RNA–Protein interactions for RNA: ENST00000529637.5

USP48-213, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 3,228 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-213ENST00000529637 POM121L12Q8N7R1 296 aa10.52□□□□□ -0.73
USP48-213ENST00000529637 HTN1P15515 57 aa10.51□□□□□ -0.73
USP48-213ENST00000529637 NPC2P61916 151 aa10.51□□□□□ -0.73
USP48-213ENST00000529637 DEFB112Q30KQ8 113 aa10.51□□□□□ -0.73
USP48-213ENST00000529637 TRBV10-2A0A0K0K1G8 114 aa10.51□□□□□ -0.73
USP48-213ENST00000529637 H3BMM0 161 aa10.51□□□□□ -0.73
USP48-213ENST00000529637 LGALS9O00182 355 aa10.51□□□□□ -0.73
USP48-213ENST00000529637 BRI3O95415 125 aa10.51□□□□□ -0.73
USP48-213ENST00000529637 ZNF22P17026 224 aaPredicted RBP10.51□□□□□ -0.73
USP48-213ENST00000529637 MEIG1Q5JSS6 88 aa10.51□□□□□ -0.73
USP48-213ENST00000529637 UBE2WQ96B02 151 aa10.51□□□□□ -0.73
USP48-213ENST00000529637 PRRC2AP48634 2157 aaKnown RBP10.51□□□□□ -0.73
USP48-213ENST00000529637 H7C423 109 aa10.5□□□□□ -0.73
USP48-213ENST00000529637 LEPROTO15243 131 aa10.5□□□□□ -0.73
USP48-213ENST00000529637 PPP1R17O96001 155 aa10.5□□□□□ -0.73
USP48-213ENST00000529637 RPL13AP40429 203 aaKnown RBP10.5□□□□□ -0.73
USP48-213ENST00000529637 C2orf82Q6UX34 121 aa10.5□□□□□ -0.73
USP48-213ENST00000529637 CLEC2BQ92478 149 aa10.5□□□□□ -0.73
USP48-213ENST00000529637 PRSS2P07478 247 aa10.5□□□□□ -0.73
USP48-213ENST00000529637 ZNF56Q15929 161 aa10.5□□□□□ -0.73
USP48-213ENST00000529637 Q6Q795 121 aa10.5□□□□□ -0.73
USP48-213ENST00000529637 WNK1Q9H4A3 2382 aa10.5□□□□□ -0.73
USP48-213ENST00000529637 A0A0J9YXY3 114 aa10.49□□□□□ -0.73
USP48-213ENST00000529637 IGLV1-40P01703 118 aa10.49□□□□□ -0.73
USP48-213ENST00000529637 SYNJ2BPP57105 145 aa10.49□□□□□ -0.73
USP48-213ENST00000529637 ADAMTSL4-AS1Q5T5F5 129 aa10.49□□□□□ -0.73
USP48-213ENST00000529637 FAM19A4Q96LR4 140 aa10.49□□□□□ -0.73
USP48-213ENST00000529637 CSMD2Q7Z408 3487 aa10.49□□□□□ -0.73
USP48-213ENST00000529637 SPXQ9BT56 116 aa10.49□□□□□ -0.73
USP48-213ENST00000529637 CCDC168Q8NDH2 2452 aa10.49□□□□□ -0.73
USP48-213ENST00000529637 M0R2P5 195 aa10.48□□□□□ -0.73
USP48-213ENST00000529637 TRBV27A0A0K0K1C4 114 aa10.48□□□□□ -0.73
USP48-213ENST00000529637 A8MZ25 164 aa10.48□□□□□ -0.73
USP48-213ENST00000529637 TRAV8-3A0A0A6YYJ7 113 aa10.48□□□□□ -0.73
USP48-213ENST00000529637 NXPH4O95158 308 aa10.48□□□□□ -0.73
USP48-213ENST00000529637 SPINK13Q1W4C9 94 aa10.48□□□□□ -0.73
USP48-213ENST00000529637 LITAFQ99732 161 aa10.48□□□□□ -0.73
USP48-213ENST00000529637 CUBNO60494 3623 aa10.48□□□□□ -0.73
USP48-213ENST00000529637 TRBV30A0A0K0K1B3 111 aa10.47□□□□□ -0.73
USP48-213ENST00000529637 SNRPD3P62318 126 aaKnown RBP10.47□□□□□ -0.73
USP48-213ENST00000529637 MED14OSP0DP75 135 aa10.47□□□□□ -0.73
USP48-213ENST00000529637 TRAV16A0A0A6YYK6 109 aaPredicted RBP10.46□□□□□ -0.73
USP48-213ENST00000529637 RNASE13Q5GAN3 156 aaKnown RBP10.46□□□□□ -0.73
USP48-213ENST00000529637 DCANP1Q8TF63 244 aa10.46□□□□□ -0.73
USP48-213ENST00000529637 MDFICQ9P1T7 246 aa10.46□□□□□ -0.73
USP48-213ENST00000529637 ICOSQ9Y6W8 199 aa10.46□□□□□ -0.73
USP48-213ENST00000529637 IGHV3-30-3P0DP02 117 aa10.46□□□□□ -0.74
USP48-213ENST00000529637 CEMP1Q6PRD7 247 aaPredicted RBP10.45□□□□□ -0.74
USP48-213ENST00000529637 KLLNB2CW77 178 aa10.45□□□□□ -0.74
USP48-213ENST00000529637 KHDC1LQ5JSQ8 128 aa10.45□□□□□ -0.74
USP48-213ENST00000529637 APRG1Q8IVJ8 170 aa10.45□□□□□ -0.74
USP48-213ENST00000529637 M0QY20 66 aa10.44□□□□□ -0.74
USP48-213ENST00000529637 PSMB8P28062 276 aa10.44□□□□□ -0.74
USP48-213ENST00000529637 IGLV4-3A0A075B6K6 122 aa10.44□□□□□ -0.74
USP48-213ENST00000529637 K7EMT4 169 aa10.44□□□□□ -0.74
USP48-213ENST00000529637 LINC01600Q96MT4 127 aa10.44□□□□□ -0.74
USP48-213ENST00000529637 EPG5Q9HCE0 2579 aa10.43□□□□□ -0.74
USP48-213ENST00000529637 LINC01356Q8N9X3 169 aa10.43□□□□□ -0.74
USP48-213ENST00000529637 DAND5Q8N907 189 aa10.43□□□□□ -0.74
USP48-213ENST00000529637 MXRA5Q9NR99 2828 aa10.43□□□□□ -0.74
USP48-213ENST00000529637 C2CD3Q4AC94 2353 aa10.43□□□□□ -0.74
USP48-213ENST00000529637 CFHR3Q02985 330 aa10.43□□□□□ -0.74
USP48-213ENST00000529637 C20orf203Q8NBC4 194 aa10.43□□□□□ -0.74
USP48-213ENST00000529637 NACAE9PAV3 2078 aa10.42□□□□□ -0.74
USP48-213ENST00000529637 PRB1P04280 392 aa10.42□□□□□ -0.74
USP48-213ENST00000529637 FAM104AQ969W3 186 aa10.42□□□□□ -0.74
USP48-213ENST00000529637 PPDPFQ9H3Y8 114 aa10.42□□□□□ -0.74
USP48-213ENST00000529637 TEX15Q9BXT5 2789 aa10.42□□□□□ -0.74
USP48-213ENST00000529637 LINC01587Q99440 93 aa10.42□□□□□ -0.74
USP48-213ENST00000529637 IGHV3-73A0A0B4J1V6 119 aa10.41□□□□□ -0.74
USP48-213ENST00000529637 TRBV6-5A0A0K0K1A5 114 aa10.41□□□□□ -0.74
USP48-213ENST00000529637 I3L3M4 83 aa10.41□□□□□ -0.74
USP48-213ENST00000529637 DEFB136Q30KP8 78 aa10.41□□□□□ -0.74
USP48-213ENST00000529637 A0A0J9YX75 114 aa10.41□□□□□ -0.74
USP48-213ENST00000529637 TIMM21Q9BVV7 248 aa10.41□□□□□ -0.74
USP48-213ENST00000529637 TRGV11A0A075B6L2 103 aa10.41□□□□□ -0.74
USP48-213ENST00000529637 NSUN5P1Q3KNT7 163 aa10.41□□□□□ -0.74
USP48-213ENST00000529637 IGHV1OR15-1A0A075B7D0 117 aa10.4□□□□□ -0.74
USP48-213ENST00000529637 HOXD3P31249 432 aaPredicted RBP10.4□□□□□ -0.74
USP48-213ENST00000529637 IGHV3-16A0A0C4DH30 117 aa10.39□□□□□ -0.75
USP48-213ENST00000529637 TNFRSF18Q9Y5U5 241 aa10.39□□□□□ -0.75
USP48-213ENST00000529637 FAM236AA0A1B0GUQ0 79 aa10.39□□□□□ -0.75
USP48-213ENST00000529637 FAM236BA0A1B0GV22 79 aa10.39□□□□□ -0.75
USP48-213ENST00000529637 KNCNA6PVL3 124 aa10.39□□□□□ -0.75
USP48-213ENST00000529637 HIST2H2BDQ6DRA6 164 aa10.39□□□□□ -0.75
USP48-213ENST00000529637 NDUFA12Q9UI09 145 aa10.39□□□□□ -0.75
USP48-213ENST00000529637 H3BT86 120 aa10.39□□□□□ -0.75
USP48-213ENST00000529637 K7EQG2 157 aa10.39□□□□□ -0.75
USP48-213ENST00000529637 LST1O00453 97 aa10.39□□□□□ -0.75
USP48-213ENST00000529637 DSCR9P59020 149 aa10.39□□□□□ -0.75
USP48-213ENST00000529637 Q9UF83 564 aa10.39□□□□□ -0.75
USP48-213ENST00000529637 VPREB3Q9UKI3 123 aa10.38□□□□□ -0.75
USP48-213ENST00000529637 PROK1P58294 105 aa10.37□□□□□ -0.75
USP48-213ENST00000529637 SMCR5Q8TEV8 140 aa10.37□□□□□ -0.75
USP48-213ENST00000529637 COX6CP09669 75 aa10.37□□□□□ -0.75
USP48-213ENST00000529637 DEFB131AP59861 70 aa10.37□□□□□ -0.75
USP48-213ENST00000529637 RHOHQ15669 191 aa10.37□□□□□ -0.75
USP48-213ENST00000529637 PRM2P04554 102 aa10.37□□□□□ -0.75
USP48-213ENST00000529637 CD28P10747 220 aa10.37□□□□□ -0.75
USP48-213ENST00000529637 SLURP1P55000 103 aa10.37□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 92.3 ms