TSPAN13O95857 204 aa9.72□□□□□ -0.85
CLK3-223ENST00000568488 A0A087WZ39 114 aa9.71□□□□□ -0.86
CLK3-223ENST00000568488 IGKV2D-29A0A075B6S2 120 aaPredicted RBP9.7□□□□□ -0.86
CLK3-223ENST00000568488 IGKV2-29A2NJV5 120 aaPredicted RBP9.7□□□□□ -0.86
CLK3-223ENST00000568488 FGF6P10767 208 aa9.7□□□□□ -0.86
CLK3-223ENST00000568488 CAMPP49913 170 aa9.7□□□□□ -0.86
CLK3-223ENST00000568488 BAGE2Q86Y30 109 aa9.7□□□□□ -0.86
CLK3-223ENST00000568488 ISOC2Q96AB3 205 aa9.7□□□□□ -0.86
CLK3-223ENST00000568488 CRCT1Q9UGL9 99 aa9.7□□□□□ -0.86
CLK3-223ENST00000568488 FSIP2Q5CZC0 6907 aa9.7□□□□□ -0.86
CLK3-223ENST00000568488 KRTAP1-4P0C5Y4 121 aa9.69□□□□□ -0.86
CLK3-223ENST00000568488 RPL13AP40429 203 aaKnown RBP9.69□□□□□ -0.86
CLK3-223ENST00000568488 RPL18AQ02543 176 aaKnown RBP9.69□□□□□ -0.86
CLK3-223ENST00000568488 OR5A1Q8NGJ0 315 aa9.69□□□□□ -0.86
CLK3-223ENST00000568488 TCEAL7Q9BRU2 100 aa9.69□□□□□ -0.86
CLK3-223ENST00000568488 LINC00959A0A1B0GUT2 108 aa9.68□□□□□ -0.86
CLK3-223ENST00000568488 S100A9P06702 114 aaKnown RBP9.68□□□□□ -0.86
CLK3-223ENST00000568488 MLST8Q9BVC4 326 aa9.68□□□□□ -0.86
CLK3-223ENST00000568488 MED28Q9H204 178 aa9.68□□□□□ -0.86
CLK3-223ENST00000568488 IGLV4-69A0A075B6H9 119 aa9.67□□□□□ -0.86
CLK3-223ENST00000568488 MAP1LC3B2A6NCE7 125 aa9.67□□□□□ -0.86
CLK3-223ENST00000568488 FHITP49789 147 aa9.67□□□□□ -0.86
CLK3-223ENST00000568488 Q6ZNX1 250 aa9.67□□□□□ -0.86
CLK3-223ENST00000568488 MAP1LC3BQ9GZQ8 125 aa9.67□□□□□ -0.86
CLK3-223ENST00000568488 APOMO95445 188 aa9.66□□□□□ -0.86
CLK3-223ENST00000568488 NTF3P20783 257 aa9.66□□□□□ -0.86
CLK3-223ENST00000568488 AKR1C8PQ5T2L2 129 aa9.66□□□□□ -0.86
CLK3-223ENST00000568488 RPL7L1Q6DKI1 246 aaKnown RBP9.66□□□□□ -0.86
CLK3-223ENST00000568488 BTF3L4Q96K17 158 aa9.66□□□□□ -0.86
CLK3-223ENST00000568488 CAMK2N2Q96S95 79 aa9.66□□□□□ -0.86
CLK3-223ENST00000568488 PAGE4O60829 102 aa9.65□□□□□ -0.86
CLK3-223ENST00000568488 APCSP02743 223 aa9.65□□□□□ -0.86
CLK3-223ENST00000568488 DEFA1P59665 94 aa9.65□□□□□ -0.86
CLK3-223ENST00000568488 SS18Q15532 418 aa9.65□□□□□ -0.86
CLK3-223ENST00000568488 NUP35Q8NFH5 326 aa9.65□□□□□ -0.86
CLK3-223ENST00000568488 TMEM101Q96IK0 257 aa9.65□□□□□ -0.86
CLK3-223ENST00000568488 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP9.64□□□□□ -0.87
CLK3-223ENST00000568488 H7C423 109 aa9.64□□□□□ -0.87
CLK3-223ENST00000568488 TRGC1P0CF51 173 aa9.64□□□□□ -0.87
CLK3-223ENST00000568488 MEF2BQ02080 365 aaPredicted RBP9.64□□□□□ -0.87
CLK3-223ENST00000568488 KRTAP11-1Q8IUC1 163 aa9.64□□□□□ -0.87
CLK3-223ENST00000568488 OR2D3Q8NGH3 330 aa9.64□□□□□ -0.87
CLK3-223ENST00000568488 OPRPNQ99935 248 aaPredicted RBP9.64□□□□□ -0.87
CLK3-223ENST00000568488 BORCS7-ASMTA0A0B4J1R7 106 aa9.63□□□□□ -0.87
CLK3-223ENST00000568488 SCO2A0A1W2PP80 73 aa9.63□□□□□ -0.87
CLK3-223ENST00000568488 IGLC6P0CF74 106 aa9.63□□□□□ -0.87
CLK3-223ENST00000568488 MALP21145 153 aa9.63□□□□□ -0.87
CLK3-223ENST00000568488 LCE2DQ5TA82 110 aaPredicted RBP9.63□□□□□ -0.87
CLK3-223ENST00000568488 CD164L2Q6UWJ8 174 aa9.63□□□□□ -0.87
CLK3-223ENST00000568488 TSKUQ8WUA8 353 aa9.63□□□□□ -0.87
CLK3-223ENST00000568488 MARVELD1Q9BSK0 173 aa9.63□□□□□ -0.87
CLK3-223ENST00000568488 NCR2O95944 276 aa9.62□□□□□ -0.87
CLK3-223ENST00000568488 ZNF25P17030 456 aaPredicted RBP9.62□□□□□ -0.87
CLK3-223ENST00000568488 EIF5AL1Q6IS14 154 aaKnown RBP9.62□□□□□ -0.87
CLK3-223ENST00000568488 GATD1Q8NB37 220 aa9.61□□□□□ -0.87
CLK3-223ENST00000568488 FAM168BA1KXE4 195 aa9.6□□□□□ -0.87
CLK3-223ENST00000568488 BCL2L11O43521 198 aa9.6□□□□□ -0.87
CLK3-223ENST00000568488 RPS20P60866 119 aaKnown RBP9.6□□□□□ -0.87
CLK3-223ENST00000568488 TMUB2Q71RG4 321 aa9.6□□□□□ -0.87
CLK3-223ENST00000568488 F2Z2F3 143 aa9.59□□□□□ -0.87
CLK3-223ENST00000568488 PFDN1O60925 122 aa9.59□□□□□ -0.87
CLK3-223ENST00000568488 LYZL1Q6UWQ5 148 aa9.59□□□□□ -0.87
CLK3-223ENST00000568488 RPL39LQ96EH5 51 aaKnown RBP9.59□□□□□ -0.87
CLK3-223ENST00000568488 CDIP1Q9H305 208 aa9.59□□□□□ -0.87
CLK3-223ENST00000568488 CARHSP1Q9Y2V2 147 aaKnown RBP9.59□□□□□ -0.87
CLK3-223ENST00000568488 COX7A2LO14548 114 aa9.58□□□□□ -0.88
CLK3-223ENST00000568488 UPK1BO75841 260 aa9.58□□□□□ -0.88
CLK3-223ENST00000568488 FAM19A5Q7Z5A7 132 aaPredicted RBP9.58□□□□□ -0.88
CLK3-223ENST00000568488 A0A1B0GV50 99 aa9.57□□□□□ -0.88
CLK3-223ENST00000568488 PMCHP20382 165 aa9.57□□□□□ -0.88
CLK3-223ENST00000568488 UBE2BP63146 152 aa9.57□□□□□ -0.88
CLK3-223ENST00000568488 C2orf48Q96LS8 159 aa9.57□□□□□ -0.88
CLK3-223ENST00000568488 SDHAF1A6NFY7 115 aa9.56□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 221.5 ms