RNA–Protein interactions for RNA: ENST00000553340.1

SYNE3-202, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 1 (best) BASIC

Gene SYNE3, Length 2,615 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-202ENST00000553340 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP12.83□□□□□ -0.365e-7■■■■■ 28.1
SYNE3-202ENST00000553340 IGHV4-59P01825 116 aa12.83□□□□□ -0.36
SYNE3-202ENST00000553340 SPANXA1Q9NS26 97 aa12.83□□□□□ -0.36
SYNE3-202ENST00000553340 GNLYP22749 145 aa12.82□□□□□ -0.36
SYNE3-202ENST00000553340 DUX5Q96PT3 197 aa12.82□□□□□ -0.36
SYNE3-202ENST00000553340 SORL1Q92673 2214 aa12.82□□□□□ -0.36
SYNE3-202ENST00000553340 TRAV4A0A0B4J268 109 aa12.82□□□□□ -0.36
SYNE3-202ENST00000553340 B4DSR2 109 aa12.82□□□□□ -0.36
SYNE3-202ENST00000553340 YAE1D1Q9NRH1 226 aa12.81□□□□□ -0.36
SYNE3-202ENST00000553340 GATA3P23771 443 aa12.81□□□□□ -0.36
SYNE3-202ENST00000553340 UBE2D4Q9Y2X8 147 aa12.81□□□□□ -0.36
SYNE3-202ENST00000553340 KNCNA6PVL3 124 aa12.8□□□□□ -0.36
SYNE3-202ENST00000553340 H3BT86 120 aa12.8□□□□□ -0.36
SYNE3-202ENST00000553340 H7C423 109 aa12.8□□□□□ -0.36
SYNE3-202ENST00000553340 CRLF1O75462 422 aa12.8□□□□□ -0.36
SYNE3-202ENST00000553340 CHCHD7Q9BUK0 85 aa12.8□□□□□ -0.36
SYNE3-202ENST00000553340 A8MZ25 164 aa12.8□□□□□ -0.36
SYNE3-202ENST00000553340 NPC2P61916 151 aa12.8□□□□□ -0.36
SYNE3-202ENST00000553340 GAGE5Q13069 117 aa12.8□□□□□ -0.36
SYNE3-202ENST00000553340 GAGE6Q13070 117 aa12.8□□□□□ -0.36
SYNE3-202ENST00000553340 DEFB112Q30KQ8 113 aa12.8□□□□□ -0.36
SYNE3-202ENST00000553340 HOXD3P31249 432 aaPredicted RBP12.79□□□□□ -0.36
SYNE3-202ENST00000553340 DUX3Q96PT4 197 aa12.79□□□□□ -0.36
SYNE3-202ENST00000553340 VPS13CQ709C8 3753 aa12.79□□□□□ -0.36
SYNE3-202ENST00000553340 NHLRC4P0CG21 123 aaPredicted RBP12.78□□□□□ -0.36
SYNE3-202ENST00000553340 NDUFV3P56181 108 aaKnown RBP12.78□□□□□ -0.36
SYNE3-202ENST00000553340 Q6Q795 121 aa12.78□□□□□ -0.36
SYNE3-202ENST00000553340 TMEM61Q8N0U2 210 aa12.78□□□□□ -0.36
SYNE3-202ENST00000553340 IGKV2D-29A0A075B6S2 120 aaPredicted RBP12.78□□□□□ -0.36
SYNE3-202ENST00000553340 IGKV2-29A2NJV5 120 aaPredicted RBP12.78□□□□□ -0.36
SYNE3-202ENST00000553340 TTC32Q5I0X7 151 aa12.78□□□□□ -0.36
SYNE3-202ENST00000553340 PIK3CD-AS1Q5SR53 167 aa12.78□□□□□ -0.36
SYNE3-202ENST00000553340 Q6ZSV7 163 aa12.78□□□□□ -0.36
SYNE3-202ENST00000553340 Q9UF83 564 aa12.78□□□□□ -0.36
SYNE3-202ENST00000553340 COL12A1Q99715 3063 aa12.78□□□□□ -0.36
SYNE3-202ENST00000553340 TIMM17BO60830 172 aa12.77□□□□□ -0.36
SYNE3-202ENST00000553340 IFITM1P13164 125 aa12.77□□□□□ -0.36
SYNE3-202ENST00000553340 DEFB131AP59861 70 aa12.77□□□□□ -0.37
SYNE3-202ENST00000553340 ZNF415Q09FC8 603 aa12.77□□□□□ -0.37
SYNE3-202ENST00000553340 Q6ZSN1 163 aa12.77□□□□□ -0.37
SYNE3-202ENST00000553340 C15orf53Q8NAA6 179 aa12.77□□□□□ -0.37
SYNE3-202ENST00000553340 LST1O00453 97 aa12.76□□□□□ -0.37
SYNE3-202ENST00000553340 CLEC2BQ92478 149 aa12.76□□□□□ -0.37
SYNE3-202ENST00000553340 CSPG4Q6UVK1 2322 aa12.76□□□□□ -0.37
SYNE3-202ENST00000553340 LINC00467Q9BRT7 94 aa12.76□□□□□ -0.37
SYNE3-202ENST00000553340 PRM2P04554 102 aa12.75□□□□□ -0.37
SYNE3-202ENST00000553340 UBE2E2Q96LR5 201 aa12.75□□□□□ -0.37
SYNE3-202ENST00000553340 NACAE9PAV3 2078 aa12.74□□□□□ -0.37
SYNE3-202ENST00000553340 A8MTW9 85 aa12.74□□□□□ -0.37
SYNE3-202ENST00000553340 DNAJC30Q96LL9 226 aa12.74□□□□□ -0.37
SYNE3-202ENST00000553340 CDKN2A-AS1Q9UH64 79 aa12.74□□□□□ -0.37
SYNE3-202ENST00000553340 IGHV3-38A0A0C4DH36 116 aa12.73□□□□□ -0.37
SYNE3-202ENST00000553340 NDUFA1O15239 70 aa12.73□□□□□ -0.37
SYNE3-202ENST00000553340 CIRBPQ14011 172 aaKnown RBP12.73□□□□□ -0.37
SYNE3-202ENST00000553340 SVIPQ8NHG7 77 aa12.73□□□□□ -0.37
SYNE3-202ENST00000553340 RBMY1BA6NDE4 496 aaKnown RBP12.73□□□□□ -0.37
SYNE3-202ENST00000553340 RBMY1EA6NEQ0 496 aaKnown RBP12.73□□□□□ -0.37
SYNE3-202ENST00000553340 B5MCH6 92 aa12.73□□□□□ -0.37
SYNE3-202ENST00000553340 IGHV3-53P01767 116 aa12.73□□□□□ -0.37
SYNE3-202ENST00000553340 RBMY1DP0C7P1 496 aaKnown RBP12.73□□□□□ -0.37
SYNE3-202ENST00000553340 TIRAPP58753 221 aa12.73□□□□□ -0.37
SYNE3-202ENST00000553340 DAND5Q8N907 189 aa12.73□□□□□ -0.37
SYNE3-202ENST00000553340 MRPL23Q16540 153 aaKnown RBP12.72□□□□□ -0.37
SYNE3-202ENST00000553340 SS18L2Q9UHA2 77 aa12.72□□□□□ -0.37
SYNE3-202ENST00000553340 DGAT2L7PQ6IED9 249 aa12.72□□□□□ -0.37
SYNE3-202ENST00000553340 TMEM101Q96IK0 257 aa12.72□□□□□ -0.37
SYNE3-202ENST00000553340 SPG11Q96JI7 2443 aa12.72□□□□□ -0.37
SYNE3-202ENST00000553340 IGLV5-45A0A087WSX0 123 aa12.71□□□□□ -0.37
SYNE3-202ENST00000553340 FAM240AA0A1B0GVK7 77 aa12.71□□□□□ -0.37
SYNE3-202ENST00000553340 GAGE12JA6NER3 117 aa12.71□□□□□ -0.38
SYNE3-202ENST00000553340 GAGE7O76087 117 aa12.71□□□□□ -0.38
SYNE3-202ENST00000553340 GAGE12FP0CL80 117 aa12.71□□□□□ -0.38
SYNE3-202ENST00000553340 GAGE12GP0CL81 117 aa12.71□□□□□ -0.38
SYNE3-202ENST00000553340 GAGE12IP0CL82 117 aa12.71□□□□□ -0.38
SYNE3-202ENST00000553340 GAGE4Q13068 117 aa12.71□□□□□ -0.38
SYNE3-202ENST00000553340 DEFB121Q5J5C9 76 aa12.71□□□□□ -0.38
SYNE3-202ENST00000553340 LINC01587Q99440 93 aa12.7□□□□□ -0.38
SYNE3-202ENST00000553340 VPREB3Q9UKI3 123 aa12.7□□□□□ -0.38
SYNE3-202ENST00000553340 CREBBPQ92793 2442 aa12.69□□□□□ -0.38
SYNE3-202ENST00000553340 SLURP1P55000 103 aa12.69□□□□□ -0.38
SYNE3-202ENST00000553340 MAP1AP78559 2803 aaPredicted RBP12.69□□□□□ -0.38
SYNE3-202ENST00000553340 LINC01356Q8N9X3 169 aa12.69□□□□□ -0.38
SYNE3-202ENST00000553340 C11orf72Q8NBR9 251 aa12.69□□□□□ -0.38
SYNE3-202ENST00000553340 DSCR9P59020 149 aa12.68□□□□□ -0.38
SYNE3-202ENST00000553340 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP12.68□□□□□ -0.38
SYNE3-202ENST00000553340 CITED2Q99967 270 aaPredicted RBP12.68□□□□□ -0.38
SYNE3-202ENST00000553340 PRORYQ9H606 182 aa12.68□□□□□ -0.38
SYNE3-202ENST00000553340 NCOR2Q9Y618 2525 aa12.68□□□□□ -0.38
SYNE3-202ENST00000553340 HERVK_113P63121 156 aa12.67□□□□□ -0.38
SYNE3-202ENST00000553340 BEAN1Q3B7T3 259 aa12.67□□□□□ -0.38
SYNE3-202ENST00000553340 LINC00308Q8TCZ7 52 aa12.67□□□□□ -0.38
SYNE3-202ENST00000553340 Q9H8V8 135 aa12.67□□□□□ -0.38
SYNE3-202ENST00000553340 ZNF702PQ9H963 129 aa12.67□□□□□ -0.38
SYNE3-202ENST00000553340 CRYBG3Q68DQ2 2970 aa12.67□□□□□ -0.38
SYNE3-202ENST00000553340 DEFB136Q30KP8 78 aa12.67□□□□□ -0.38
SYNE3-202ENST00000553340 CCDC179H3BU77 68 aa12.66□□□□□ -0.38
SYNE3-202ENST00000553340 RS1O15537 224 aa12.66□□□□□ -0.38
SYNE3-202ENST00000553340 COX6A2Q02221 97 aa12.66□□□□□ -0.38
SYNE3-202ENST00000553340 IGLV5-39A0A0G2JS06 123 aa12.66□□□□□ -0.38
SYNE3-202ENST00000553340 IGHV3OR16-12A0A075B7B8 117 aa12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 68.7 ms