RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 TCTAP57738 103 aa14.76□□□□□ -0.05
VPS28-209ENST00000528142 TRGV2A0A075B6R0 118 aa14.75□□□□□ -0.05
VPS28-209ENST00000528142 SMIM9A6NGZ8 99 aa14.75□□□□□ -0.05
VPS28-209ENST00000528142 K7EQD1 137 aa14.75□□□□□ -0.05
VPS28-209ENST00000528142 CIDEAO60543 219 aa14.75□□□□□ -0.05
VPS28-209ENST00000528142 PMVKQ15126 192 aa14.75□□□□□ -0.05
VPS28-209ENST00000528142 BOD1L2Q8IYS8 172 aa14.75□□□□□ -0.05
VPS28-209ENST00000528142 CST9LQ9H4G1 147 aa14.75□□□□□ -0.05
VPS28-209ENST00000528142 IGKV2D-26A0A0A0MRZ7 120 aa14.74□□□□□ -0.05
VPS28-209ENST00000528142 SHISA2Q6UWI4 295 aa14.74□□□□□ -0.05
VPS28-209ENST00000528142 SLC25A29Q8N8R3 303 aa14.74□□□□□ -0.05
VPS28-209ENST00000528142 CHCHD7Q9BUK0 85 aa14.74□□□□□ -0.05
VPS28-209ENST00000528142 ZNRF2Q8NHG8 242 aa14.73□□□□□ -0.05
VPS28-209ENST00000528142 MDFIQ99750 246 aa14.73□□□□□ -0.05
VPS28-209ENST00000528142 TRBV7-3A0A075B6L6 115 aa14.73□□□□□ -0.05
VPS28-209ENST00000528142 DLEU1O43261 78 aa14.73□□□□□ -0.05
VPS28-209ENST00000528142 APOC4P55056 127 aa14.73□□□□□ -0.05
VPS28-209ENST00000528142 LINC00612Q8N6U2 182 aa14.73□□□□□ -0.05
VPS28-209ENST00000528142 PHLDA1Q8WV24 401 aaPredicted RBP14.73□□□□□ -0.05
VPS28-209ENST00000528142 OPRPNQ99935 248 aaPredicted RBP14.73□□□□□ -0.05
VPS28-209ENST00000528142 IGHV3-38A0A0C4DH36 116 aa14.72□□□□□ -0.05
VPS28-209ENST00000528142 NMUP48645 174 aa14.72□□□□□ -0.05
VPS28-209ENST00000528142 EMP1P54849 157 aa14.72□□□□□ -0.05
VPS28-209ENST00000528142 C2orf91Q6ZV80 131 aa14.72□□□□□ -0.05
VPS28-209ENST00000528142 PCP2Q8IVA1 136 aa14.72□□□□□ -0.05
VPS28-209ENST00000528142 PYGO1Q9Y3Y4 419 aa14.72□□□□□ -0.05
VPS28-209ENST00000528142 IGLV4-69A0A075B6H9 119 aa14.71□□□□□ -0.05
VPS28-209ENST00000528142 LURAP1LQ8IV03 231 aa14.71□□□□□ -0.05
VPS28-209ENST00000528142 PKD1L1Q8TDX9 2849 aa14.71□□□□□ -0.05
VPS28-209ENST00000528142 CMYA5Q8N3K9 4069 aa14.71□□□□□ -0.05
VPS28-209ENST00000528142 RPL36AP83881 106 aaKnown RBP14.71□□□□□ -0.06
VPS28-209ENST00000528142 COTL1Q14019 142 aa14.71□□□□□ -0.06
VPS28-209ENST00000528142 RPL36ALQ969Q0 106 aaKnown RBP14.71□□□□□ -0.06
VPS28-209ENST00000528142 FAM104AQ969W3 186 aa14.71□□□□□ -0.06
VPS28-209ENST00000528142 IGLV4-3A0A075B6K6 122 aa14.7□□□□□ -0.06
VPS28-209ENST00000528142 TRBV6-4A0A1B0GX49 114 aa14.69□□□□□ -0.06
VPS28-209ENST00000528142 UBE2D3P61077 147 aa14.69□□□□□ -0.06
VPS28-209ENST00000528142 UBE2D2P62837 147 aa14.69□□□□□ -0.06
VPS28-209ENST00000528142 FHL2Q14192 279 aa14.69□□□□□ -0.06
VPS28-209ENST00000528142 BATFQ16520 125 aa14.69□□□□□ -0.06
VPS28-209ENST00000528142 DEFB135Q30KP9 77 aa14.69□□□□□ -0.06
VPS28-209ENST00000528142 OXLD1Q5BKU9 147 aa14.69□□□□□ -0.06
VPS28-209ENST00000528142 IGHV4-30-4P0DP06 118 aa14.68□□□□□ -0.06
VPS28-209ENST00000528142 C11orf86A6NJI1 115 aa14.67□□□□□ -0.06
VPS28-209ENST00000528142 NPSP0C0P6 89 aa14.67□□□□□ -0.06
VPS28-209ENST00000528142 HINT1P49773 126 aaPredicted RBP14.67□□□□□ -0.06
VPS28-209ENST00000528142 PAPPA-AS1Q5QFB9 102 aa14.67□□□□□ -0.06
VPS28-209ENST00000528142 DAZ4Q86SG3 579 aaKnown RBP14.67□□□□□ -0.06
VPS28-209ENST00000528142 DAZ3Q9NR90 486 aaKnown RBP14.67□□□□□ -0.06
VPS28-209ENST00000528142 ANK2Q01484 3957 aa14.67□□□□□ -0.06
VPS28-209ENST00000528142 GAGE12JA6NER3 117 aa14.66□□□□□ -0.06
VPS28-209ENST00000528142 SIVA1O15304 175 aa14.66□□□□□ -0.06
VPS28-209ENST00000528142 GAGE1Q13065 139 aa14.66□□□□□ -0.06
VPS28-209ENST00000528142 GAGE4Q13068 117 aa14.66□□□□□ -0.06
VPS28-209ENST00000528142 GAGE5Q13069 117 aa14.66□□□□□ -0.06
VPS28-209ENST00000528142 GAGE13Q4V321 117 aa14.66□□□□□ -0.06
VPS28-209ENST00000528142 ZMAT5Q9UDW3 170 aaKnown RBP14.66□□□□□ -0.06
VPS28-209ENST00000528142 UBE2D4Q9Y2X8 147 aa14.66□□□□□ -0.06
VPS28-209ENST00000528142 TRGV4A0A0C4DH28 118 aa14.66□□□□□ -0.06
VPS28-209ENST00000528142 TTTY13Q9BZ97 58 aa14.66□□□□□ -0.06
VPS28-209ENST00000528142 SPANXA1Q9NS26 97 aa14.66□□□□□ -0.06
VPS28-209ENST00000528142 IGKV2D-29A0A075B6S2 120 aaPredicted RBP14.65□□□□□ -0.06
VPS28-209ENST00000528142 IGKV2-29A2NJV5 120 aaPredicted RBP14.65□□□□□ -0.06
VPS28-209ENST00000528142 DEFB130BP0DP73 79 aa14.65□□□□□ -0.06
VPS28-209ENST00000528142 DEFB130AP0DP74 79 aa14.65□□□□□ -0.06
VPS28-209ENST00000528142 CRYBA4P53673 196 aa14.65□□□□□ -0.06
VPS28-209ENST00000528142 KRTAP10-11P60412 298 aa14.65□□□□□ -0.06
VPS28-209ENST00000528142 MPV17L2Q567V2 206 aa14.65□□□□□ -0.06
VPS28-209ENST00000528142 CEMP1Q6PRD7 247 aaPredicted RBP14.65□□□□□ -0.06
VPS28-209ENST00000528142 AMELXQ99217 191 aa14.65□□□□□ -0.06
VPS28-209ENST00000528142 VCX2Q9H322 139 aa14.65□□□□□ -0.06
VPS28-209ENST00000528142 A0A1B0GV90 55 aa14.64□□□□□ -0.07
VPS28-209ENST00000528142 OR11H2Q8NH07 326 aa14.64□□□□□ -0.07
VPS28-209ENST00000528142 EGFEM1PQ0D2K5 195 aa14.64□□□□□ -0.07
VPS28-209ENST00000528142 NTM-AS1Q6ZSK4 140 aa14.64□□□□□ -0.07
VPS28-209ENST00000528142 NFE4Q86UQ8 179 aa14.64□□□□□ -0.07
VPS28-209ENST00000528142 LOC100131303A0A0U1RQF7 123 aa14.63□□□□□ -0.07
VPS28-209ENST00000528142 E9PLD3 99 aa14.62□□□□□ -0.07
VPS28-209ENST00000528142 MAPKAPK5-AS1Q8N8E1 139 aa14.62□□□□□ -0.07
VPS28-209ENST00000528142 LYRM9A8MSI8 78 aa14.62□□□□□ -0.07
VPS28-209ENST00000528142 COL5A1-AS1Q5SY13 56 aa14.62□□□□□ -0.07
VPS28-209ENST00000528142 BVES-AS1Q5T3Y7 98 aa14.62□□□□□ -0.07
VPS28-209ENST00000528142 FAM222AQ5U5X8 452 aa14.62□□□□□ -0.07
VPS28-209ENST00000528142 IGHV4-28A0A0C4DH34 117 aa14.61□□□□□ -0.07
VPS28-209ENST00000528142 RNF183Q96D59 192 aa14.61□□□□□ -0.07
VPS28-209ENST00000528142 TIMM21Q9BVV7 248 aa14.61□□□□□ -0.07
VPS28-209ENST00000528142 TRAV8-6A0A0B4J262 113 aa14.6□□□□□ -0.07
VPS28-209ENST00000528142 LINC00694P0DN24 101 aa14.6□□□□□ -0.07
VPS28-209ENST00000528142 TMEM97Q5BJF2 176 aa14.6□□□□□ -0.07
VPS28-209ENST00000528142 PRADC1Q9BSG0 188 aa14.6□□□□□ -0.07
VPS28-209ENST00000528142 GTSF1LQ9H1H1 148 aa14.6□□□□□ -0.07
VPS28-209ENST00000528142 SBSPONQ8IVN8 264 aa14.59□□□□□ -0.07
VPS28-209ENST00000528142 Q8NAQ8 132 aa14.59□□□□□ -0.07
VPS28-209ENST00000528142 MIFP14174 115 aa14.59□□□□□ -0.07
VPS28-209ENST00000528142 CHAC1Q9BUX1 264 aa14.59□□□□□ -0.07
VPS28-209ENST00000528142 HIGD1BQ9P298 99 aa14.59□□□□□ -0.07
VPS28-209ENST00000528142 TRBV25-1A0A075B6N4 114 aa14.58□□□□□ -0.08
VPS28-209ENST00000528142 A0A0J9YXV3 536 aa14.58□□□□□ -0.08
VPS28-209ENST00000528142 DEFB4AO15263 64 aa14.58□□□□□ -0.08
VPS28-209ENST00000528142 MRPS36P82909 103 aaKnown RBP14.58□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 73.2 ms