RNA–Protein interactions for RNA: ENST00000554607.1

FOXA1-204, Transcript of forkhead box A1, humanhuman

TSL 3

Gene FOXA1, Length 789 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1-204ENST00000554607 MAJINQ3KP22 176 aa15.23■□□□□ 0.03
FOXA1-204ENST00000554607 C15orf56Q8N910 161 aa15.23■□□□□ 0.03
FOXA1-204ENST00000554607 TRGC1P0CF51 173 aa15.22■□□□□ 0.03
FOXA1-204ENST00000554607 AMTP48728 403 aa15.22■□□□□ 0.03
FOXA1-204ENST00000554607 OR2D3Q8NGH3 330 aa15.22■□□□□ 0.03
FOXA1-204ENST00000554607 F2Z2F3 143 aa15.21■□□□□ 0.03
FOXA1-204ENST00000554607 PRR3P79522 188 aaKnown RBP15.21■□□□□ 0.03
FOXA1-204ENST00000554607 IGKV2-24A0A0C4DH68 120 aa15.2■□□□□ 0.02
FOXA1-204ENST00000554607 XKRY2A2RUG3 117 aa15.2■□□□□ 0.02
FOXA1-204ENST00000554607 H2AFB1P0C5Y9 115 aa15.2■□□□□ 0.02
FOXA1-204ENST00000554607 PRSS3P2Q8NHM4 247 aa15.2■□□□□ 0.02
FOXA1-204ENST00000554607 STPG4Q8N801 248 aa15.19■□□□□ 0.02
FOXA1-204ENST00000554607 HIGD2BQ4VC39 106 aa15.18■□□□□ 0.02
FOXA1-204ENST00000554607 IGKV3OR2-268A0A0C4DH90 116 aa15.17■□□□□ 0.02
FOXA1-204ENST00000554607 A0A0J9YXV3 536 aa15.17■□□□□ 0.02
FOXA1-204ENST00000554607 CENPWQ5EE01 88 aa15.17■□□□□ 0.02
FOXA1-204ENST00000554607 C11orf52Q96A22 123 aa15.17■□□□□ 0.02
FOXA1-204ENST00000554607 C19orf71A6NCJ1 209 aa15.16■□□□□ 0.02
FOXA1-204ENST00000554607 ZNF345Q14585 488 aa15.16■□□□□ 0.02
FOXA1-204ENST00000554607 REG3GQ6UW15 175 aa15.16■□□□□ 0.02
FOXA1-204ENST00000554607 SPINK6Q6UWN8 80 aa15.16■□□□□ 0.02
FOXA1-204ENST00000554607 LYPD6BQ8NI32 183 aa15.16■□□□□ 0.02
FOXA1-204ENST00000554607 MANBALQ9NQG1 85 aa15.16■□□□□ 0.02
FOXA1-204ENST00000554607 LINC00474Q9P2X8 69 aa15.16■□□□□ 0.02
FOXA1-204ENST00000554607 NTF3P20783 257 aa15.15■□□□□ 0.02
FOXA1-204ENST00000554607 LYZL1Q6UWQ5 148 aa15.15■□□□□ 0.02
FOXA1-204ENST00000554607 CHCHD10Q8WYQ3 142 aaPredicted RBP15.15■□□□□ 0.02
FOXA1-204ENST00000554607 SMIM12Q96EX1 92 aa15.15■□□□□ 0.02
FOXA1-204ENST00000554607 PKIGQ9Y2B9 76 aa15.15■□□□□ 0.02
FOXA1-204ENST00000554607 GVQW2A0A096LPI5 108 aaPredicted RBP15.14■□□□□ 0.01
FOXA1-204ENST00000554607 IFNA1P01562 189 aa15.14■□□□□ 0.01
FOXA1-204ENST00000554607 AMMECR1LQ6DCA0 310 aa15.14■□□□□ 0.01
FOXA1-204ENST00000554607 KRTAP10-8P60410 259 aa15.13■□□□□ 0.01
FOXA1-204ENST00000554607 GNG13Q9P2W3 67 aa15.13■□□□□ 0.01
FOXA1-204ENST00000554607 BIN3Q9NQY0 253 aa15.12■□□□□ 0.01
FOXA1-204ENST00000554607 A0A096LNI7 61 aa15.11■□□□□ 0.01
FOXA1-204ENST00000554607 H7C423 109 aa15.11■□□□□ 0.01
FOXA1-204ENST00000554607 GNG4P50150 75 aa15.11■□□□□ 0.01
FOXA1-204ENST00000554607 EIF5AP63241 154 aaKnown RBP15.11■□□□□ 0.01
FOXA1-204ENST00000554607 CCL20P78556 96 aa15.11■□□□□ 0.01
FOXA1-204ENST00000554607 C9orf62Q8N4C0 152 aa15.11■□□□□ 0.01
FOXA1-204ENST00000554607 KANTRA0A1W2PQU2 76 aa15.1■□□□□ 0.01
FOXA1-204ENST00000554607 SMLR1H3BR10 107 aa15.1■□□□□ 0.01
FOXA1-204ENST00000554607 NCR2O95944 276 aa15.1■□□□□ 0.01
FOXA1-204ENST00000554607 RNASEKQ6P5S7 137 aaKnown RBP15.1■□□□□ 0.01
FOXA1-204ENST00000554607 BATF3Q9NR55 127 aa15.1■□□□□ 0.01
FOXA1-204ENST00000554607 RAB19A4D1S5 217 aa15.09■□□□□ 0.01
FOXA1-204ENST00000554607 ODF1Q14990 250 aa15.09■□□□□ 0.01
FOXA1-204ENST00000554607 TWIST1Q15672 202 aa15.08■□□□□ 0
FOXA1-204ENST00000554607 GATD1Q8NB37 220 aa15.08■□□□□ 0
FOXA1-204ENST00000554607 TRAV1-1A0A0B4J248 108 aa15.07■□□□□ 0
FOXA1-204ENST00000554607 HMSDA8MTL9 139 aa15.07■□□□□ 0
FOXA1-204ENST00000554607 BCL2L11O43521 198 aa15.07■□□□□ 0
FOXA1-204ENST00000554607 CTRLP40313 264 aa15.07■□□□□ 0
FOXA1-204ENST00000554607 FOXI1Q12951 378 aa15.07■□□□□ 0
FOXA1-204ENST00000554607 Q6ZRP5 223 aa15.07■□□□□ 0
FOXA1-204ENST00000554607 APCSP02743 223 aa15.06■□□□□ 0
FOXA1-204ENST00000554607 SRSF9Q13242 221 aaKnown RBP eCLIP15.06■□□□□ 0
FOXA1-204ENST00000554607 Q6ZNX1 250 aa15.06■□□□□ 0
FOXA1-204ENST00000554607 CNFNQ9BYD5 112 aa15.06■□□□□ 0
FOXA1-204ENST00000554607 TEX46H3BTG2 121 aa15.05■□□□□ -0
FOXA1-204ENST00000554607 FGF6P10767 208 aa15.05■□□□□ -0
FOXA1-204ENST00000554607 OR5A1Q8NGJ0 315 aa15.05■□□□□ -0
FOXA1-204ENST00000554607 IGKV2D-29A0A075B6S2 120 aaPredicted RBP15.04■□□□□ -0
FOXA1-204ENST00000554607 TRAV26-2A0A0B4J265 109 aa15.04■□□□□ -0
FOXA1-204ENST00000554607 IGHV1-58A0A0C4DH39 117 aa15.04■□□□□ -0
FOXA1-204ENST00000554607 IGKV2-29A2NJV5 120 aaPredicted RBP15.04■□□□□ -0
FOXA1-204ENST00000554607 PDE6DO43924 150 aa15.04■□□□□ -0
FOXA1-204ENST00000554607 ZNF25P17030 456 aaPredicted RBP15.04■□□□□ -0
FOXA1-204ENST00000554607 TEX261Q6UWH6 196 aa15.03■□□□□ -0
FOXA1-204ENST00000554607 BTF3L4Q96K17 158 aa15.03■□□□□ -0
FOXA1-204ENST00000554607 CARD19Q96LW7 228 aa15.03■□□□□ -0
FOXA1-204ENST00000554607 MED9Q9NWA0 146 aa15.03■□□□□ -0
FOXA1-204ENST00000554607 XCL1P47992 114 aa15.02■□□□□ -0
FOXA1-204ENST00000554607 MEF2BQ02080 365 aaPredicted RBP15.02■□□□□ -0
FOXA1-204ENST00000554607 SMIM15Q7Z3B0 74 aa15.02■□□□□ -0
FOXA1-204ENST00000554607 NUDT10Q8NFP7 164 aa15.02■□□□□ -0
FOXA1-204ENST00000554607 NUDT11Q96G61 164 aa15.02■□□□□ -0
FOXA1-204ENST00000554607 TMEM101Q96IK0 257 aa15.02■□□□□ -0
FOXA1-204ENST00000554607 RGS21Q2M5E4 152 aa15.01□□□□□ -0.01
FOXA1-204ENST00000554607 RPL39LQ96EH5 51 aaKnown RBP15.01□□□□□ -0.01
FOXA1-204ENST00000554607 TRBV20OR9-2A0A075B6H5 130 aa15□□□□□ -0.01
FOXA1-204ENST00000554607 LINC00959A0A1B0GUT2 108 aa14.99□□□□□ -0.01
FOXA1-204ENST00000554607 SDHAF1A6NFY7 115 aa14.99□□□□□ -0.01
FOXA1-204ENST00000554607 CCL25O15444 150 aa14.99□□□□□ -0.01
FOXA1-204ENST00000554607 ZNF561-AS1K7EIQ3 104 aa14.98□□□□□ -0.01
FOXA1-204ENST00000554607 PMCHP20382 165 aa14.98□□□□□ -0.01
FOXA1-204ENST00000554607 SYCNQ0VAF6 134 aa14.98□□□□□ -0.01
FOXA1-204ENST00000554607 LINC00526Q96FQ7 95 aa14.98□□□□□ -0.01
FOXA1-204ENST00000554607 RPP21Q9H633 154 aaKnown RBP14.98□□□□□ -0.01
FOXA1-204ENST00000554607 I3L3M4 83 aa14.97□□□□□ -0.01
FOXA1-204ENST00000554607 SS18Q15532 418 aa14.97□□□□□ -0.01
FOXA1-204ENST00000554607 EIF5AL1Q6IS14 154 aaKnown RBP14.97□□□□□ -0.01
FOXA1-204ENST00000554607 GAS8-AS1O95177 125 aa14.96□□□□□ -0.01
FOXA1-204ENST00000554607 FAM210AQ96ND0 272 aa14.96□□□□□ -0.01
FOXA1-204ENST00000554607 ISOC2Q96AB3 205 aa14.95□□□□□ -0.02
FOXA1-204ENST00000554607 FAM231BA6NCW3 169 aa14.94□□□□□ -0.02
FOXA1-204ENST00000554607 PTTG1IPP53801 180 aa14.94□□□□□ -0.02
FOXA1-204ENST00000554607 CD164L2Q6UWJ8 174 aa14.94□□□□□ -0.02
FOXA1-204ENST00000554607 RNASE7Q9H1E1 156 aaKnown RBP14.94□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 253.1 ms