RNA–Protein interactions for RNA: ENST00000566126.5

CLK3-217, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 732 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-217ENST00000566126 FAM168BA1KXE4 195 aa9.63□□□□□ -0.87
CLK3-217ENST00000566126 CENPXA8MT69 81 aa9.63□□□□□ -0.87
CLK3-217ENST00000566126 CCL25O15444 150 aa9.63□□□□□ -0.87
CLK3-217ENST00000566126 SMIM17P0DL12 118 aa9.63□□□□□ -0.87
CLK3-217ENST00000566126 LRRC37A5PQ49AS3 106 aa9.63□□□□□ -0.87
CLK3-217ENST00000566126 SUMO4Q6EEV6 95 aa9.63□□□□□ -0.87
CLK3-217ENST00000566126 ISOC2Q96AB3 205 aa9.63□□□□□ -0.87
CLK3-217ENST00000566126 HSPB11Q9Y547 144 aa9.63□□□□□ -0.87
CLK3-217ENST00000566126 TSKUQ8WUA8 353 aa9.62□□□□□ -0.87
CLK3-217ENST00000566126 WFDC1Q9HC57 220 aa9.62□□□□□ -0.87
CLK3-217ENST00000566126 TMEM167BQ9NRX6 74 aa9.62□□□□□ -0.87
CLK3-217ENST00000566126 A0A1W2PRE2 83 aa9.61□□□□□ -0.87
CLK3-217ENST00000566126 OR5AL1P0C617 328 aa9.61□□□□□ -0.87
CLK3-217ENST00000566126 COTL1Q14019 142 aa9.61□□□□□ -0.87
CLK3-217ENST00000566126 ASB16-AS1Q495Z4 193 aa9.61□□□□□ -0.87
CLK3-217ENST00000566126 OR5A1Q8NGJ0 315 aa9.61□□□□□ -0.87
CLK3-217ENST00000566126 TYMSOSQ8TAI1 123 aa9.61□□□□□ -0.87
CLK3-217ENST00000566126 AP1S3Q96PC3 154 aa9.61□□□□□ -0.87
CLK3-217ENST00000566126 SIX6O95475 246 aa9.6□□□□□ -0.87
CLK3-217ENST00000566126 MGPP08493 103 aa9.6□□□□□ -0.87
CLK3-217ENST00000566126 CXCL1P09341 107 aa9.6□□□□□ -0.87
CLK3-217ENST00000566126 LINC00959A0A1B0GUT2 108 aa9.59□□□□□ -0.87
CLK3-217ENST00000566126 LORP23490 312 aaPredicted RBP9.59□□□□□ -0.87
CLK3-217ENST00000566126 S100A5P33763 92 aa9.59□□□□□ -0.87
CLK3-217ENST00000566126 AMMECR1LQ6DCA0 310 aa9.59□□□□□ -0.87
CLK3-217ENST00000566126 EIF5AL1Q6IS14 154 aaKnown RBP9.59□□□□□ -0.87
CLK3-217ENST00000566126 OPRPNQ99935 248 aaPredicted RBP9.59□□□□□ -0.87
CLK3-217ENST00000566126 MT1HP80294 61 aa9.58□□□□□ -0.88
CLK3-217ENST00000566126 RNASEKQ6P5S7 137 aaKnown RBP9.58□□□□□ -0.88
CLK3-217ENST00000566126 RASL11AQ6T310 242 aa9.58□□□□□ -0.88
CLK3-217ENST00000566126 LINC00173Q6ZV60 143 aa9.58□□□□□ -0.88
CLK3-217ENST00000566126 KRTAP7-1Q8IUC3 87 aa9.58□□□□□ -0.88
CLK3-217ENST00000566126 CAMK2N2Q96S95 79 aa9.58□□□□□ -0.88
CLK3-217ENST00000566126 CXorf1O96002 111 aa9.57□□□□□ -0.88
CLK3-217ENST00000566126 HIST1H2BAQ96A08 127 aa9.57□□□□□ -0.88
CLK3-217ENST00000566126 PPDPFQ9H3Y8 114 aa9.57□□□□□ -0.88
CLK3-217ENST00000566126 NUDT15Q9NV35 164 aa9.57□□□□□ -0.88
CLK3-217ENST00000566126 IGKV2D-29A0A075B6S2 120 aaPredicted RBP9.56□□□□□ -0.88
CLK3-217ENST00000566126 IGKV2-29A2NJV5 120 aaPredicted RBP9.56□□□□□ -0.88
CLK3-217ENST00000566126 PLA2G10O15496 165 aa9.56□□□□□ -0.88
CLK3-217ENST00000566126 ZNF861PO60384 105 aa9.56□□□□□ -0.88
CLK3-217ENST00000566126 LTAP01374 205 aa9.56□□□□□ -0.88
CLK3-217ENST00000566126 CFC1BP0CG36 223 aa9.56□□□□□ -0.88
CLK3-217ENST00000566126 FAM19A5Q7Z5A7 132 aaPredicted RBP9.56□□□□□ -0.88
CLK3-217ENST00000566126 NIT2Q9NQR4 276 aa9.56□□□□□ -0.88
CLK3-217ENST00000566126 BCL2L11O43521 198 aa9.55□□□□□ -0.88
CLK3-217ENST00000566126 UBE2G2P60604 165 aa9.55□□□□□ -0.88
CLK3-217ENST00000566126 CD164L2Q6UWJ8 174 aa9.55□□□□□ -0.88
CLK3-217ENST00000566126 FMC1Q96HJ9 113 aa9.55□□□□□ -0.88
CLK3-217ENST00000566126 KRTAP19-2Q3LHN2 52 aa9.54□□□□□ -0.88
CLK3-217ENST00000566126 Q6ZNX1 250 aa9.54□□□□□ -0.88
CLK3-217ENST00000566126 SSPOA2VEC9 5147 aa9.53□□□□□ -0.88
CLK3-217ENST00000566126 IL7P13232 177 aa9.53□□□□□ -0.88
CLK3-217ENST00000566126 NTF3P20783 257 aa9.53□□□□□ -0.88
CLK3-217ENST00000566126 UBE2G1P62253 170 aa9.53□□□□□ -0.88
CLK3-217ENST00000566126 UBE2BP63146 152 aa9.53□□□□□ -0.88
CLK3-217ENST00000566126 RNF151Q2KHN1 245 aa9.53□□□□□ -0.88
CLK3-217ENST00000566126 C2orf48Q96LS8 159 aa9.53□□□□□ -0.88
CLK3-217ENST00000566126 C19orf71A6NCJ1 209 aa9.52□□□□□ -0.89
CLK3-217ENST00000566126 FAM74A7A6NL05 159 aa9.52□□□□□ -0.89
CLK3-217ENST00000566126 KRTAP10-6P60371 365 aaPredicted RBP9.52□□□□□ -0.89
CLK3-217ENST00000566126 KRTAP13-2Q52LG2 175 aa9.52□□□□□ -0.89
CLK3-217ENST00000566126 H7C423 109 aa9.51□□□□□ -0.89
CLK3-217ENST00000566126 LYRM1O43325 122 aa9.51□□□□□ -0.89
CLK3-217ENST00000566126 ESDP10768 282 aa9.51□□□□□ -0.89
CLK3-217ENST00000566126 M0QXV9 152 aa9.5□□□□□ -0.89
CLK3-217ENST00000566126 TSHBP01222 138 aa9.5□□□□□ -0.89
CLK3-217ENST00000566126 H2AFB2P0C5Z0 115 aa9.5□□□□□ -0.89
CLK3-217ENST00000566126 SS18Q15532 418 aa9.5□□□□□ -0.89
CLK3-217ENST00000566126 LINC00304Q8N9R0 145 aa9.5□□□□□ -0.89
CLK3-217ENST00000566126 PPP1R1CQ8WVI7 109 aa9.5□□□□□ -0.89
CLK3-217ENST00000566126 NOL3O60936 208 aaKnown RBP9.49□□□□□ -0.89
CLK3-217ENST00000566126 ZNF25P17030 456 aaPredicted RBP9.49□□□□□ -0.89
CLK3-217ENST00000566126 MALP21145 153 aa9.49□□□□□ -0.89
CLK3-217ENST00000566126 ATP6V0CP27449 155 aa9.49□□□□□ -0.89
CLK3-217ENST00000566126 ANAPC11Q9NYG5 84 aa9.49□□□□□ -0.89
CLK3-217ENST00000566126 NKX6-2Q9C056 277 aaPredicted RBP9.48□□□□□ -0.89
CLK3-217ENST00000566126 ACTR3CQ9C0K3 210 aaPredicted RBP9.48□□□□□ -0.89
CLK3-217ENST00000566126 USH2AO75445 5202 aa9.46□□□□□ -0.89
CLK3-217ENST00000566126 COX7A2LO14548 114 aa9.46□□□□□ -0.9
CLK3-217ENST00000566126 MPC2O95563 127 aa9.46□□□□□ -0.9
CLK3-217ENST00000566126 NCR2O95944 276 aa9.46□□□□□ -0.9
CLK3-217ENST00000566126 MBP02144 154 aa9.46□□□□□ -0.9
CLK3-217ENST00000566126 APCSP02743 223 aa9.46□□□□□ -0.9
CLK3-217ENST00000566126 SEC61BP60468 96 aaKnown RBP9.46□□□□□ -0.9
CLK3-217ENST00000566126 ZNF726P1Q15940 193 aa9.46□□□□□ -0.9
CLK3-217ENST00000566126 PSMG3Q9BT73 122 aaPredicted RBP9.46□□□□□ -0.9
CLK3-217ENST00000566126 H2BFSP57053 126 aa9.45□□□□□ -0.9
CLK3-217ENST00000566126 KRTAP13-3Q3SY46 172 aa9.45□□□□□ -0.9
CLK3-217ENST00000566126 LINC00337Q8N6G1 96 aa9.45□□□□□ -0.9
CLK3-217ENST00000566126 TMEM101Q96IK0 257 aa9.45□□□□□ -0.9
CLK3-217ENST00000566126 BTF3L4Q96K17 158 aa9.45□□□□□ -0.9
CLK3-217ENST00000566126 MRPL35Q9NZE8 188 aaKnown RBP9.45□□□□□ -0.9
CLK3-217ENST00000566126 G3V3Q6 166 aa9.44□□□□□ -0.9
CLK3-217ENST00000566126 TLX1NBP0CAT3 122 aa9.44□□□□□ -0.9
CLK3-217ENST00000566126 IMMP2LQ96T52 175 aa9.44□□□□□ -0.9
CLK3-217ENST00000566126 CDC42SE2Q9NRR3 84 aa9.44□□□□□ -0.9
CLK3-217ENST00000566126 CCDC160A6NGH7 325 aa9.43□□□□□ -0.9
CLK3-217ENST00000566126 IGLC6P0CF74 106 aa9.43□□□□□ -0.9
CLK3-217ENST00000566126 AKR1C3P42330 323 aa9.43□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 67.1 ms