RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 TRAV12-1A0A0B4J245 112 aa4.16□□□□□ -1.74
LIMA1-203ENST00000547825 FAM236AA0A1B0GUQ0 79 aa4.16□□□□□ -1.74
LIMA1-203ENST00000547825 FAM236BA0A1B0GV22 79 aa4.16□□□□□ -1.74
LIMA1-203ENST00000547825 UFSP1Q6NVU6 142 aa4.16□□□□□ -1.74
LIMA1-203ENST00000547825 Q6YL49 198 aa4.16□□□□□ -1.74
LIMA1-203ENST00000547825 Q6ZQT7 251 aa4.16□□□□□ -1.74
LIMA1-203ENST00000547825 LINC00311Q8N616 119 aa4.16□□□□□ -1.74
LIMA1-203ENST00000547825 BAALCQ8WXS3 180 aa4.16□□□□□ -1.74
LIMA1-203ENST00000547825 RNF5Q99942 180 aa4.16□□□□□ -1.74
LIMA1-203ENST00000547825 NIPBLQ6KC79 2804 aaeCLIP4.16□□□□□ -1.74
LIMA1-203ENST00000547825 PFN2P35080 140 aa4.16□□□□□ -1.74
LIMA1-203ENST00000547825 MRGPRG-AS1Q2M3A8 158 aa4.16□□□□□ -1.74
LIMA1-203ENST00000547825 LINC01620Q4KN68 170 aa4.16□□□□□ -1.74
LIMA1-203ENST00000547825 CHCHD5Q9BSY4 110 aa4.16□□□□□ -1.74
LIMA1-203ENST00000547825 CEMP1Q6PRD7 247 aaPredicted RBP4.15□□□□□ -1.74
LIMA1-203ENST00000547825 YAE1D1Q9NRH1 226 aa4.15□□□□□ -1.74
LIMA1-203ENST00000547825 IGLV2-11P01706 119 aa4.15□□□□□ -1.74
LIMA1-203ENST00000547825 NDUFA11Q86Y39 141 aa4.15□□□□□ -1.74
LIMA1-203ENST00000547825 BPESC1Q9GZL8 116 aa4.15□□□□□ -1.74
LIMA1-203ENST00000547825 CRYGCP07315 174 aa4.15□□□□□ -1.75
LIMA1-203ENST00000547825 PIMREGQ9BSJ6 248 aa4.15□□□□□ -1.75
LIMA1-203ENST00000547825 IGKV2D-29A0A075B6S2 120 aaPredicted RBP4.14□□□□□ -1.75
LIMA1-203ENST00000547825 TRGV1A0A0A0MS02 117 aa4.14□□□□□ -1.75
LIMA1-203ENST00000547825 IGKV3D-7A0A0C4DH55 119 aa4.14□□□□□ -1.75
LIMA1-203ENST00000547825 IGKV2-29A2NJV5 120 aaPredicted RBP4.14□□□□□ -1.75
LIMA1-203ENST00000547825 RHODO00212 210 aa4.14□□□□□ -1.75
LIMA1-203ENST00000547825 BUB3O43684 328 aa4.14□□□□□ -1.75
LIMA1-203ENST00000547825 MYCNOSP40205 109 aa4.14□□□□□ -1.75
LIMA1-203ENST00000547825 TEX15Q9BXT5 2789 aa4.14□□□□□ -1.75
LIMA1-203ENST00000547825 TRAV4A0A0B4J268 109 aa4.14□□□□□ -1.75
LIMA1-203ENST00000547825 CRPP02741 224 aa4.14□□□□□ -1.75
LIMA1-203ENST00000547825 MORN3Q6PF18 240 aaPredicted RBP4.14□□□□□ -1.75
LIMA1-203ENST00000547825 FAM110AQ9BQ89 295 aa4.14□□□□□ -1.75
LIMA1-203ENST00000547825 TRBV7-1A0A0A6YYK4 115 aa4.14□□□□□ -1.75
LIMA1-203ENST00000547825 CCDC179H3BU77 68 aa4.14□□□□□ -1.75
LIMA1-203ENST00000547825 NXPH4O95158 308 aa4.14□□□□□ -1.75
LIMA1-203ENST00000547825 NDUFV3P56181 108 aaKnown RBP4.14□□□□□ -1.75
LIMA1-203ENST00000547825 DEFB131AP59861 70 aa4.14□□□□□ -1.75
LIMA1-203ENST00000547825 MAPK1IP1LQ8NDC0 245 aa4.14□□□□□ -1.75
LIMA1-203ENST00000547825 A0A096LNJ9 63 aa4.14□□□□□ -1.75
LIMA1-203ENST00000547825 LINC01548A6NM66 108 aa4.14□□□□□ -1.75
LIMA1-203ENST00000547825 M0R1W7 72 aa4.14□□□□□ -1.75
LIMA1-203ENST00000547825 ZNF575Q86XF7 245 aa4.14□□□□□ -1.75
LIMA1-203ENST00000547825 HHLA3Q9XRX5 114 aa4.14□□□□□ -1.75
LIMA1-203ENST00000547825 ZANQ9Y493 2812 aa4.13□□□□□ -1.75
LIMA1-203ENST00000547825 IGLV11-55A0A075B6I3 123 aa4.13□□□□□ -1.75
LIMA1-203ENST00000547825 IGHV7-81A0A0B4J1V7 117 aa4.13□□□□□ -1.75
LIMA1-203ENST00000547825 A0A1W2PPR1 153 aa4.13□□□□□ -1.75
LIMA1-203ENST00000547825 SUMO4Q6EEV6 95 aa4.13□□□□□ -1.75
LIMA1-203ENST00000547825 COPS9Q8WXC6 57 aa4.13□□□□□ -1.75
LIMA1-203ENST00000547825 RNF185Q96GF1 192 aa4.13□□□□□ -1.75
LIMA1-203ENST00000547825 XCL2Q9UBD3 114 aa4.13□□□□□ -1.75
LIMA1-203ENST00000547825 SHISA9B4DS77 424 aa4.13□□□□□ -1.75
LIMA1-203ENST00000547825 IGLV1-47P01700 117 aa4.13□□□□□ -1.75
LIMA1-203ENST00000547825 BAALC-AS2P0C853 105 aa4.13□□□□□ -1.75
LIMA1-203ENST00000547825 TCTEX1D4Q5JR98 221 aa4.13□□□□□ -1.75
LIMA1-203ENST00000547825 TMEM141Q96I45 108 aa4.13□□□□□ -1.75
LIMA1-203ENST00000547825 DAZ1Q9NQZ3 744 aaKnown RBP4.13□□□□□ -1.75
LIMA1-203ENST00000547825 I3L3M4 83 aa4.13□□□□□ -1.75
LIMA1-203ENST00000547825 HTN3P15516 51 aa4.13□□□□□ -1.75
LIMA1-203ENST00000547825 KRTAP3-1Q9BYR8 98 aa4.13□□□□□ -1.75
LIMA1-203ENST00000547825 Q9H8V8 135 aa4.13□□□□□ -1.75
LIMA1-203ENST00000547825 WI2-2373I1.2A0A1W2PRP0 233 aa4.12□□□□□ -1.75
LIMA1-203ENST00000547825 IGLC6P0CF74 106 aa4.12□□□□□ -1.75
LIMA1-203ENST00000547825 UBE2E1P51965 193 aa4.12□□□□□ -1.75
LIMA1-203ENST00000547825 ZNRF2Q8NHG8 242 aa4.12□□□□□ -1.75
LIMA1-203ENST00000547825 LINC00476Q8WZB0 136 aa4.12□□□□□ -1.75
LIMA1-203ENST00000547825 C11orf21Q9P2W6 132 aa4.12□□□□□ -1.75
LIMA1-203ENST00000547825 TRBV12-3P01733 135 aa4.12□□□□□ -1.75
LIMA1-203ENST00000547825 C6orf226Q5I0X4 101 aa4.12□□□□□ -1.75
LIMA1-203ENST00000547825 MINOS1Q5TGZ0 78 aa4.12□□□□□ -1.75
LIMA1-203ENST00000547825 RASL10AQ92737 203 aa4.12□□□□□ -1.75
LIMA1-203ENST00000547825 MINOS1-NBL1R4GNA1 71 aa4.12□□□□□ -1.75
LIMA1-203ENST00000547825 ACANP16112 2415 aa4.12□□□□□ -1.75
LIMA1-203ENST00000547825 RBMY1BA6NDE4 496 aaKnown RBP4.12□□□□□ -1.75
LIMA1-203ENST00000547825 RBMY1EA6NEQ0 496 aaKnown RBP4.12□□□□□ -1.75
LIMA1-203ENST00000547825 LEPROTO15243 131 aa4.12□□□□□ -1.75
LIMA1-203ENST00000547825 RBMY1DP0C7P1 496 aaKnown RBP4.12□□□□□ -1.75
LIMA1-203ENST00000547825 RBMY1A1P0DJD3 496 aaKnown RBP4.12□□□□□ -1.75
LIMA1-203ENST00000547825 RBMY1CP0DJD4 496 aa4.12□□□□□ -1.75
LIMA1-203ENST00000547825 P0DMU3 169 aa4.12□□□□□ -1.75
LIMA1-203ENST00000547825 FAM231AP0DMU4 169 aa4.12□□□□□ -1.75
LIMA1-203ENST00000547825 FAM231CP0DMU5 169 aa4.12□□□□□ -1.75
LIMA1-203ENST00000547825 CRIP2P52943 208 aaPredicted RBP4.12□□□□□ -1.75
LIMA1-203ENST00000547825 HAMPP81172 84 aa4.12□□□□□ -1.75
LIMA1-203ENST00000547825 UNQ9165/PRO28630Q6UXU0 137 aa4.12□□□□□ -1.75
LIMA1-203ENST00000547825 TOMM6Q96B49 74 aa4.12□□□□□ -1.75
LIMA1-203ENST00000547825 Q9HAA7 133 aa4.12□□□□□ -1.75
LIMA1-203ENST00000547825 LAMTOR3Q9UHA4 124 aa4.12□□□□□ -1.75
LIMA1-203ENST00000547825 ICOSQ9Y6W8 199 aa4.12□□□□□ -1.75
LIMA1-203ENST00000547825 F8P00451 2351 aa4.11□□□□□ -1.75
LIMA1-203ENST00000547825 IGHV1OR15-1A0A075B7D0 117 aa4.11□□□□□ -1.75
LIMA1-203ENST00000547825 TRGV4A0A0C4DH28 118 aa4.11□□□□□ -1.75
LIMA1-203ENST00000547825 A0A0J9YY99 117 aa4.11□□□□□ -1.75
LIMA1-203ENST00000547825 BLCAPP62952 87 aa4.11□□□□□ -1.75
LIMA1-203ENST00000547825 CFAP126Q5VTH2 177 aa4.11□□□□□ -1.75
LIMA1-203ENST00000547825 MDFICQ9P1T7 246 aa4.11□□□□□ -1.75
LIMA1-203ENST00000547825 KAAG1Q9UBP8 84 aa4.11□□□□□ -1.75
LIMA1-203ENST00000547825 NF1P21359 2839 aa4.11□□□□□ -1.75
LIMA1-203ENST00000547825 A0A096LNT2 108 aa4.11□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 99.1 ms