RNA–Protein interactions for RNA: ENST00000543633.5

VPS33A-208, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS33A, Length 2,019 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-208ENST00000543633 IGHV4-59P01825 116 aa10.05□□□□□ -0.8
VPS33A-208ENST00000543633 SYNJ2BPP57105 145 aa10.05□□□□□ -0.8
VPS33A-208ENST00000543633 Q1RN00 199 aa10.05□□□□□ -0.8
VPS33A-208ENST00000543633 NRGNQ92686 78 aa10.05□□□□□ -0.8
VPS33A-208ENST00000543633 FAM104AQ969W3 186 aa10.05□□□□□ -0.8
VPS33A-208ENST00000543633 UBE2E2Q96LR5 201 aa10.05□□□□□ -0.8
VPS33A-208ENST00000543633 YAE1D1Q9NRH1 226 aa10.05□□□□□ -0.8
VPS33A-208ENST00000543633 TNFRSF18Q9Y5U5 241 aa10.05□□□□□ -0.8
VPS33A-208ENST00000543633 TRBV10-2A0A0K0K1G8 114 aa10.04□□□□□ -0.8
VPS33A-208ENST00000543633 ZNF415Q09FC8 603 aa10.04□□□□□ -0.8
VPS33A-208ENST00000543633 MIAQ16674 131 aa10.04□□□□□ -0.8
VPS33A-208ENST00000543633 DEFB112Q30KQ8 113 aa10.04□□□□□ -0.8
VPS33A-208ENST00000543633 DNAJC30Q96LL9 226 aa10.04□□□□□ -0.8
VPS33A-208ENST00000543633 CENPEQ02224 2701 aa10.04□□□□□ -0.8
VPS33A-208ENST00000543633 NDUFA12Q9UI09 145 aa10.04□□□□□ -0.8
VPS33A-208ENST00000543633 IGHV3-64A0A075B6Q5 118 aa10.03□□□□□ -0.8
VPS33A-208ENST00000543633 J3QKU1 62 aa10.03□□□□□ -0.8
VPS33A-208ENST00000543633 TGFAP01135 160 aa10.03□□□□□ -0.8
VPS33A-208ENST00000543633 IFITM1P13164 125 aa10.03□□□□□ -0.8
VPS33A-208ENST00000543633 HOXD3P31249 432 aaPredicted RBP10.03□□□□□ -0.8
VPS33A-208ENST00000543633 VSIG2Q96IQ7 327 aa10.03□□□□□ -0.8
VPS33A-208ENST00000543633 CITED1Q99966 193 aa10.03□□□□□ -0.8
VPS33A-208ENST00000543633 H3BT86 120 aa10.02□□□□□ -0.8
VPS33A-208ENST00000543633 RBMY1A1P0DJD3 496 aaKnown RBP10.02□□□□□ -0.8
VPS33A-208ENST00000543633 RBMY1CP0DJD4 496 aa10.02□□□□□ -0.8
VPS33A-208ENST00000543633 RBMY1FQ15415 496 aaKnown RBP10.02□□□□□ -0.8
VPS33A-208ENST00000543633 ZFAND6Q6FIF0 208 aa10.02□□□□□ -0.8
VPS33A-208ENST00000543633 LINC01356Q8N9X3 169 aa10.02□□□□□ -0.8
VPS33A-208ENST00000543633 SPXQ9BT56 116 aa10.02□□□□□ -0.8
VPS33A-208ENST00000543633 TRIAP1O43715 76 aa10.02□□□□□ -0.81
VPS33A-208ENST00000543633 COX6CP09669 75 aa10.02□□□□□ -0.81
VPS33A-208ENST00000543633 C10orf99Q6UWK7 81 aa10.02□□□□□ -0.81
VPS33A-208ENST00000543633 CHCHD7Q9BUK0 85 aa10.02□□□□□ -0.81
VPS33A-208ENST00000543633 VPREB3Q9UKI3 123 aa10.02□□□□□ -0.81
VPS33A-208ENST00000543633 UBE2D4Q9Y2X8 147 aa10.02□□□□□ -0.81
VPS33A-208ENST00000543633 ICOSQ9Y6W8 199 aa10.02□□□□□ -0.81
VPS33A-208ENST00000543633 HELZ2Q9BYK8 2649 aaKnown RBP10.01□□□□□ -0.81
VPS33A-208ENST00000543633 H3BMM0 161 aa10□□□□□ -0.81
VPS33A-208ENST00000543633 Q6Q795 121 aa10□□□□□ -0.81
VPS33A-208ENST00000543633 IGLV5-45A0A087WSX0 123 aa10□□□□□ -0.81
VPS33A-208ENST00000543633 H7C2G1 150 aa10□□□□□ -0.81
VPS33A-208ENST00000543633 TIRAPP58753 221 aa10□□□□□ -0.81
VPS33A-208ENST00000543633 KRTAP10-9P60411 292 aa10□□□□□ -0.81
VPS33A-208ENST00000543633 NTN5Q8WTR8 489 aaPredicted RBP10□□□□□ -0.81
VPS33A-208ENST00000543633 DUX5Q96PT3 197 aa10□□□□□ -0.81
VPS33A-208ENST00000543633 PTPN13Q12923 2485 aa10□□□□□ -0.81
VPS33A-208ENST00000543633 IGHV3-53P01767 116 aa9.99□□□□□ -0.81
VPS33A-208ENST00000543633 MRPL23Q16540 153 aaKnown RBP9.99□□□□□ -0.81
VPS33A-208ENST00000543633 TEX29Q8N6K0 151 aa9.99□□□□□ -0.81
VPS33A-208ENST00000543633 UBE2WQ96B02 151 aa9.99□□□□□ -0.81
VPS33A-208ENST00000543633 DUX3Q96PT4 197 aa9.99□□□□□ -0.81
VPS33A-208ENST00000543633 ZNF702PQ9H963 129 aa9.99□□□□□ -0.81
VPS33A-208ENST00000543633 MAP1AP78559 2803 aaPredicted RBP9.99□□□□□ -0.81
VPS33A-208ENST00000543633 TRAV8-3A0A0A6YYJ7 113 aa9.99□□□□□ -0.81
VPS33A-208ENST00000543633 BEAN1Q3B7T3 259 aa9.99□□□□□ -0.81
VPS33A-208ENST00000543633 TMEM61Q8N0U2 210 aa9.99□□□□□ -0.81
VPS33A-208ENST00000543633 TRAV26-1A0A087WT03 109 aa9.98□□□□□ -0.81
VPS33A-208ENST00000543633 KNCNA6PVL3 124 aa9.98□□□□□ -0.81
VPS33A-208ENST00000543633 NDUFA1O15239 70 aa9.98□□□□□ -0.81
VPS33A-208ENST00000543633 FSHBP01225 129 aa9.98□□□□□ -0.81
VPS33A-208ENST00000543633 DEFB131AP59861 70 aa9.98□□□□□ -0.81
VPS33A-208ENST00000543633 APCP25054 2843 aa9.98□□□□□ -0.81
VPS33A-208ENST00000543633 DOPEY2Q9Y3R5 2298 aa9.98□□□□□ -0.81
VPS33A-208ENST00000543633 SVEP1Q4LDE5 3571 aa9.97□□□□□ -0.81
VPS33A-208ENST00000543633 NACAE9PAV3 2078 aa9.97□□□□□ -0.81
VPS33A-208ENST00000543633 SNCGO76070 127 aa9.97□□□□□ -0.81
VPS33A-208ENST00000543633 CLUHP3Q96NS8 147 aa9.97□□□□□ -0.81
VPS33A-208ENST00000543633 PEMTQ9UBM1 199 aa9.97□□□□□ -0.81
VPS33A-208ENST00000543633 POLQO75417 2590 aa9.97□□□□□ -0.81
VPS33A-208ENST00000543633 A0A096LNT2 108 aa9.97□□□□□ -0.81
VPS33A-208ENST00000543633 TRAV8-4A0A0B4J246 113 aa9.97□□□□□ -0.81
VPS33A-208ENST00000543633 FAM240AA0A1B0GVK7 77 aa9.97□□□□□ -0.81
VPS33A-208ENST00000543633 RBMY1BA6NDE4 496 aaKnown RBP9.97□□□□□ -0.81
VPS33A-208ENST00000543633 RBMY1EA6NEQ0 496 aaKnown RBP9.97□□□□□ -0.81
VPS33A-208ENST00000543633 PRSS2P07478 247 aa9.97□□□□□ -0.81
VPS33A-208ENST00000543633 RBMY1DP0C7P1 496 aaKnown RBP9.97□□□□□ -0.81
VPS33A-208ENST00000543633 ADAMTSL4-AS1Q5T5F5 129 aa9.97□□□□□ -0.81
VPS33A-208ENST00000543633 PRRC2AP48634 2157 aaKnown RBP9.97□□□□□ -0.81
VPS33A-208ENST00000543633 CELSR1Q9NYQ6 3014 aa9.97□□□□□ -0.81
VPS33A-208ENST00000543633 LST1O00453 97 aa9.96□□□□□ -0.81
VPS33A-208ENST00000543633 RS1O15537 224 aa9.96□□□□□ -0.81
VPS33A-208ENST00000543633 PROK1P58294 105 aa9.96□□□□□ -0.81
VPS33A-208ENST00000543633 Q6YL49 198 aa9.96□□□□□ -0.81
VPS33A-208ENST00000543633 FAM19A3Q7Z5A8 133 aa9.96□□□□□ -0.81
VPS33A-208ENST00000543633 C11orf72Q8NBR9 251 aa9.96□□□□□ -0.81
VPS33A-208ENST00000543633 COPS9Q8WXC6 57 aa9.96□□□□□ -0.81
VPS33A-208ENST00000543633 ANAPC13Q9BS18 74 aa9.96□□□□□ -0.81
VPS33A-208ENST00000543633 ANKRD17O75179 2603 aaKnown RBP9.96□□□□□ -0.81
VPS33A-208ENST00000543633 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP9.96□□□□□ -0.824e-9■■■■■ 34.1
VPS33A-208ENST00000543633 IGHV3-73A0A0B4J1V6 119 aa9.95□□□□□ -0.82
VPS33A-208ENST00000543633 ADARB2-AS1A8MUL3 147 aa9.95□□□□□ -0.82
VPS33A-208ENST00000543633 DEFB121Q5J5C9 76 aa9.95□□□□□ -0.82
VPS33A-208ENST00000543633 CEMP1Q6PRD7 247 aaPredicted RBP9.95□□□□□ -0.82
VPS33A-208ENST00000543633 C2orf82Q6UX34 121 aa9.95□□□□□ -0.82
VPS33A-208ENST00000543633 ABCA12Q86UK0 2595 aa9.95□□□□□ -0.82
VPS33A-208ENST00000543633 PPDPFQ9H3Y8 114 aa9.95□□□□□ -0.82
VPS33A-208ENST00000543633 H7C423 109 aa9.94□□□□□ -0.82
VPS33A-208ENST00000543633 INSP01308 110 aa9.94□□□□□ -0.82
VPS33A-208ENST00000543633 GAGE2BQ13066 116 aa9.94□□□□□ -0.82
VPS33A-208ENST00000543633 CIRBPQ14011 172 aaKnown RBP9.94□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 65.7 ms