RNA–Protein interactions for RNA: ENST00000555759.1

SYNE3-204, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 2

Gene SYNE3, Length 5,493 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-204ENST00000555759 M0QY20 66 aa13.19□□□□□ -0.3
SYNE3-204ENST00000555759 PRB2P02812 416 aaPredicted RBP13.19□□□□□ -0.3
SYNE3-204ENST00000555759 NCOR1O75376 2440 aa13.19□□□□□ -0.3
SYNE3-204ENST00000555759 IGHV4OR15-8A0A075B7B6 117 aa13.19□□□□□ -0.3
SYNE3-204ENST00000555759 A0A087WW49 117 aa13.19□□□□□ -0.3
SYNE3-204ENST00000555759 MRPS36P82909 103 aaKnown RBP13.19□□□□□ -0.3
SYNE3-204ENST00000555759 DEFB136Q30KP8 78 aa13.19□□□□□ -0.3
SYNE3-204ENST00000555759 Q6JHZ5 121 aa13.19□□□□□ -0.3
SYNE3-204ENST00000555759 ZFAND2AQ8N6M9 145 aa13.18□□□□□ -0.3
SYNE3-204ENST00000555759 SIRPDQ9H106 197 aa13.18□□□□□ -0.3
SYNE3-204ENST00000555759 RIF1Q5UIP0 2472 aaKnown RBP13.18□□□□□ -0.3
SYNE3-204ENST00000555759 A0A0U1RQV1 116 aa13.18□□□□□ -0.3
SYNE3-204ENST00000555759 SMIM9A6NGZ8 99 aa13.18□□□□□ -0.3
SYNE3-204ENST00000555759 ODF3BA8MYP8 253 aa13.18□□□□□ -0.3
SYNE3-204ENST00000555759 PIK3CD-AS1Q5SR53 167 aa13.18□□□□□ -0.3
SYNE3-204ENST00000555759 SEM1Q6ZVN7 128 aa13.18□□□□□ -0.3
SYNE3-204ENST00000555759 LINC00467Q9BRT7 94 aa13.18□□□□□ -0.3
SYNE3-204ENST00000555759 LINC00526Q96FQ7 95 aa13.17□□□□□ -0.3
SYNE3-204ENST00000555759 IGHV4-38-2P0DP08 117 aa13.17□□□□□ -0.3
SYNE3-204ENST00000555759 ADAMTS9Q9P2N4 1935 aa13.16□□□□□ -0.3
SYNE3-204ENST00000555759 UBE2D1P51668 147 aa13.16□□□□□ -0.3
SYNE3-204ENST00000555759 SMAD5-AS1Q9Y6J3 95 aa13.16□□□□□ -0.3
SYNE3-204ENST00000555759 ZGRF1Q86YA3 2104 aa13.16□□□□□ -0.3
SYNE3-204ENST00000555759 ZFAND3Q9H8U3 227 aa13.15□□□□□ -0.3
SYNE3-204ENST00000555759 CACNA1BQ00975 2339 aa13.15□□□□□ -0.3
SYNE3-204ENST00000555759 KIAA1549LQ6ZVL6 1849 aa13.15□□□□□ -0.3
SYNE3-204ENST00000555759 DYSFO75923 2080 aa13.15□□□□□ -0.3
SYNE3-204ENST00000555759 SMIM26A0A096LP01 95 aa13.15□□□□□ -0.3
SYNE3-204ENST00000555759 MAPK1IP1LQ8NDC0 245 aa13.15□□□□□ -0.3
SYNE3-204ENST00000555759 UBE2D3P61077 147 aa13.15□□□□□ -0.3
SYNE3-204ENST00000555759 UBE2D2P62837 147 aa13.15□□□□□ -0.3
SYNE3-204ENST00000555759 SPTSSBQ8NFR3 76 aa13.14□□□□□ -0.31
SYNE3-204ENST00000555759 FSTL3O95633 263 aa13.14□□□□□ -0.31
SYNE3-204ENST00000555759 KIF26AQ9ULI4 1882 aaPredicted RBP13.14□□□□□ -0.31
SYNE3-204ENST00000555759 Q6ZS46 218 aa13.14□□□□□ -0.31
SYNE3-204ENST00000555759 IGF2-ASQ6U949 168 aa13.13□□□□□ -0.31
SYNE3-204ENST00000555759 PIP4P1Q86T03 277 aa13.13□□□□□ -0.31
SYNE3-204ENST00000555759 TMEM131Q92545 1883 aa13.13□□□□□ -0.31
SYNE3-204ENST00000555759 IGHV4-61A0A0C4DH41 118 aa13.13□□□□□ -0.31
SYNE3-204ENST00000555759 SPART-AS1P0CW21 52 aa13.13□□□□□ -0.31
SYNE3-204ENST00000555759 COL4A4P53420 1690 aaPredicted RBP13.13□□□□□ -0.31
SYNE3-204ENST00000555759 ZFP36P26651 326 aaKnown RBP13.12□□□□□ -0.31
SYNE3-204ENST00000555759 POLR2KP53803 58 aaKnown RBP13.12□□□□□ -0.31
SYNE3-204ENST00000555759 C1orf195Q5TG92 126 aa13.12□□□□□ -0.31
SYNE3-204ENST00000555759 GRNP28799 593 aaKnown RBP13.12□□□□□ -0.31
SYNE3-204ENST00000555759 C20orf173Q96LM9 149 aa13.12□□□□□ -0.31
SYNE3-204ENST00000555759 SLPIP03973 132 aa13.12□□□□□ -0.31
SYNE3-204ENST00000555759 Q96MF0 132 aa13.12□□□□□ -0.31
SYNE3-204ENST00000555759 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP13.11□□□□□ -0.315e-7■■■■■ 28.1
SYNE3-204ENST00000555759 FREM1Q5H8C1 2179 aa13.11□□□□□ -0.31
SYNE3-204ENST00000555759 IGF1P05019 195 aa13.1□□□□□ -0.31
SYNE3-204ENST00000555759 EBI3Q14213 229 aa13.1□□□□□ -0.31
SYNE3-204ENST00000555759 PLCE1Q9P212 2302 aa13.1□□□□□ -0.31
SYNE3-204ENST00000555759 TSHBP01222 138 aa13.1□□□□□ -0.31
SYNE3-204ENST00000555759 DSCAML1Q8TD84 2053 aa13.1□□□□□ -0.31
SYNE3-204ENST00000555759 K7EQG2 157 aa13.09□□□□□ -0.31
SYNE3-204ENST00000555759 SERP1Q9Y6X1 66 aa13.09□□□□□ -0.31
SYNE3-204ENST00000555759 PRO0255Q9UI72 69 aa13.09□□□□□ -0.31
SYNE3-204ENST00000555759 GPR179Q6PRD1 2367 aa13.09□□□□□ -0.31
SYNE3-204ENST00000555759 CLPSL1A2RUU4 121 aa13.09□□□□□ -0.31
SYNE3-204ENST00000555759 A6NDX4 124 aa13.09□□□□□ -0.31
SYNE3-204ENST00000555759 WFDC11Q8NEX6 87 aa13.09□□□□□ -0.31
SYNE3-204ENST00000555759 COL6A6A6NMZ7 2263 aa13.09□□□□□ -0.31
SYNE3-204ENST00000555759 DEFB121Q5J5C9 76 aa13.08□□□□□ -0.32
SYNE3-204ENST00000555759 LY6LH3BQJ8 138 aa13.08□□□□□ -0.32
SYNE3-204ENST00000555759 C4orf3Q8WVX3 66 aa13.07□□□□□ -0.32
SYNE3-204ENST00000555759 MAP6D1Q9H9H5 199 aa13.07□□□□□ -0.32
SYNE3-204ENST00000555759 FAM19A3Q7Z5A8 133 aa13.07□□□□□ -0.32
SYNE3-204ENST00000555759 RNASE3P12724 160 aaKnown RBP13.06□□□□□ -0.32
SYNE3-204ENST00000555759 PCNX1Q96RV3 2341 aa13.06□□□□□ -0.32
SYNE3-204ENST00000555759 HRCT1Q6UXD1 115 aa13.06□□□□□ -0.32
SYNE3-204ENST00000555759 ABCA4P78363 2273 aa13.06□□□□□ -0.32
SYNE3-204ENST00000555759 C11orf21Q9P2W6 132 aa13.06□□□□□ -0.32
SYNE3-204ENST00000555759 PCNX3Q9H6A9 2034 aa13.06□□□□□ -0.32
SYNE3-204ENST00000555759 IGIPA6NJ69 53 aa13.06□□□□□ -0.32
SYNE3-204ENST00000555759 DAZAP2Q15038 168 aaPredicted RBP13.06□□□□□ -0.32
SYNE3-204ENST00000555759 GAS8-AS1O95177 125 aa13.05□□□□□ -0.32
SYNE3-204ENST00000555759 SNURFQ9Y675 71 aa13.05□□□□□ -0.32
SYNE3-204ENST00000555759 TNCP24821 2201 aa13.04□□□□□ -0.32
SYNE3-204ENST00000555759 C9orf66Q5T8R8 295 aa13.04□□□□□ -0.32
SYNE3-204ENST00000555759 SCXQ7RTU7 201 aa13.04□□□□□ -0.32
SYNE3-204ENST00000555759 LYRM9A8MSI8 78 aa13.04□□□□□ -0.32
SYNE3-204ENST00000555759 FBXL19-AS1Q494R0 122 aa13.04□□□□□ -0.32
SYNE3-204ENST00000555759 TRAV7A0A075B6U4 112 aa13.03□□□□□ -0.32
SYNE3-204ENST00000555759 KLK12Q9UKR0 248 aa13.03□□□□□ -0.32
SYNE3-204ENST00000555759 MED12LQ86YW9 2145 aa13.03□□□□□ -0.32
SYNE3-204ENST00000555759 IGHV4-30-2A0A087WSY4 118 aa13.02□□□□□ -0.32
SYNE3-204ENST00000555759 C6orf99Q4VX62 202 aa13.02□□□□□ -0.32
SYNE3-204ENST00000555759 Q6ZTI0 123 aa13.02□□□□□ -0.33
SYNE3-204ENST00000555759 FAM19A5Q7Z5A7 132 aaPredicted RBP13.02□□□□□ -0.33
SYNE3-204ENST00000555759 MED13LQ71F56 2210 aa13.02□□□□□ -0.33
SYNE3-204ENST00000555759 UBE2D4Q9Y2X8 147 aa13.02□□□□□ -0.33
SYNE3-204ENST00000555759 SMIM11BQ8TCY0 68 aa13.01□□□□□ -0.33
SYNE3-204ENST00000555759 LINC01548A6NM66 108 aa13.01□□□□□ -0.33
SYNE3-204ENST00000555759 A0A096LNJ9 63 aa13.01□□□□□ -0.33
SYNE3-204ENST00000555759 A8MZ25 164 aa13□□□□□ -0.33
SYNE3-204ENST00000555759 KLLNB2CW77 178 aa13□□□□□ -0.33
SYNE3-204ENST00000555759 CCKP06307 115 aa13□□□□□ -0.33
SYNE3-204ENST00000555759 REG3AQ06141 175 aa13□□□□□ -0.33
SYNE3-204ENST00000555759 C9orf85Q96MD7 179 aa13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 78.5 ms