RNA–Protein interactions for RNA: ENST00000539950.1

VPS13A-213, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-213ENST00000539950 ANK2Q01484 3957 aa-0.09□□□□□ -2.42
VPS13A-213ENST00000539950 TRAV13-2A0A0B4J235 113 aa-0.09□□□□□ -2.42
VPS13A-213ENST00000539950 PIGBOS1A0A0B4J2F0 54 aa-0.09□□□□□ -2.42
VPS13A-213ENST00000539950 A0A0D9SFI3 127 aa-0.09□□□□□ -2.42
VPS13A-213ENST00000539950 ZNF815PA8K554 130 aa-0.09□□□□□ -2.42
VPS13A-213ENST00000539950 SNCGO76070 127 aa-0.09□□□□□ -2.42
VPS13A-213ENST00000539950 SPTSSBQ8NFR3 76 aa-0.09□□□□□ -2.42
VPS13A-213ENST00000539950 FAM213BQ8TBF2 198 aa-0.09□□□□□ -2.42
VPS13A-213ENST00000539950 PDCD10Q9BUL8 212 aa-0.09□□□□□ -2.42
VPS13A-213ENST00000539950 SEC11CQ9BY50 192 aa-0.09□□□□□ -2.42
VPS13A-213ENST00000539950 NAA60Q9H7X0 242 aa-0.09□□□□□ -2.42
VPS13A-213ENST00000539950 LINC00472Q9H8W2 130 aa-0.09□□□□□ -2.42
VPS13A-213ENST00000539950 ARFGEF1Q9Y6D6 1849 aa-0.09□□□□□ -2.42
VPS13A-213ENST00000539950 MYO7AQ13402 2215 aa-0.09□□□□□ -2.42
VPS13A-213ENST00000539950 ASXL3Q9C0F0 2248 aa-0.09□□□□□ -2.42
VPS13A-213ENST00000539950 NHSL1Q5SYE7 1610 aa-0.09□□□□□ -2.42
VPS13A-213ENST00000539950 FAM208BQ5VWN6 2430 aa-0.09□□□□□ -2.42
VPS13A-213ENST00000539950 CACNA1CQ13936 2221 aa-0.1□□□□□ -2.43
VPS13A-213ENST00000539950 FOCADQ5VW36 1801 aa-0.1□□□□□ -2.43
VPS13A-213ENST00000539950 NAIPQ13075 1403 aa-0.1□□□□□ -2.43
VPS13A-213ENST00000539950 RIMS1Q86UR5 1692 aaKnown RBP-0.1□□□□□ -2.43
VPS13A-213ENST00000539950 HIST1H1DP16402 221 aaKnown RBP-0.1□□□□□ -2.43
VPS13A-213ENST00000539950 CCDC58Q4VC31 144 aa-0.1□□□□□ -2.43
VPS13A-213ENST00000539950 Q5VSD8 79 aa-0.1□□□□□ -2.43
VPS13A-213ENST00000539950 CFAP126Q5VTH2 177 aa-0.1□□□□□ -2.43
VPS13A-213ENST00000539950 SPANXDQ9BXN6 97 aa-0.1□□□□□ -2.43
VPS13A-213ENST00000539950 R4GMQ9 66 aa-0.1□□□□□ -2.43
VPS13A-213ENST00000539950 KDM3BQ7LBC6 1761 aa-0.1□□□□□ -2.43
VPS13A-213ENST00000539950 LRP6O75581 1613 aa-0.1□□□□□ -2.43
VPS13A-213ENST00000539950 MYOM1P52179 1685 aa-0.11□□□□□ -2.43
VPS13A-213ENST00000539950 CPSF1Q10570 1443 aaKnown RBP-0.11□□□□□ -2.43
VPS13A-213ENST00000539950 SMG6Q86US8 1419 aaKnown RBP-0.11□□□□□ -2.43
VPS13A-213ENST00000539950 EFCAB10A6NFE3 127 aa-0.11□□□□□ -2.43
VPS13A-213ENST00000539950 I3L2K1 104 aa-0.11□□□□□ -2.43
VPS13A-213ENST00000539950 M0R135 149 aa-0.11□□□□□ -2.43
VPS13A-213ENST00000539950 GNG7O60262 68 aa-0.11□□□□□ -2.43
VPS13A-213ENST00000539950 PPP1R17O96001 155 aa-0.11□□□□□ -2.43
VPS13A-213ENST00000539950 TNFP01375 233 aa-0.11□□□□□ -2.43
VPS13A-213ENST00000539950 SMIM6P0DI80 62 aa-0.11□□□□□ -2.43
VPS13A-213ENST00000539950 WFDC2Q14508 124 aa-0.11□□□□□ -2.43
VPS13A-213ENST00000539950 Q56UQ5 140 aa-0.11□□□□□ -2.43
VPS13A-213ENST00000539950 MEIG1Q5JSS6 88 aa-0.11□□□□□ -2.43
VPS13A-213ENST00000539950 S100A7L2Q5SY68 101 aa-0.11□□□□□ -2.43
VPS13A-213ENST00000539950 ZNF436-AS1Q8NC38 126 aaPredicted RBP-0.11□□□□□ -2.43
VPS13A-213ENST00000539950 SMIM4Q8WVI0 70 aa-0.11□□□□□ -2.43
VPS13A-213ENST00000539950 PPP3R2Q96LZ3 170 aa-0.11□□□□□ -2.43
VPS13A-213ENST00000539950 AQP10Q96PS8 301 aa-0.11□□□□□ -2.43
VPS13A-213ENST00000539950 NDUFA4L2Q9NRX3 87 aa-0.11□□□□□ -2.43
VPS13A-213ENST00000539950 PATJQ8NI35 1801 aa-0.11□□□□□ -2.43
VPS13A-213ENST00000539950 F8P00451 2351 aa-0.11□□□□□ -2.43
VPS13A-213ENST00000539950 HMCN2Q8NDA2 5059 aa-0.11□□□□□ -2.43
VPS13A-213ENST00000539950 IGF2RP11717 2491 aa-0.11□□□□□ -2.43
VPS13A-213ENST00000539950 ARAP2Q8WZ64 1704 aa-0.12□□□□□ -2.43
VPS13A-213ENST00000539950 TRBV7-3A0A075B6L6 115 aa-0.12□□□□□ -2.43
VPS13A-213ENST00000539950 LOC100130705A0A1B0GUX0 176 aa-0.12□□□□□ -2.43
VPS13A-213ENST00000539950 C10orf142B7Z368 130 aa-0.12□□□□□ -2.43
VPS13A-213ENST00000539950 SSSCA1O60232 199 aa-0.12□□□□□ -2.43
VPS13A-213ENST00000539950 SPRR2DP22532 72 aa-0.12□□□□□ -2.43
VPS13A-213ENST00000539950 RBM3P98179 157 aaKnown RBP-0.12□□□□□ -2.43
VPS13A-213ENST00000539950 COX17Q14061 63 aa-0.12□□□□□ -2.43
VPS13A-213ENST00000539950 C10orf128Q5T292 105 aa-0.12□□□□□ -2.43
VPS13A-213ENST00000539950 COMMD6Q7Z4G1 85 aa-0.12□□□□□ -2.43
VPS13A-213ENST00000539950 C5orf38Q86SI9 138 aa-0.12□□□□□ -2.43
VPS13A-213ENST00000539950 C8orf59Q8N0T1 100 aaPredicted RBP-0.12□□□□□ -2.43
VPS13A-213ENST00000539950 MGST2Q99735 147 aa-0.12□□□□□ -2.43
VPS13A-213ENST00000539950 PRO0255Q9UI72 69 aa-0.12□□□□□ -2.43
VPS13A-213ENST00000539950 TENM4Q6N022 2769 aa-0.13□□□□□ -2.43
VPS13A-213ENST00000539950 DOCK11Q5JSL3 2073 aa-0.13□□□□□ -2.43
VPS13A-213ENST00000539950 DOCK1Q14185 1865 aa-0.13□□□□□ -2.43
VPS13A-213ENST00000539950 MRC2Q9UBG0 1479 aa-0.13□□□□□ -2.43
VPS13A-213ENST00000539950 UQCR11O14957 56 aa-0.13□□□□□ -2.43
VPS13A-213ENST00000539950 BCE1O60756 84 aa-0.13□□□□□ -2.43
VPS13A-213ENST00000539950 TPPP2P59282 170 aa-0.13□□□□□ -2.43
VPS13A-213ENST00000539950 SPAG11BQ08648 103 aa-0.13□□□□□ -2.43
VPS13A-213ENST00000539950 SPAG11AQ6PDA7 123 aa-0.13□□□□□ -2.43
VPS13A-213ENST00000539950 TTC9CQ8N5M4 171 aa-0.13□□□□□ -2.43
VPS13A-213ENST00000539950 PP6455Q8WZ26 134 aa-0.13□□□□□ -2.43
VPS13A-213ENST00000539950 SPRR4Q96PI1 79 aa-0.13□□□□□ -2.43
VPS13A-213ENST00000539950 TSC22D3Q99576 134 aa-0.13□□□□□ -2.43
VPS13A-213ENST00000539950 DYNLRB1Q9NP97 96 aa-0.13□□□□□ -2.43
VPS13A-213ENST00000539950 SCN3BQ9NY72 215 aa-0.13□□□□□ -2.43
VPS13A-213ENST00000539950 SPCS1Q9Y6A9 102 aa-0.13□□□□□ -2.43
VPS13A-213ENST00000539950 LINC01558Q9Y6Z2 57 aa-0.13□□□□□ -2.43
VPS13A-213ENST00000539950 V9GYH0 126 aa-0.13□□□□□ -2.43
VPS13A-213ENST00000539950 CSMD3Q7Z407 3707 aa-0.13□□□□□ -2.43
VPS13A-213ENST00000539950 SPEF2Q9C093 1822 aa-0.13□□□□□ -2.43
VPS13A-213ENST00000539950 NALCNQ8IZF0 1738 aa-0.13□□□□□ -2.43
VPS13A-213ENST00000539950 RAPGEF6Q8TEU7 1601 aa-0.13□□□□□ -2.43
VPS13A-213ENST00000539950 ABCA2Q9BZC7 2435 aa-0.14□□□□□ -2.43
VPS13A-213ENST00000539950 PPRC1Q5VV67 1664 aaKnown RBP-0.14□□□□□ -2.43
VPS13A-213ENST00000539950 KIF21AQ7Z4S6 1674 aa-0.14□□□□□ -2.43
VPS13A-213ENST00000539950 ARHGEF5Q12774 1597 aa-0.14□□□□□ -2.43
VPS13A-213ENST00000539950 DIP2CQ9Y2E4 1556 aa-0.14□□□□□ -2.43
VPS13A-213ENST00000539950 MYOM2P54296 1465 aa-0.14□□□□□ -2.43
VPS13A-213ENST00000539950 PLXNB2O15031 1838 aa-0.14□□□□□ -2.43
VPS13A-213ENST00000539950 WNK3Q9BYP7 1800 aa-0.14□□□□□ -2.43
VPS13A-213ENST00000539950 LOC285095A0A1B0GVY8 99 aa-0.14□□□□□ -2.43
VPS13A-213ENST00000539950 M0R3E3 92 aa-0.14□□□□□ -2.43
VPS13A-213ENST00000539950 APOC2P02655 101 aa-0.14□□□□□ -2.43
VPS13A-213ENST00000539950 Q8IZM0 81 aa-0.14□□□□□ -2.43
Retrieved 100 of 20,778 RNA–protein pairs in 85.8 ms