RNA–Protein interactions for RNA: ENST00000564841.1

LINC00554-201, long intergenic non-protein coding RNA 554, humanhuman

BASIC

Gene LINC00554, Length 3,011 nt, Biotype antisense RNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00554-201ENST00000564841 NOTCH3Q9UM47 2321 aa12.1□□□□□ -0.47
LINC00554-201ENST00000564841 NPFFO15130 113 aa12.09□□□□□ -0.47
LINC00554-201ENST00000564841 IGHV4-38-2P0DP08 117 aa12.09□□□□□ -0.47
LINC00554-201ENST00000564841 LEPROTO15243 131 aa12.09□□□□□ -0.47
LINC00554-201ENST00000564841 TRBV30A0A0K0K1B3 111 aa12.08□□□□□ -0.47
LINC00554-201ENST00000564841 IGHV1-69DA0A0B4J2H0 117 aa12.08□□□□□ -0.48
LINC00554-201ENST00000564841 DUX5Q96PT3 197 aa12.08□□□□□ -0.48
LINC00554-201ENST00000564841 M0R2P5 195 aa12.08□□□□□ -0.48
LINC00554-201ENST00000564841 UNQ9165/PRO28630Q6UXU0 137 aa12.08□□□□□ -0.48
LINC00554-201ENST00000564841 MTORP42345 2549 aa12.07□□□□□ -0.48
LINC00554-201ENST00000564841 NBPF19A0A087WUL8 3843 aa12.07□□□□□ -0.48
LINC00554-201ENST00000564841 APCP25054 2843 aa12.07□□□□□ -0.48
LINC00554-201ENST00000564841 VCYO14598 125 aa12.07□□□□□ -0.48
LINC00554-201ENST00000564841 Q8N6K4 173 aa12.07□□□□□ -0.48
LINC00554-201ENST00000564841 SMCR5Q8TEV8 140 aa12.07□□□□□ -0.48
LINC00554-201ENST00000564841 TMEM141Q96I45 108 aa12.07□□□□□ -0.48
LINC00554-201ENST00000564841 TIMM17AQ99595 171 aa12.07□□□□□ -0.48
LINC00554-201ENST00000564841 TRAV12-3A0A0B4J271 114 aa12.07□□□□□ -0.48
LINC00554-201ENST00000564841 TRAV16A0A0A6YYK6 109 aaPredicted RBP12.06□□□□□ -0.48
LINC00554-201ENST00000564841 MINOS1Q5TGZ0 78 aa12.06□□□□□ -0.48
LINC00554-201ENST00000564841 ZNF843Q8N446 348 aa12.06□□□□□ -0.48
LINC00554-201ENST00000564841 LITAFQ99732 161 aa12.06□□□□□ -0.48
LINC00554-201ENST00000564841 MINOS1-NBL1R4GNA1 71 aa12.06□□□□□ -0.48
LINC00554-201ENST00000564841 TENM4Q6N022 2769 aa12.06□□□□□ -0.48
LINC00554-201ENST00000564841 EDN2P20800 178 aa12.06□□□□□ -0.48
LINC00554-201ENST00000564841 C9orf153Q5TBE3 101 aa12.06□□□□□ -0.48
LINC00554-201ENST00000564841 I3L3M4 83 aa12.05□□□□□ -0.48
LINC00554-201ENST00000564841 IGHV3-30-3P0DP02 117 aa12.05□□□□□ -0.48
LINC00554-201ENST00000564841 C10orf105Q8TEF2 133 aa12.05□□□□□ -0.48
LINC00554-201ENST00000564841 FASNP49327 2511 aaKnown RBP12.05□□□□□ -0.48
LINC00554-201ENST00000564841 CSDC2Q9Y534 153 aaKnown RBP12.05□□□□□ -0.48
LINC00554-201ENST00000564841 KRTAP10-9P60411 292 aa12.05□□□□□ -0.48
LINC00554-201ENST00000564841 EBI3Q14213 229 aa12.05□□□□□ -0.48
LINC00554-201ENST00000564841 POM121L12Q8N7R1 296 aa12.05□□□□□ -0.48
LINC00554-201ENST00000564841 LINC00477Q96M19 166 aa12.05□□□□□ -0.48
LINC00554-201ENST00000564841 HIST2H2BCQ6DN03 193 aa12.04□□□□□ -0.48
LINC00554-201ENST00000564841 ITPR2Q14571 2701 aa12.04□□□□□ -0.48
LINC00554-201ENST00000564841 IGHV4OR15-8A0A075B7B6 117 aa12.03□□□□□ -0.48
LINC00554-201ENST00000564841 A0A087WW49 117 aa12.03□□□□□ -0.48
LINC00554-201ENST00000564841 TRAV41A0A0B4J266 112 aa12.03□□□□□ -0.48
LINC00554-201ENST00000564841 FAM110DQ8TAY7 271 aaPredicted RBP12.03□□□□□ -0.48
LINC00554-201ENST00000564841 HECTD1Q9ULT8 2610 aa12.03□□□□□ -0.48
LINC00554-201ENST00000564841 NF1P21359 2839 aa12.03□□□□□ -0.48
LINC00554-201ENST00000564841 A0A0U1RRA0 63 aa12.03□□□□□ -0.48
LINC00554-201ENST00000564841 MRPL53Q96EL3 112 aaKnown RBP12.03□□□□□ -0.48
LINC00554-201ENST00000564841 TMEM126AQ9H061 195 aa12.03□□□□□ -0.48
LINC00554-201ENST00000564841 RS1O15537 224 aa12.02□□□□□ -0.49
LINC00554-201ENST00000564841 AVPP01185 164 aa12.02□□□□□ -0.49
LINC00554-201ENST00000564841 HERVK_113P63121 156 aa12.02□□□□□ -0.49
LINC00554-201ENST00000564841 FLNAP21333 2647 aaKnown RBP12.02□□□□□ -0.49
LINC00554-201ENST00000564841 TRBV7-7A0A0K0K1E9 115 aa12.02□□□□□ -0.49
LINC00554-201ENST00000564841 IGKV3-20P01619 116 aa12.02□□□□□ -0.49
LINC00554-201ENST00000564841 TMEM101Q96IK0 257 aa12.02□□□□□ -0.49
LINC00554-201ENST00000564841 H3BUX3 64 aa12.01□□□□□ -0.49
LINC00554-201ENST00000564841 PPP1R17O96001 155 aa12.01□□□□□ -0.49
LINC00554-201ENST00000564841 IGHV1-69P01742 117 aa12.01□□□□□ -0.49
LINC00554-201ENST00000564841 U3KQE9 123 aa12.01□□□□□ -0.49
LINC00554-201ENST00000564841 LST1O00453 97 aa12□□□□□ -0.49
LINC00554-201ENST00000564841 IGLV4-3A0A075B6K6 122 aa12□□□□□ -0.49
LINC00554-201ENST00000564841 TRBV27A0A0K0K1C4 114 aa12□□□□□ -0.49
LINC00554-201ENST00000564841 H3BT86 120 aa12□□□□□ -0.49
LINC00554-201ENST00000564841 C9orf139Q6ZV77 190 aa12□□□□□ -0.49
LINC00554-201ENST00000564841 NDUFA7O95182 113 aa12□□□□□ -0.49
LINC00554-201ENST00000564841 MSMBP08118 114 aa12□□□□□ -0.49
LINC00554-201ENST00000564841 COX6CP09669 75 aa12□□□□□ -0.49
LINC00554-201ENST00000564841 TIMM21Q9BVV7 248 aa12□□□□□ -0.49
LINC00554-201ENST00000564841 ITPR3Q14573 2671 aa12□□□□□ -0.49
LINC00554-201ENST00000564841 CYSTM1Q9H1C7 97 aa11.99□□□□□ -0.49
LINC00554-201ENST00000564841 NACAE9PAV3 2078 aa11.99□□□□□ -0.49
LINC00554-201ENST00000564841 TRAV12-2A0A075B6T6 113 aa11.99□□□□□ -0.49
LINC00554-201ENST00000564841 BLCAPP62952 87 aa11.99□□□□□ -0.49
LINC00554-201ENST00000564841 LINC01600Q96MT4 127 aa11.99□□□□□ -0.49
LINC00554-201ENST00000564841 NDUFA12Q9UI09 145 aa11.99□□□□□ -0.49
LINC00554-201ENST00000564841 IGHV3-73A0A0B4J1V6 119 aa11.98□□□□□ -0.49
LINC00554-201ENST00000564841 C3orf22Q8N5N4 141 aa11.98□□□□□ -0.49
LINC00554-201ENST00000564841 ZNF469Q96JG9 3925 aaPredicted RBP11.98□□□□□ -0.49
LINC00554-201ENST00000564841 FAM19A5Q7Z5A7 132 aaPredicted RBP11.97□□□□□ -0.49
LINC00554-201ENST00000564841 EDA2RQ9HAV5 297 aa11.97□□□□□ -0.49
LINC00554-201ENST00000564841 LENEPQ9Y5L5 61 aa11.97□□□□□ -0.49
LINC00554-201ENST00000564841 M0QY20 66 aa11.97□□□□□ -0.49
LINC00554-201ENST00000564841 Q9UF83 564 aa11.97□□□□□ -0.49
LINC00554-201ENST00000564841 C20orf203Q8NBC4 194 aa11.97□□□□□ -0.49
LINC00554-201ENST00000564841 ZNF625Q96I27 306 aaPredicted RBP11.97□□□□□ -0.49
LINC00554-201ENST00000564841 DNAJC30Q96LL9 226 aa11.97□□□□□ -0.49
LINC00554-201ENST00000564841 C2CD3Q4AC94 2353 aa11.96□□□□□ -0.49
LINC00554-201ENST00000564841 SOCS3O14543 225 aa11.96□□□□□ -0.49
LINC00554-201ENST00000564841 PF4V1P10720 104 aa11.96□□□□□ -0.49
LINC00554-201ENST00000564841 FAM240AA0A1B0GVK7 77 aa11.96□□□□□ -0.5
LINC00554-201ENST00000564841 C5orf56Q8N8D9 126 aa11.96□□□□□ -0.5
LINC00554-201ENST00000564841 FAM104AQ969W3 186 aa11.96□□□□□ -0.5
LINC00554-201ENST00000564841 WNK1Q9H4A3 2382 aa11.96□□□□□ -0.5
LINC00554-201ENST00000564841 RHOHQ15669 191 aa11.95□□□□□ -0.5
LINC00554-201ENST00000564841 TMEM61Q8N0U2 210 aa11.95□□□□□ -0.5
LINC00554-201ENST00000564841 KLK9Q9UKQ9 250 aa11.95□□□□□ -0.5
LINC00554-201ENST00000564841 OVOL1O14753 267 aa11.95□□□□□ -0.5
LINC00554-201ENST00000564841 PROK1P58294 105 aa11.95□□□□□ -0.5
LINC00554-201ENST00000564841 DEFB121Q5J5C9 76 aa11.95□□□□□ -0.5
LINC00554-201ENST00000564841 NXPH4O95158 308 aa11.95□□□□□ -0.5
LINC00554-201ENST00000564841 FAM19A4Q96LR4 140 aa11.95□□□□□ -0.5
LINC00554-201ENST00000564841 CD28P10747 220 aa11.94□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 73.4 ms