RNA–Protein interactions for RNA: ENST00000556534.1

SCFD1-221, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 864 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-221ENST00000556534 GCC2Q8IWJ2 1684 aa1.1□□□□□ -2.23
SCFD1-221ENST00000556534 A0A0G2JMZ2 1700 aa1.09□□□□□ -2.23
SCFD1-221ENST00000556534 MYH6P13533 1939 aa1.09□□□□□ -2.23
SCFD1-221ENST00000556534 KMT2CQ8NEZ4 4911 aaKnown RBP1.09□□□□□ -2.23
SCFD1-221ENST00000556534 RGPD8O14715 1765 aaPredicted RBP1.09□□□□□ -2.23
SCFD1-221ENST00000556534 BCORQ6W2J9 1755 aa1.09□□□□□ -2.23
SCFD1-221ENST00000556534 RGPD5Q99666 1765 aa1.09□□□□□ -2.23
SCFD1-221ENST00000556534 RYR1P21817 5038 aa1.09□□□□□ -2.23
SCFD1-221ENST00000556534 LOC107984156A0A0G2JMH3 177 aa1.09□□□□□ -2.23
SCFD1-221ENST00000556534 JMJD7-PLA2G4BH0Y9G9 81 aa1.09□□□□□ -2.23
SCFD1-221ENST00000556534 IGLV3-1P01715 115 aa1.09□□□□□ -2.23
SCFD1-221ENST00000556534 SNRPD3P62318 126 aaKnown RBP1.09□□□□□ -2.23
SCFD1-221ENST00000556534 PSPHP78330 225 aa1.09□□□□□ -2.23
SCFD1-221ENST00000556534 QRFPP83859 136 aa1.09□□□□□ -2.23
SCFD1-221ENST00000556534 NEDD8Q15843 81 aa1.09□□□□□ -2.23
SCFD1-221ENST00000556534 ARL17AQ8IVW1 177 aa1.09□□□□□ -2.23
SCFD1-221ENST00000556534 OTOSQ8NHW6 89 aa1.09□□□□□ -2.23
SCFD1-221ENST00000556534 CIB3Q96Q77 187 aaPredicted RBP1.09□□□□□ -2.23
SCFD1-221ENST00000556534 MRPL57Q9BQC6 102 aaKnown RBP1.09□□□□□ -2.23
SCFD1-221ENST00000556534 WFDC10AQ9H1F0 79 aa1.09□□□□□ -2.23
SCFD1-221ENST00000556534 BANF2Q9H503 90 aa1.09□□□□□ -2.23
SCFD1-221ENST00000556534 CALML5Q9NZT1 146 aa1.09□□□□□ -2.23
SCFD1-221ENST00000556534 NBASA2RRP1 2371 aa1.09□□□□□ -2.23
SCFD1-221ENST00000556534 SNRNP200O75643 2136 aaKnown RBP1.09□□□□□ -2.24
SCFD1-221ENST00000556534 CITO14578 2027 aa1.08□□□□□ -2.24
SCFD1-221ENST00000556534 IQGAP3Q86VI3 1631 aa1.08□□□□□ -2.24
SCFD1-221ENST00000556534 A6NN06 94 aa1.08□□□□□ -2.24
SCFD1-221ENST00000556534 CD3DP04234 171 aa1.08□□□□□ -2.24
SCFD1-221ENST00000556534 ARPC4P59998 168 aa1.08□□□□□ -2.24
SCFD1-221ENST00000556534 SMCO1Q147U7 214 aa1.08□□□□□ -2.24
SCFD1-221ENST00000556534 IZUMO2Q6UXV1 221 aa1.08□□□□□ -2.24
SCFD1-221ENST00000556534 TMEM91Q6ZNR0 172 aa1.08□□□□□ -2.24
SCFD1-221ENST00000556534 PLPP5Q8NEB5 264 aa1.08□□□□□ -2.24
SCFD1-221ENST00000556534 LZICQ8WZA0 190 aa1.08□□□□□ -2.24
SCFD1-221ENST00000556534 LPAR5Q9H1C0 372 aa1.08□□□□□ -2.24
SCFD1-221ENST00000556534 TNFSF18Q9UNG2 199 aa1.08□□□□□ -2.24
SCFD1-221ENST00000556534 DNAJC15Q9Y5T4 150 aa1.08□□□□□ -2.24
SCFD1-221ENST00000556534 NRXN2Q9P2S2 1712 aa1.08□□□□□ -2.24
SCFD1-221ENST00000556534 CCNB3Q8WWL7 1395 aa1.08□□□□□ -2.24
SCFD1-221ENST00000556534 RYR3Q15413 4870 aa1.07□□□□□ -2.24
SCFD1-221ENST00000556534 CSPG4Q6UVK1 2322 aa1.07□□□□□ -2.24
SCFD1-221ENST00000556534 SCN7AQ01118 1682 aa1.07□□□□□ -2.24
SCFD1-221ENST00000556534 IFT172Q9UG01 1749 aa1.07□□□□□ -2.24
SCFD1-221ENST00000556534 AHCTF1Q8WYP5 2266 aa1.07□□□□□ -2.24
SCFD1-221ENST00000556534 IGLV3-32A0A0A0MS00 114 aa1.07□□□□□ -2.24
SCFD1-221ENST00000556534 EDF1O60869 148 aaKnown RBP1.07□□□□□ -2.24
SCFD1-221ENST00000556534 ETV6P41212 452 aa1.07□□□□□ -2.24
SCFD1-221ENST00000556534 AKR1D1P51857 326 aa1.07□□□□□ -2.24
SCFD1-221ENST00000556534 HIST1H1AQ02539 215 aaPredicted RBP1.07□□□□□ -2.24
SCFD1-221ENST00000556534 SMIM21Q3B7S5 101 aa1.07□□□□□ -2.24
SCFD1-221ENST00000556534 SBSPONQ8IVN8 264 aa1.07□□□□□ -2.24
SCFD1-221ENST00000556534 C5orf17Q8NAS9 161 aa1.07□□□□□ -2.24
SCFD1-221ENST00000556534 OR4S1Q8NGB4 309 aa1.07□□□□□ -2.24
SCFD1-221ENST00000556534 AP1S3Q96PC3 154 aa1.07□□□□□ -2.24
SCFD1-221ENST00000556534 METTL1Q9UBP6 276 aaKnown RBP1.07□□□□□ -2.24
SCFD1-221ENST00000556534 HYDINQ4G0P3 5121 aa1.07□□□□□ -2.24
SCFD1-221ENST00000556534 CACNA1EQ15878 2313 aa1.07□□□□□ -2.24
SCFD1-221ENST00000556534 MAP2P11137 1827 aaKnown RBP1.07□□□□□ -2.24
SCFD1-221ENST00000556534 SPTBN1Q01082 2364 aaKnown RBP1.07□□□□□ -2.24
SCFD1-221ENST00000556534 PLXNA2O75051 1894 aa1.07□□□□□ -2.24
SCFD1-221ENST00000556534 ZNF469Q96JG9 3925 aaPredicted RBP1.07□□□□□ -2.24
SCFD1-221ENST00000556534 MXRA5Q9NR99 2828 aa1.07□□□□□ -2.24
SCFD1-221ENST00000556534 ZANQ9Y493 2812 aa1.07□□□□□ -2.24
SCFD1-221ENST00000556534 ROS1P08922 2347 aa1.06□□□□□ -2.24
SCFD1-221ENST00000556534 TACC2O95359 2948 aa1.06□□□□□ -2.24
SCFD1-221ENST00000556534 TENM3Q9P273 2699 aa1.06□□□□□ -2.24
SCFD1-221ENST00000556534 A0A0J9YY99 117 aa1.06□□□□□ -2.24
SCFD1-221ENST00000556534 LOC730098B7Z3J9 87 aa1.06□□□□□ -2.24
SCFD1-221ENST00000556534 CDC42EP2O14613 210 aa1.06□□□□□ -2.24
SCFD1-221ENST00000556534 HLA-DRB4P13762 266 aa1.06□□□□□ -2.24
SCFD1-221ENST00000556534 CKS2P33552 79 aa1.06□□□□□ -2.24
SCFD1-221ENST00000556534 PCBD1P61457 104 aa1.06□□□□□ -2.24
SCFD1-221ENST00000556534 LSM3P62310 102 aaKnown RBP1.06□□□□□ -2.24
SCFD1-221ENST00000556534 ASB16-AS1Q495Z4 193 aa1.06□□□□□ -2.24
SCFD1-221ENST00000556534 GLYATL3Q5SZD4 288 aa1.06□□□□□ -2.24
SCFD1-221ENST00000556534 HLA-DRB4X5D2U9 266 aa1.06□□□□□ -2.24
SCFD1-221ENST00000556534 ZNF831Q5JPB2 1677 aa1.06□□□□□ -2.24
SCFD1-221ENST00000556534 LAMB1P07942 1786 aa1.06□□□□□ -2.24
SCFD1-221ENST00000556534 CPSF1Q10570 1443 aaKnown RBP1.06□□□□□ -2.24
SCFD1-221ENST00000556534 SVEP1Q4LDE5 3571 aa1.06□□□□□ -2.24
SCFD1-221ENST00000556534 MGAM2Q2M2H8 2515 aa1.06□□□□□ -2.24
SCFD1-221ENST00000556534 PLXNA1Q9UIW2 1896 aa1.05□□□□□ -2.24
SCFD1-221ENST00000556534 ATG2AQ2TAZ0 1938 aa1.05□□□□□ -2.24
SCFD1-221ENST00000556534 APC2O95996 2303 aa1.05□□□□□ -2.24
SCFD1-221ENST00000556534 ACACAQ13085 2346 aa1.05□□□□□ -2.24
SCFD1-221ENST00000556534 TENM2Q9NT68 2774 aa1.05□□□□□ -2.24
SCFD1-221ENST00000556534 FAM208AQ9UK61 1670 aaKnown RBP1.05□□□□□ -2.24
SCFD1-221ENST00000556534 TRAV23DV6A0A075B6W5 121 aa1.05□□□□□ -2.24
SCFD1-221ENST00000556534 MPC1LP0DKB6 136 aa1.05□□□□□ -2.24
SCFD1-221ENST00000556534 HIST1H1BP16401 226 aaKnown RBP1.05□□□□□ -2.24
SCFD1-221ENST00000556534 DNAJB13P59910 316 aa1.05□□□□□ -2.24
SCFD1-221ENST00000556534 S100A12P80511 92 aa1.05□□□□□ -2.24
SCFD1-221ENST00000556534 CSAG1Q6PB30 78 aa1.05□□□□□ -2.24
SCFD1-221ENST00000556534 LINC00299Q6ZSB3 139 aa1.05□□□□□ -2.24
SCFD1-221ENST00000556534 SMIM3Q9BZL3 60 aa1.05□□□□□ -2.24
SCFD1-221ENST00000556534 COMMD3Q9UBI1 195 aa1.05□□□□□ -2.24
SCFD1-221ENST00000556534 DDX60LQ5H9U9 1706 aaKnown RBP1.05□□□□□ -2.24
SCFD1-221ENST00000556534 DOT1LQ8TEK3 1739 aa1.05□□□□□ -2.24
SCFD1-221ENST00000556534 ANK2Q01484 3957 aa1.05□□□□□ -2.24
SCFD1-221ENST00000556534 PPLO60437 1756 aa1.05□□□□□ -2.24
Retrieved 100 of 20,778 RNA–protein pairs in 496.8 ms