RNA–Protein interactions for RNA: ENST00000553128.5

VPS29-211, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 449 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-211ENST00000553128 INMT-MINDY4F8WBC2 141 aa7.76□□□□□ -1.17
VPS29-211ENST00000553128 KRTAP1-4P0C5Y4 121 aa7.76□□□□□ -1.17
VPS29-211ENST00000553128 ENKURQ8TC29 256 aa7.76□□□□□ -1.17
VPS29-211ENST00000553128 NKX6-2Q9C056 277 aaPredicted RBP7.76□□□□□ -1.17
VPS29-211ENST00000553128 SSNA1O43805 119 aa7.75□□□□□ -1.17
VPS29-211ENST00000553128 IGLV7-43P04211 117 aa7.75□□□□□ -1.17
VPS29-211ENST00000553128 XCL1P47992 114 aa7.75□□□□□ -1.17
VPS29-211ENST00000553128 SYCNQ0VAF6 134 aa7.75□□□□□ -1.17
VPS29-211ENST00000553128 KRTAP11-1Q8IUC1 163 aa7.75□□□□□ -1.17
VPS29-211ENST00000553128 FER1L6-AS1Q8NA97 138 aa7.75□□□□□ -1.17
VPS29-211ENST00000553128 DIRC1Q969H9 104 aa7.75□□□□□ -1.17
VPS29-211ENST00000553128 IGKV2D-29A0A075B6S2 120 aaPredicted RBP7.74□□□□□ -1.17
VPS29-211ENST00000553128 IGKV2-29A2NJV5 120 aaPredicted RBP7.74□□□□□ -1.17
VPS29-211ENST00000553128 H0Y9J4 135 aa7.74□□□□□ -1.17
VPS29-211ENST00000553128 BCL2P10415 239 aa7.74□□□□□ -1.17
VPS29-211ENST00000553128 AKR1C3P42330 323 aa7.74□□□□□ -1.17
VPS29-211ENST00000553128 COTL1Q14019 142 aa7.74□□□□□ -1.17
VPS29-211ENST00000553128 C9orf116Q5BN46 136 aaPredicted RBP7.74□□□□□ -1.17
VPS29-211ENST00000553128 RASL11AQ6T310 242 aa7.74□□□□□ -1.17
VPS29-211ENST00000553128 MLST8Q9BVC4 326 aa7.74□□□□□ -1.17
VPS29-211ENST00000553128 PKIGQ9Y2B9 76 aa7.74□□□□□ -1.17
VPS29-211ENST00000553128 IGLV1-50A0A075B6I6 118 aa7.73□□□□□ -1.17
VPS29-211ENST00000553128 IGHV1-58A0A0C4DH39 117 aa7.73□□□□□ -1.17
VPS29-211ENST00000553128 NIT2Q9NQR4 276 aa7.73□□□□□ -1.17
VPS29-211ENST00000553128 LOC107984640A0A0U1RRK4 108 aa7.72□□□□□ -1.17
VPS29-211ENST00000553128 CCL25O15444 150 aa7.72□□□□□ -1.17
VPS29-211ENST00000553128 CST9LP1Q5W188 147 aa7.72□□□□□ -1.17
VPS29-211ENST00000553128 RPL7L1Q6DKI1 246 aaKnown RBP7.72□□□□□ -1.17
VPS29-211ENST00000553128 RNASEKQ6P5S7 137 aaKnown RBP7.72□□□□□ -1.17
VPS29-211ENST00000553128 Q6ZNX1 250 aa7.72□□□□□ -1.17
VPS29-211ENST00000553128 TPPP3Q9BW30 176 aa7.72□□□□□ -1.17
VPS29-211ENST00000553128 CRCT1Q9UGL9 99 aa7.72□□□□□ -1.17
VPS29-211ENST00000553128 IFITM3Q01628 133 aa7.71□□□□□ -1.18
VPS29-211ENST00000553128 AMMECR1LQ6DCA0 310 aa7.71□□□□□ -1.18
VPS29-211ENST00000553128 STOML3Q8TAV4 291 aa7.71□□□□□ -1.18
VPS29-211ENST00000553128 MARVELD1Q9BSK0 173 aa7.71□□□□□ -1.18
VPS29-211ENST00000553128 IGLV4-69A0A075B6H9 119 aa7.7□□□□□ -1.18
VPS29-211ENST00000553128 LINC00959A0A1B0GUT2 108 aa7.7□□□□□ -1.18
VPS29-211ENST00000553128 SCO2A0A1W2PP80 73 aa7.7□□□□□ -1.18
VPS29-211ENST00000553128 MAP1LC3B2A6NCE7 125 aa7.7□□□□□ -1.18
VPS29-211ENST00000553128 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP7.7□□□□□ -1.18
VPS29-211ENST00000553128 ZNF561-AS1K7EIQ3 104 aa7.7□□□□□ -1.18
VPS29-211ENST00000553128 TSPAN13O95857 204 aa7.7□□□□□ -1.18
VPS29-211ENST00000553128 IGLC6P0CF74 106 aa7.7□□□□□ -1.18
VPS29-211ENST00000553128 FGF6P10767 208 aa7.7□□□□□ -1.18
VPS29-211ENST00000553128 NTF3P20783 257 aa7.7□□□□□ -1.18
VPS29-211ENST00000553128 FHITP49789 147 aa7.7□□□□□ -1.18
VPS29-211ENST00000553128 CAMPP49913 170 aa7.7□□□□□ -1.18
VPS29-211ENST00000553128 DEFA1P59665 94 aa7.7□□□□□ -1.18
VPS29-211ENST00000553128 MEF2BQ02080 365 aaPredicted RBP7.7□□□□□ -1.18
VPS29-211ENST00000553128 BAGE2Q86Y30 109 aa7.7□□□□□ -1.18
VPS29-211ENST00000553128 MAP1LC3BQ9GZQ8 125 aa7.7□□□□□ -1.18
VPS29-211ENST00000553128 MED28Q9H204 178 aa7.7□□□□□ -1.18
VPS29-211ENST00000553128 Q5BKY6 102 aa7.69□□□□□ -1.18
VPS29-211ENST00000553128 NUP35Q8NFH5 326 aa7.69□□□□□ -1.18
VPS29-211ENST00000553128 OR5A1Q8NGJ0 315 aa7.69□□□□□ -1.18
VPS29-211ENST00000553128 TCEAL7Q9BRU2 100 aa7.69□□□□□ -1.18
VPS29-211ENST00000553128 A0A087WZ39 114 aa7.68□□□□□ -1.18
VPS29-211ENST00000553128 PAGE4O60829 102 aa7.68□□□□□ -1.18
VPS29-211ENST00000553128 UBE2D1P51668 147 aa7.68□□□□□ -1.18
VPS29-211ENST00000553128 RPL18AQ02543 176 aaKnown RBP7.68□□□□□ -1.18
VPS29-211ENST00000553128 FAM168BA1KXE4 195 aa7.67□□□□□ -1.18
VPS29-211ENST00000553128 APOMO95445 188 aa7.67□□□□□ -1.18
VPS29-211ENST00000553128 SMCPP49901 116 aaPredicted RBP7.67□□□□□ -1.18
VPS29-211ENST00000553128 EIF5AP63241 154 aaKnown RBP7.67□□□□□ -1.18
VPS29-211ENST00000553128 GATD1Q8NB37 220 aa7.67□□□□□ -1.18
VPS29-211ENST00000553128 OPRPNQ99935 248 aaPredicted RBP7.67□□□□□ -1.18
VPS29-211ENST00000553128 TRAV1-1A0A0B4J248 108 aa7.66□□□□□ -1.18
VPS29-211ENST00000553128 AKR1C8PQ5T2L2 129 aa7.66□□□□□ -1.18
VPS29-211ENST00000553128 RPL39LQ96EH5 51 aaKnown RBP7.66□□□□□ -1.18
VPS29-211ENST00000553128 UPK1BO75841 260 aa7.65□□□□□ -1.18
VPS29-211ENST00000553128 S100A9P06702 114 aaKnown RBP7.65□□□□□ -1.18
VPS29-211ENST00000553128 CD164L2Q6UWJ8 174 aa7.65□□□□□ -1.18
VPS29-211ENST00000553128 ISOC2Q96AB3 205 aa7.65□□□□□ -1.18
VPS29-211ENST00000553128 CAMK2N2Q96S95 79 aa7.65□□□□□ -1.18
VPS29-211ENST00000553128 H7C423 109 aa7.64□□□□□ -1.19
VPS29-211ENST00000553128 APCSP02743 223 aa7.64□□□□□ -1.19
VPS29-211ENST00000553128 RPL13AP40429 203 aaKnown RBP7.64□□□□□ -1.19
VPS29-211ENST00000553128 LYZL1Q6UWQ5 148 aa7.64□□□□□ -1.19
VPS29-211ENST00000553128 OR2D3Q8NGH3 330 aa7.64□□□□□ -1.19
VPS29-211ENST00000553128 A0A1B0GV50 99 aa7.63□□□□□ -1.19
VPS29-211ENST00000553128 BCL2L11O43521 198 aa7.63□□□□□ -1.19
VPS29-211ENST00000553128 TRGC1P0CF51 173 aa7.63□□□□□ -1.19
VPS29-211ENST00000553128 TMUB2Q71RG4 321 aa7.63□□□□□ -1.19
VPS29-211ENST00000553128 KRTAP7-1Q8IUC3 87 aa7.63□□□□□ -1.19
VPS29-211ENST00000553128 BORCS7-ASMTA0A0B4J1R7 106 aa7.62□□□□□ -1.19
VPS29-211ENST00000553128 NCR2O95944 276 aa7.62□□□□□ -1.19
VPS29-211ENST00000553128 ZNF25P17030 456 aaPredicted RBP7.62□□□□□ -1.19
VPS29-211ENST00000553128 SS18Q15532 418 aa7.62□□□□□ -1.19
VPS29-211ENST00000553128 C19orf71A6NCJ1 209 aa7.61□□□□□ -1.19
VPS29-211ENST00000553128 RPL35P42766 123 aaKnown RBP7.61□□□□□ -1.19
VPS29-211ENST00000553128 FOXA3P55318 350 aaPredicted RBP7.61□□□□□ -1.19
VPS29-211ENST00000553128 FAM19A5Q7Z5A7 132 aaPredicted RBP7.61□□□□□ -1.19
VPS29-211ENST00000553128 TMEM101Q96IK0 257 aa7.61□□□□□ -1.19
VPS29-211ENST00000553128 CDC42SE2Q9NRR3 84 aa7.61□□□□□ -1.19
VPS29-211ENST00000553128 SDHAF1A6NFY7 115 aa7.6□□□□□ -1.19
VPS29-211ENST00000553128 MALP21145 153 aa7.6□□□□□ -1.19
VPS29-211ENST00000553128 C4orf48Q5BLP8 95 aa7.6□□□□□ -1.19
VPS29-211ENST00000553128 S100ZQ8WXG8 99 aa7.6□□□□□ -1.19
VPS29-211ENST00000553128 BTF3L4Q96K17 158 aa7.6□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 55.6 ms