RNA–Protein interactions for RNA: ENST00000558528.1

LDLR-209, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 456 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-209ENST00000558528 ZNF705AQ6ZN79 300 aaPredicted RBP3.66□□□□□ -1.82
LDLR-209ENST00000558528 BAGE3Q86Y29 109 aa3.66□□□□□ -1.82
LDLR-209ENST00000558528 TP53TG1Q9Y2A0 90 aa3.66□□□□□ -1.82
LDLR-209ENST00000558528 TIMM8BQ9Y5J9 83 aaPredicted RBP3.66□□□□□ -1.82
LDLR-209ENST00000558528 HERC1Q15751 4861 aa3.66□□□□□ -1.82
LDLR-209ENST00000558528 KIAA1109Q2LD37 5005 aa3.66□□□□□ -1.82
LDLR-209ENST00000558528 ABCA13Q86UQ4 5058 aa3.65□□□□□ -1.83
LDLR-209ENST00000558528 HIST1H2BKO60814 126 aa3.65□□□□□ -1.83
LDLR-209ENST00000558528 HIST1H2BJP06899 126 aa3.65□□□□□ -1.83
LDLR-209ENST00000558528 MIFP14174 115 aa3.65□□□□□ -1.83
LDLR-209ENST00000558528 HIST1H2BOP23527 126 aa3.65□□□□□ -1.83
LDLR-209ENST00000558528 SRIP30626 198 aa3.65□□□□□ -1.83
LDLR-209ENST00000558528 HIST1H2BBP33778 126 aa3.65□□□□□ -1.83
LDLR-209ENST00000558528 HIST1H2BDP58876 126 aa3.65□□□□□ -1.83
LDLR-209ENST00000558528 HIST1H2BCP62807 126 aa3.65□□□□□ -1.83
LDLR-209ENST00000558528 CTAG1AP78358 180 aa3.65□□□□□ -1.83
LDLR-209ENST00000558528 HIST2H2BEQ16778 126 aa3.65□□□□□ -1.83
LDLR-209ENST00000558528 ZNF876PQ49A33 203 aa3.65□□□□□ -1.83
LDLR-209ENST00000558528 COA6Q5JTJ3 125 aaKnown RBP3.65□□□□□ -1.83
LDLR-209ENST00000558528 HIST2H2BFQ5QNW6 126 aaPredicted RBP3.65□□□□□ -1.83
LDLR-209ENST00000558528 UFSP1Q6NVU6 142 aa3.65□□□□□ -1.83
LDLR-209ENST00000558528 ZFP2Q6ZN57 461 aa3.65□□□□□ -1.83
LDLR-209ENST00000558528 LINC00336Q6ZUF6 198 aa3.65□□□□□ -1.83
LDLR-209ENST00000558528 SMIM29Q86T20 159 aa3.65□□□□□ -1.83
LDLR-209ENST00000558528 C1orf158Q8N1D5 194 aa3.65□□□□□ -1.83
LDLR-209ENST00000558528 OR10AG1Q8NH19 301 aa3.65□□□□□ -1.83
LDLR-209ENST00000558528 C11orf45Q8TAV5 145 aa3.65□□□□□ -1.83
LDLR-209ENST00000558528 RASL10AQ92737 203 aa3.65□□□□□ -1.83
LDLR-209ENST00000558528 HIST1H2BHQ93079 126 aa3.65□□□□□ -1.83
LDLR-209ENST00000558528 CHCHD1Q96BP2 118 aaKnown RBP3.65□□□□□ -1.83
LDLR-209ENST00000558528 PACRGQ96M98 296 aaPredicted RBP3.65□□□□□ -1.83
LDLR-209ENST00000558528 HIST1H2BNQ99877 126 aa3.65□□□□□ -1.83
LDLR-209ENST00000558528 HIST1H2BMQ99879 126 aa3.65□□□□□ -1.83
LDLR-209ENST00000558528 C20orf78Q9BR46 151 aa3.65□□□□□ -1.83
LDLR-209ENST00000558528 MAP1LC3AQ9H492 121 aa3.65□□□□□ -1.83
LDLR-209ENST00000558528 RETNQ9HD89 108 aa3.65□□□□□ -1.83
LDLR-209ENST00000558528 NXT2Q9NPJ8 142 aaKnown RBP3.65□□□□□ -1.83
LDLR-209ENST00000558528 MDFICQ9P1T7 246 aa3.65□□□□□ -1.83
LDLR-209ENST00000558528 CBY1Q9Y3M2 126 aa3.65□□□□□ -1.83
LDLR-209ENST00000558528 V9GYY9 64 aa3.65□□□□□ -1.83
LDLR-209ENST00000558528 LINC00614P0C842 121 aa3.64□□□□□ -1.83
LDLR-209ENST00000558528 AZU1P20160 251 aa3.64□□□□□ -1.83
LDLR-209ENST00000558528 EVI2AP22794 236 aa3.64□□□□□ -1.83
LDLR-209ENST00000558528 AKR1D1P51857 326 aa3.64□□□□□ -1.83
LDLR-209ENST00000558528 LINC01547P58512 204 aaPredicted RBP3.64□□□□□ -1.83
LDLR-209ENST00000558528 MRPL51Q4U2R6 128 aaKnown RBP3.64□□□□□ -1.83
LDLR-209ENST00000558528 Q6ZN92 141 aa3.64□□□□□ -1.83
LDLR-209ENST00000558528 FA2HQ7L5A8 372 aa3.64□□□□□ -1.83
LDLR-209ENST00000558528 AMN1Q8IY45 258 aa3.64□□□□□ -1.83
LDLR-209ENST00000558528 C14orf178Q8N769 122 aaPredicted RBP3.64□□□□□ -1.83
LDLR-209ENST00000558528 POM121L12Q8N7R1 296 aa3.64□□□□□ -1.83
LDLR-209ENST00000558528 CSNK1G2-AS1Q8NCQ2 148 aa3.64□□□□□ -1.83
LDLR-209ENST00000558528 DNAJC30Q96LL9 226 aa3.64□□□□□ -1.83
LDLR-209ENST00000558528 PRELID3AQ96N28 172 aa3.64□□□□□ -1.83
LDLR-209ENST00000558528 C18orf15Q96N68 181 aa3.64□□□□□ -1.83
LDLR-209ENST00000558528 CHCHD5Q9BSY4 110 aa3.64□□□□□ -1.83
LDLR-209ENST00000558528 JPT2Q9H910 190 aa3.64□□□□□ -1.83
LDLR-209ENST00000558528 EDA2RQ9HAV5 297 aa3.64□□□□□ -1.83
LDLR-209ENST00000558528 PYGO1Q9Y3Y4 419 aa3.64□□□□□ -1.83
LDLR-209ENST00000558528 TNFRSF18Q9Y5U5 241 aa3.64□□□□□ -1.83
LDLR-209ENST00000558528 U3KQK5 164 aa3.64□□□□□ -1.83
LDLR-209ENST00000558528 TRGV2A0A075B6R0 118 aa3.63□□□□□ -1.83
LDLR-209ENST00000558528 TRAV4A0A0B4J268 109 aa3.63□□□□□ -1.83
LDLR-209ENST00000558528 MUC21A0A0G2JKD1 596 aa3.63□□□□□ -1.83
LDLR-209ENST00000558528 MUC21A0A140T8X8 626 aa3.63□□□□□ -1.83
LDLR-209ENST00000558528 A6NDN8 102 aa3.63□□□□□ -1.83
LDLR-209ENST00000558528 D6R8Y8 96 aa3.63□□□□□ -1.83
LDLR-209ENST00000558528 MGPP08493 103 aa3.63□□□□□ -1.83
LDLR-209ENST00000558528 GIG44P09565 113 aaPredicted RBP3.63□□□□□ -1.83
LDLR-209ENST00000558528 RBMY1A1P0DJD3 496 aaKnown RBP3.63□□□□□ -1.83
LDLR-209ENST00000558528 RBMY1CP0DJD4 496 aa3.63□□□□□ -1.83
LDLR-209ENST00000558528 ESDP10768 282 aa3.63□□□□□ -1.83
LDLR-209ENST00000558528 SMAGPQ0VAQ4 97 aa3.63□□□□□ -1.83
LDLR-209ENST00000558528 RBMY1FQ15415 496 aaKnown RBP3.63□□□□□ -1.83
LDLR-209ENST00000558528 KPRPQ5T749 579 aaPredicted RBP3.63□□□□□ -1.83
LDLR-209ENST00000558528 NIT1Q86X76 327 aa3.63□□□□□ -1.83
LDLR-209ENST00000558528 C11orf72Q8NBR9 251 aa3.63□□□□□ -1.83
LDLR-209ENST00000558528 C18orf32Q8TCD1 76 aa3.63□□□□□ -1.83
LDLR-209ENST00000558528 RNF185Q96GF1 192 aa3.63□□□□□ -1.83
LDLR-209ENST00000558528 SAMD10Q9BYL1 202 aa3.63□□□□□ -1.83
LDLR-209ENST00000558528 ST20Q9HBF5 79 aa3.63□□□□□ -1.83
LDLR-209ENST00000558528 NIT2Q9NQR4 276 aa3.63□□□□□ -1.83
LDLR-209ENST00000558528 PLECQ15149 4684 aaKnown RBP3.63□□□□□ -1.83
LDLR-209ENST00000558528 IGLV7-46A0A075B6I9 117 aa3.62□□□□□ -1.83
LDLR-209ENST00000558528 TRGV1A0A0A0MS02 117 aa3.62□□□□□ -1.83
LDLR-209ENST00000558528 TRBV10-1A0A0K0K1A3 114 aa3.62□□□□□ -1.83
LDLR-209ENST00000558528 TRBV6-5A0A0K0K1A5 114 aa3.62□□□□□ -1.83
LDLR-209ENST00000558528 IGKV2-30P06310 120 aa3.62□□□□□ -1.83
LDLR-209ENST00000558528 CRYGDP07320 174 aa3.62□□□□□ -1.83
LDLR-209ENST00000558528 SPART-AS1P0CW21 52 aa3.62□□□□□ -1.83
LDLR-209ENST00000558528 KRTAP10-2P60368 255 aa3.62□□□□□ -1.83
LDLR-209ENST00000558528 ZNF56Q15929 161 aa3.62□□□□□ -1.83
LDLR-209ENST00000558528 ORMDL2Q53FV1 153 aa3.62□□□□□ -1.83
LDLR-209ENST00000558528 C5orf47Q569G3 176 aa3.62□□□□□ -1.83
LDLR-209ENST00000558528 XP32Q5T750 250 aa3.62□□□□□ -1.83
LDLR-209ENST00000558528 FAM74A4Q5TZK3 123 aa3.62□□□□□ -1.83
LDLR-209ENST00000558528 Q6ZQT7 251 aa3.62□□□□□ -1.83
LDLR-209ENST00000558528 Q8N8P6 123 aa3.62□□□□□ -1.83
LDLR-209ENST00000558528 OR11H2Q8NH07 326 aa3.62□□□□□ -1.83
LDLR-209ENST00000558528 MRAPQ8TCY5 172 aa3.62□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 63.8 ms