RNA–Protein interactions for RNA: ENST00000568373.5

SMPD3-211, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 1 (best) BASIC

Gene SMPD3, Length 2,073 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-211ENST00000568373 CHAC1Q9BUX1 264 aa13.06□□□□□ -0.32
SMPD3-211ENST00000568373 EMP1P54849 157 aa13.05□□□□□ -0.32
SMPD3-211ENST00000568373 OR4C5Q8NGB2 326 aa13.05□□□□□ -0.32
SMPD3-211ENST00000568373 OPRPNQ99935 248 aaPredicted RBP13.05□□□□□ -0.32
SMPD3-211ENST00000568373 CSNK1G2-AS1Q8NCQ2 148 aa13.04□□□□□ -0.32
SMPD3-211ENST00000568373 CRLF1O75462 422 aa13.04□□□□□ -0.32
SMPD3-211ENST00000568373 Q6ZTI0 123 aa13.04□□□□□ -0.32
SMPD3-211ENST00000568373 PRADC1Q9BSG0 188 aa13.04□□□□□ -0.32
SMPD3-211ENST00000568373 CBY1Q9Y3M2 126 aa13.04□□□□□ -0.32
SMPD3-211ENST00000568373 DAZ2Q13117 558 aaKnown RBP13.03□□□□□ -0.32
SMPD3-211ENST00000568373 C16orf74Q96GX8 76 aa13.03□□□□□ -0.32
SMPD3-211ENST00000568373 PYGO1Q9Y3Y4 419 aa13.03□□□□□ -0.32
SMPD3-211ENST00000568373 IGLV4-3A0A075B6K6 122 aa13.03□□□□□ -0.32
SMPD3-211ENST00000568373 A6NDN8 102 aa13.03□□□□□ -0.32
SMPD3-211ENST00000568373 NPSP0C0P6 89 aa13.03□□□□□ -0.32
SMPD3-211ENST00000568373 MYMXA0A1B0GTQ4 84 aa13.02□□□□□ -0.33
SMPD3-211ENST00000568373 ZNRF2Q8NHG8 242 aa13.02□□□□□ -0.33
SMPD3-211ENST00000568373 ZNF479Q96JC4 524 aa13.02□□□□□ -0.33
SMPD3-211ENST00000568373 NOP10Q9NPE3 64 aaKnown RBP13.02□□□□□ -0.33
SMPD3-211ENST00000568373 VWFP04275 2813 aa13.02□□□□□ -0.33
SMPD3-211ENST00000568373 TRAV4A0A0B4J268 109 aa13.01□□□□□ -0.33
SMPD3-211ENST00000568373 PLAC8L1A1L4L8 177 aa13.01□□□□□ -0.33
SMPD3-211ENST00000568373 HERVK_113P61574 105 aa13.01□□□□□ -0.33
SMPD3-211ENST00000568373 NFE4Q86UQ8 179 aa13.01□□□□□ -0.33
SMPD3-211ENST00000568373 CHCHD7Q9BUK0 85 aa13.01□□□□□ -0.33
SMPD3-211ENST00000568373 VCX2Q9H322 139 aa13.01□□□□□ -0.33
SMPD3-211ENST00000568373 INSL3P51460 131 aa13□□□□□ -0.33
SMPD3-211ENST00000568373 COTL1Q14019 142 aa13□□□□□ -0.33
SMPD3-211ENST00000568373 RRN3P1Q2M238 152 aa13□□□□□ -0.33
SMPD3-211ENST00000568373 PHLDA1Q8WV24 401 aaPredicted RBP13□□□□□ -0.33
SMPD3-211ENST00000568373 TENM1Q9UKZ4 2725 aa12.99□□□□□ -0.33
SMPD3-211ENST00000568373 IGHV3-38A0A0C4DH36 116 aa12.99□□□□□ -0.33
SMPD3-211ENST00000568373 GCSHP23434 173 aa12.99□□□□□ -0.33
SMPD3-211ENST00000568373 TMEM170BQ5T4T1 132 aa12.99□□□□□ -0.33
SMPD3-211ENST00000568373 FAM104AQ969W3 186 aa12.98□□□□□ -0.33
SMPD3-211ENST00000568373 TRBV10-1A0A0K0K1A3 114 aa12.98□□□□□ -0.33
SMPD3-211ENST00000568373 CRYBA4P53673 196 aa12.98□□□□□ -0.33
SMPD3-211ENST00000568373 C9orf66Q5T8R8 295 aa12.98□□□□□ -0.33
SMPD3-211ENST00000568373 SPATA3Q8NHX4 192 aa12.98□□□□□ -0.33
SMPD3-211ENST00000568373 TRBV7-3A0A075B6L6 115 aa12.97□□□□□ -0.33
SMPD3-211ENST00000568373 H3BRM9 83 aa12.97□□□□□ -0.33
SMPD3-211ENST00000568373 K7EQD1 137 aa12.97□□□□□ -0.33
SMPD3-211ENST00000568373 FXYD2P54710 66 aa12.97□□□□□ -0.33
SMPD3-211ENST00000568373 TAL2Q16559 108 aa12.97□□□□□ -0.33
SMPD3-211ENST00000568373 CEND1Q8N111 149 aa12.97□□□□□ -0.33
SMPD3-211ENST00000568373 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP12.97□□□□□ -0.33
SMPD3-211ENST00000568373 AMELXQ99217 191 aa12.97□□□□□ -0.33
SMPD3-211ENST00000568373 OVOL2Q9BRP0 275 aa12.97□□□□□ -0.33
SMPD3-211ENST00000568373 TM2D2Q9BX73 214 aa12.97□□□□□ -0.33
SMPD3-211ENST00000568373 SPANXA1Q9NS26 97 aa12.97□□□□□ -0.33
SMPD3-211ENST00000568373 ZNF815PA8K554 130 aa12.97□□□□□ -0.33
SMPD3-211ENST00000568373 CEMP1Q6PRD7 247 aaPredicted RBP12.97□□□□□ -0.33
SMPD3-211ENST00000568373 UBE2D4Q9Y2X8 147 aa12.97□□□□□ -0.33
SMPD3-211ENST00000568373 UBE2V1Q13404 147 aa12.96□□□□□ -0.33
SMPD3-211ENST00000568373 VAMP3Q15836 100 aa12.96□□□□□ -0.33
SMPD3-211ENST00000568373 CITED1Q99966 193 aa12.96□□□□□ -0.33
SMPD3-211ENST00000568373 IGKV2D-29A0A075B6S2 120 aaPredicted RBP12.95□□□□□ -0.34
SMPD3-211ENST00000568373 IGKV2-29A2NJV5 120 aaPredicted RBP12.95□□□□□ -0.34
SMPD3-211ENST00000568373 K7EP13 123 aa12.95□□□□□ -0.34
SMPD3-211ENST00000568373 RPL36AP83881 106 aaKnown RBP12.95□□□□□ -0.34
SMPD3-211ENST00000568373 RPL36ALQ969Q0 106 aaKnown RBP12.95□□□□□ -0.34
SMPD3-211ENST00000568373 ATRQ13535 2644 aa12.95□□□□□ -0.34
SMPD3-211ENST00000568373 GAGE12BA1L429 117 aa12.95□□□□□ -0.34
SMPD3-211ENST00000568373 GAGE7O76087 117 aa12.95□□□□□ -0.34
SMPD3-211ENST00000568373 GAGE12FP0CL80 117 aa12.95□□□□□ -0.34
SMPD3-211ENST00000568373 GAGE12GP0CL81 117 aa12.95□□□□□ -0.34
SMPD3-211ENST00000568373 GAGE12IP0CL82 117 aa12.95□□□□□ -0.34
SMPD3-211ENST00000568373 SLC25A29Q8N8R3 303 aa12.95□□□□□ -0.34
SMPD3-211ENST00000568373 TRGV2A0A075B6R0 118 aa12.94□□□□□ -0.34
SMPD3-211ENST00000568373 A0A0J9YXV3 536 aa12.94□□□□□ -0.34
SMPD3-211ENST00000568373 PTTG1IPP53801 180 aa12.94□□□□□ -0.34
SMPD3-211ENST00000568373 HIST1H4GQ99525 98 aa12.94□□□□□ -0.34
SMPD3-211ENST00000568373 CCL25O15444 150 aa12.93□□□□□ -0.34
SMPD3-211ENST00000568373 ZNF22P17026 224 aaPredicted RBP12.93□□□□□ -0.34
SMPD3-211ENST00000568373 TMEM223A0PJW6 202 aa12.93□□□□□ -0.34
SMPD3-211ENST00000568373 C9orf118A6NHY6 69 aa12.93□□□□□ -0.34
SMPD3-211ENST00000568373 CIDEAO60543 219 aa12.93□□□□□ -0.34
SMPD3-211ENST00000568373 TSPEAR-AS2P59090 65 aa12.92□□□□□ -0.34
SMPD3-211ENST00000568373 MRPS36P82909 103 aaKnown RBP12.92□□□□□ -0.34
SMPD3-211ENST00000568373 DAZ4Q86SG3 579 aaKnown RBP12.92□□□□□ -0.34
SMPD3-211ENST00000568373 DAZ3Q9NR90 486 aaKnown RBP12.92□□□□□ -0.34
SMPD3-211ENST00000568373 SCGB1D4Q6XE38 83 aa12.92□□□□□ -0.34
SMPD3-211ENST00000568373 SMIM13P0DJ93 91 aa12.91□□□□□ -0.34
SMPD3-211ENST00000568373 UBE2D3P61077 147 aa12.91□□□□□ -0.34
SMPD3-211ENST00000568373 UBE2D2P62837 147 aa12.91□□□□□ -0.34
SMPD3-211ENST00000568373 RNASE13Q5GAN3 156 aaKnown RBP12.91□□□□□ -0.34
SMPD3-211ENST00000568373 AMMECR1LQ6DCA0 310 aa12.91□□□□□ -0.34
SMPD3-211ENST00000568373 PLEKHB2Q96CS7 222 aa12.91□□□□□ -0.34
SMPD3-211ENST00000568373 J3QQQ9 107 aa12.9□□□□□ -0.34
SMPD3-211ENST00000568373 Q6ZUT4 128 aa12.9□□□□□ -0.34
SMPD3-211ENST00000568373 RAB37Q96AX2 223 aa12.9□□□□□ -0.34
SMPD3-211ENST00000568373 TIMM21Q9BVV7 248 aa12.9□□□□□ -0.34
SMPD3-211ENST00000568373 TRBV6-4A0A1B0GX49 114 aa12.89□□□□□ -0.35
SMPD3-211ENST00000568373 GAGE12JA6NER3 117 aa12.89□□□□□ -0.35
SMPD3-211ENST00000568373 LEPROTO15243 131 aa12.89□□□□□ -0.35
SMPD3-211ENST00000568373 GAGE4Q13068 117 aa12.89□□□□□ -0.35
SMPD3-211ENST00000568373 GAGE5Q13069 117 aa12.89□□□□□ -0.35
SMPD3-211ENST00000568373 GAGE13Q4V321 117 aa12.89□□□□□ -0.35
SMPD3-211ENST00000568373 NHP2Q9NX24 153 aaKnown RBP12.89□□□□□ -0.35
SMPD3-211ENST00000568373 FBN1P35555 2871 aaKnown RBP12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms